Rmu_sc0008163.1_g000011

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008163.1
OG0000169
Physical Location & Seq
Forward (+)
49574 .. 50668
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008163.1_g000011.1.cds

Sequence Viewer

Length: 939 bp
atggtggataaggaattcaaaatccaagagagggctgaggatatgttcctattctcttttgaatctattcgagatcgtaataaagtactactgggaggcgtctggtgctatgatcgagcccctttgtgttttgcagagtatgatggagtcaaaccattgcatgaagttcagttcaagcacctcagagtttgggttagggtttctggaatcccacccctttatgaagagcctgagaatctcacactgatcgggaatctcctagggggtttcttagactatgataagaaggagttcaagaaaggctcgattagggttttattcactcatgatatttccaagctgatcttgcttgaatggagagtttatctagttgttgatgttgaacctattctgcagtttcagtttgaacatctgaaagggagatgttcccagtgtggacttgtcactcatgctggaattgcctgtgcaaaaccgagtatggcaaaccctactcctaaggttttgcattttcctagaccatcgacttctgggggttctttctccttctcggcaaaggacaagaatgatctcttcactacctcttcttccatccctttgaagaggaaaccagtcattttccttgcaacagactttgttgtggctgatgctcctttagagaaaaaattggaggaagatcagggtccagcgctagaacttcccagtgagacatgtgttttggacgattctgcaagtatgcaggctgatgcattgggattgattgaagatgacagtgatgttgctttggtaacccttaagaagaagaccggcaggcctcttggcaacaagaataagaatcaacgctctagtaagaagaataatggtggccttctgaagctcacctatcctacaaccactagttctgcttttagccctagagacaagggcaaaggaaaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

312

Amino Acids

34.84

Weight (kDa)

