Rmu_sc0008835.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008835.1
OG0000169
Physical Location & Seq
Reverse (-)
44149 .. 44943
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008835.1_g000009.1.cds

Sequence Viewer

Length: 735 bp
atgctcatcttcttcatgcatgacatctccaaacctatcctctttgagcgtaagatcttcttggatacagggattgaaccaatcttgaagtttcagtttgagcatctcaaaggtaggtgttctcaatgcagcctgcttacacattcgggggttaaatgtatagcacccaacccagccatctccacccctagggttataccttttggtggtcctccaattgcaggtggaactttctctttttcagcccaggccagccgagaactccaacaaccctcctcagccttgctcaagaagaaaaagcctgtaatccgaaagctagacagatcattatcagaagttgatccatctgggagtcccgtgcccaatatggctgctgaggaaactgatgaacctgtaggagcacagcagatagagcaggttgggaccgatgcttctggttcggccttcagggttaggagttccgagactggaggttgccctccctccccaaagaaactcaagacaatcatgggtggtaagatccccatactgcaagcagatgccctagggttgattgaagctgctaatgagagtgaacaaggaattctgaagaagaaggttggaagacctctaggaagcaagaacaaacatcctcgtccacagaagaagatgagtgggactttgcgtttgacttactcttcggttgatgctgctcatgagattagccctaagaataagggcaaagaaaagccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

244

Amino Acids

26.29

Weight (kDa)