8.59

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 890
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 87
AfeI AGCGCT 1 cut(s) 687
AfiI CCNNNNNNNGG 1 cut(s) 31
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 707
AgsI TTSAA 9 cut(s) 19, 62, 175, 295, 353, 383, 407, 598, 761
AhlI ACTAGT 1 cut(s) 893
AluBI AGCT 2 cut(s) 340, 874
AluI AGCT 2 cut(s) 340, 874
Alw26I GTCTC 2 cut(s) 698, 909
Aor51HI AGCGCT 1 cut(s) 687
AoxI GGCC 2 cut(s) 809, 862
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 697, 729
Asp700I GAANNNNTTC 3 cut(s) 66, 290, 387
AspA2I CCTAGG 1 cut(s) 259
AspLEI GCGC 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 868
AvaII GGWCC 1 cut(s) 680
AvrII CCTAGG 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 495
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 806
BbvCI CCTCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 137, 526, 596
BcoDI GTCTC 2 cut(s) 698, 909
BcuI ACTAGT 1 cut(s) 893
BfaI CTAG 7 cut(s) 260, 368, 513, 689, 843, 894, 912
BfmI CTRYAG 1 cut(s) 392
BfoI RGCGCY 1 cut(s) 689
BfrI CTTAAG 1 cut(s) 791
BlnI CCTAGG 1 cut(s) 259
BmcAI AGTACT 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 1 cut(s) 681
BmrI ACTGGG 3 cut(s) 101, 424, 693
BmsI GCATC 2 cut(s) 634, 733
BmuI ACTGGG 3 cut(s) 101, 424, 693
BpiI GAAGAC 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 803
Bse1I ACTGG 4 cut(s) 96, 430, 608, 699
Bse21I CCTNAGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 3 cut(s) 27, 196, 222
BseNI ACTGG 4 cut(s) 96, 430, 608, 699
BshFI GGCC 2 cut(s) 811, 864
BsiSI CCGG 1 cut(s) 804
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 698, 909
BsnI GGCC 2 cut(s) 811, 864
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 6 cut(s) 73, 112, 246, 342, 565, 673
BspANI GGCC 2 cut(s) 811, 864
BspCNI CTCAG 3 cut(s) 28, 195, 223
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 396
BspQI GCTCTTC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 803
BsrI ACTGG 4 cut(s) 96, 430, 608, 699
BssAI RCCGGY 1 cut(s) 803
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 6 cut(s) 73, 112, 246, 342, 565, 673
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 770
Bst6I CTCTTC 4 cut(s) 219, 575, 586, 593
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 791
BstC8I GCNNGC 2 cut(s) 738, 809
BstDEI CTNAG 5 cut(s) 36, 182, 231, 271, 495
BstEII GGTNACC 1 cut(s) 784
BstF5I GGATG 1 cut(s) 588
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 1 cut(s) 688
BstKTI GATC 6 cut(s) 76, 115, 249, 345, 568, 676
BstMAI GTCTC 2 cut(s) 698, 909
BstMBI GATC 6 cut(s) 73, 112, 246, 342, 565, 673
BstMWI GCNNNNNNNGC 3 cut(s) 105, 346, 458
BstNSI RCATGY 1 cut(s) 711
BstPI GGTNACC 1 cut(s) 784
BstSFI CTRYAG 1 cut(s) 392
BstV2I GAAGAC 1 cut(s) 806
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 2 cut(s) 811, 864
BtsCI GGATG 1 cut(s) 588
BtsIMutI CAGTG 4 cut(s) 242, 437, 706, 775
Cac8I GCNNGC 2 cut(s) 738, 809
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 688
Cfr10I RCCGGY 1 cut(s) 803
Cfr13I GGNCC 1 cut(s) 680
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 86
CviAII CATG 4 cut(s) 161, 326, 449, 708
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 5 cut(s) 36, 182, 231, 271, 495
DpnI GATC 6 cut(s) 75, 114, 248, 344, 567, 675
DpnII GATC 6 cut(s) 73, 112, 246, 342, 565, 673
Eam1104I CTCTTC 4 cut(s) 219, 575, 586, 593
EarI CTCTTC 4 cut(s) 219, 575, 586, 593
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 811
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 680
Eco47III AGCGCT 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 890
Eco81I CCTNAGG 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 784
EcoO65I GGTNACC 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 164, 329, 452, 711
FalI AAGNNNNNCTT 3 cut(s) 329, 361, 918
FatI CATG 4 cut(s) 160, 325, 448, 707
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 121
FspBI CTAG 7 cut(s) 260, 368, 513, 689, 843, 894, 912
GlaI GCGC 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 2 cut(s) 811, 864
HapII CCGG 1 cut(s) 804
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 688
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 4 cut(s) 164, 329, 452, 711
Hin6I GCGC 1 cut(s) 686
HinP1I GCGC 1 cut(s) 686
HinfI GANTC 7 cut(s) 62, 147, 207, 235, 253, 722, 832
HpaII CCGG 1 cut(s) 804
HphI GGTGA 1 cut(s) 868
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 185, 414, 870
Hpy188III TCNNGA 5 cut(s) 71, 204, 250, 295, 326
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 280, 553, 875
HpyCH4III ACNGT 1 cut(s) 770
HpyCH4V TGCA 9 cut(s) 134, 160, 394, 467, 505, 623, 728, 736, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 346, 458
HpyF3I CTNAG 5 cut(s) 36, 182, 231, 271, 495
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 4 cut(s) 164, 329, 452, 711
HspAI GCGC 1 cut(s) 686
Kzo9I GATC 6 cut(s) 73, 112, 246, 342, 565, 673
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 652
LweI GCATC 2 cut(s) 634, 733
MaeI CTAG 7 cut(s) 260, 368, 513, 689, 843, 894, 912
MaeIII GTNAC 2 cut(s) 442, 784
MalI GATC 6 cut(s) 75, 114, 248, 344, 567, 675
MboI GATC 6 cut(s) 73, 112, 246, 342, 565, 673
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 14, 456, 662
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 8 cut(s) 24, 31, 89, 191, 589, 594, 661, 822
Mph1103I ATGCAT 1 cut(s) 748
MroXI GAANNNNTTC 3 cut(s) 66, 290, 387
MseI TTAA 1 cut(s) 792
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 1 cut(s) 804
MwoI GCNNNNNNNGC 3 cut(s) 105, 346, 458
NdeII GATC 6 cut(s) 73, 112, 246, 342, 565, 673
NlaIII CATG 4 cut(s) 164, 329, 452, 711
NlaIV GGNNCC 1 cut(s) 681
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 711
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 811
PciI ACATGT 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 219
PdmI GAANNNNTTC 3 cut(s) 66, 290, 387
PfeI GAWTC 6 cut(s) 62, 207, 235, 253, 722, 832
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PscI ACATGT 1 cut(s) 707
PspEI GGTNACC 1 cut(s) 784
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 680
PstI CTGCAG 1 cut(s) 396
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 1 cut(s) 792
Sau3AI GATC 6 cut(s) 73, 112, 246, 342, 565, 673
Sau96I GGNCC 1 cut(s) 680
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 1 cut(s) 156
SduI GDGCHC 1 cut(s) 121
SetI ASST 7 cut(s) 183, 342, 388, 501, 581, 876, 881
SfaNI GCATC 2 cut(s) 634, 733
SfcI CTRYAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
SpeI ACTAGT 1 cut(s) 893
Sse9I AATT 3 cut(s) 14, 456, 662
SseBI AGGCCT 1 cut(s) 811
SspMI CTAG 7 cut(s) 260, 368, 513, 689, 843, 894, 912
StuI AGGCCT 1 cut(s) 811
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 770
TaqI TCGA 4 cut(s) 70, 115, 305, 521
TasI AATT 3 cut(s) 14, 456, 662
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 6 cut(s) 62, 207, 235, 253, 722, 832
Tru1I TTAA 1 cut(s) 792
Tru9I TTAA 1 cut(s) 792
TscAI CASTG 4 cut(s) 249, 437, 706, 775
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 177, 237
TspRI CASTG 4 cut(s) 249, 437, 706, 775
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 711
XmaJI CCTAGG 1 cut(s) 259
XmnI GAANNNNTTC 3 cut(s) 66, 290, 387
XspI CTAG 7 cut(s) 260, 368, 513, 689, 843, 894, 912
ZrmI AGTACT 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.