9.7

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 2 cut(s) 212, 406
AclWI GGATC 2 cut(s) 335, 514
AcsI RAATTY 1 cut(s) 582
AcuI CTGAAG 2 cut(s) 430, 608
AfiI CCNNNNNNNGG 3 cut(s) 189, 206, 221
AgsI TTSAA 3 cut(s) 77, 88, 557
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 2 cut(s) 316, 560
AluI AGCT 2 cut(s) 316, 560
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 335, 514
AoxI GGCC 2 cut(s) 249, 441
ApeKI GCWGC 4 cut(s) 129, 371, 560, 689
ApoI RAATTY 1 cut(s) 582
ArsI GACNNNNNNTTYG 4 cut(s) 649, 661, 681, 693
AspA2I CCTAGG 2 cut(s) 188, 544
AspS9I GGNCC 2 cut(s) 209, 423
AvaII GGWCC 2 cut(s) 209, 423
AvrII CCTAGG 2 cut(s) 188, 544
BaeGI GKGCMC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 610
Bbv12I GWGCWC 1 cut(s) 403
BbvCI CCTCAGC 2 cut(s) 277, 375
BbvI GCAGC 4 cut(s) 141, 358, 547, 676
BccI CCATC 2 cut(s) 185, 352
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 4 cut(s) 189, 317, 545, 611
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 2 cut(s) 212, 406
BfuI GTATCC 1 cut(s) 58
BglII AGATCT 1 cut(s) 54
BisI GCNGC 4 cut(s) 130, 372, 561, 690
BlnI CCTAGG 2 cut(s) 188, 544
BlsI GCNGC 4 cut(s) 131, 373, 562, 691
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 2 cut(s) 209, 423
BmgT120I GGNCC 2 cut(s) 209, 423
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 4 cut(s) 112, 418, 529, 676
BpiI GAAGAC 1 cut(s) 610
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 2 cut(s) 277, 375
BpuEI CTTGAG 2 cut(s) 272, 482
BsaBI GATNNNNATC 1 cut(s) 328
BsaJI CCNNGG 3 cut(s) 188, 246, 544
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 206, 221
Bse1I ACTGG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 328
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 3 cut(s) 188, 246, 544
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 328
BseLI CCNNNNNNNGG 3 cut(s) 189, 206, 221
BseMII CTCAG 2 cut(s) 291, 366
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 4 cut(s) 141, 358, 547, 676
BseYI CCCAGC 1 cut(s) 172
BshFI GGCC 2 cut(s) 251, 443
BsiHKAI GWGCWC 1 cut(s) 403
BslFI GGGAC 3 cut(s) 339, 436, 670
BslI CCNNNNNNNGG 3 cut(s) 189, 206, 221
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 3 cut(s) 339, 436, 670
BsnI GGCC 2 cut(s) 251, 443
Bsp1286I GDGCHC 2 cut(s) 363, 403
Bsp143I GATC 4 cut(s) 54, 323, 340, 519
BspANI GGCC 2 cut(s) 251, 443
BspCNI CTCAG 2 cut(s) 290, 367
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 424
BspMI ACCTGC 2 cut(s) 212, 406
BspPI GGATC 2 cut(s) 335, 514
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 3 cut(s) 188, 246, 544
BssMI GATC 4 cut(s) 54, 323, 340, 519
BssT1I CCWWGG 2 cut(s) 188, 544
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 134, 253, 534
BstDEI CTNAG 3 cut(s) 277, 375, 708
BstF5I GGATG 1 cut(s) 628
BstKTI GATC 4 cut(s) 57, 326, 343, 522
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 4 cut(s) 54, 323, 340, 519
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 141, 358, 547, 676
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 2 cut(s) 54, 519
BstYI RGATCY 2 cut(s) 54, 519
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 251, 443
BtsCI GGATG 1 cut(s) 628
BveI ACCTGC 2 cut(s) 212, 406
Cac8I GCNNGC 3 cut(s) 134, 253, 534
CciI TCATGA 1 cut(s) 694
Cfr13I GGNCC 2 cut(s) 209, 423
CviAII CATG 4 cut(s) 16, 20, 508, 695
DdeI CTNAG 3 cut(s) 277, 375, 708
DpnI GATC 4 cut(s) 56, 325, 342, 521
DpnII GATC 4 cut(s) 54, 323, 340, 519
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
Eco130I CCWWGG 2 cut(s) 188, 544
Eco47I GGWCC 2 cut(s) 209, 423
Eco57I CTGAAG 2 cut(s) 430, 608
EcoRI GAATTC 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 188, 544
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 188, 544
FaeI CATG 4 cut(s) 19, 23, 511, 698
FaiI YATR 8 cut(s) 17, 21, 161, 197, 368, 509, 527, 696
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 3 cut(s) 339, 436, 670
FatI CATG 4 cut(s) 15, 19, 507, 694
Fnu4HI GCNGC 4 cut(s) 130, 372, 561, 690
FokI GGATG 1 cut(s) 615
Fsp4HI GCNGC 4 cut(s) 130, 372, 561, 690
FspBI CTAG 4 cut(s) 189, 317, 545, 611
GluI GCNGC 4 cut(s) 130, 372, 561, 690
GsaI CCCAGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 251, 443
Hin1II CATG 4 cut(s) 19, 23, 511, 698
HinfI GANTC 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 575, 638
Hpy188I TCNGA 4 cut(s) 311, 334, 463, 588
Hpy188III TCNNGA 4 cut(s) 85, 289, 499, 695
Hpy8I GTNNAC 2 cut(s) 575, 638
HpyAV CCTTC 2 cut(s) 454, 589
HpyCH4V TGCA 4 cut(s) 19, 129, 221, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 3 cut(s) 277, 375, 708
Hsp92II CATG 4 cut(s) 19, 23, 511, 698
Kzo9I GATC 4 cut(s) 54, 323, 340, 519
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 4 cut(s) 141, 358, 547, 676
LweI GCATC 4 cut(s) 112, 418, 529, 676
MaeI CTAG 4 cut(s) 189, 317, 545, 611
MalI GATC 4 cut(s) 56, 325, 342, 521
MboI GATC 4 cut(s) 54, 323, 340, 519
MboII GAAGA 9 cut(s) 4, 49, 304, 601, 604, 615, 655, 658, 669
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 2 cut(s) 54, 519
MhlI GDGCHC 2 cut(s) 363, 403
MluCI AATT 2 cut(s) 216, 582
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 2 cut(s) 289, 580
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 412
NdeII GATC 4 cut(s) 54, 323, 340, 519
NlaIII CATG 4 cut(s) 19, 23, 511, 698
NlaIV GGNNCC 1 cut(s) 424
NmeAIII GCCGAG 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 21
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 131, 373, 562, 691
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 2 cut(s) 209, 423
PsuI RGATCY 2 cut(s) 54, 519
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 4 cut(s) 130, 372, 561, 690
Sau3AI GATC 4 cut(s) 54, 323, 340, 519
Sau96I GGNCC 2 cut(s) 209, 423
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 2 cut(s) 363, 403
SfaNI GCATC 4 cut(s) 112, 418, 529, 676
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 2 cut(s) 209, 423
SmlI CTYRAG 2 cut(s) 287, 497
SmoI CTYRAG 2 cut(s) 287, 497
Sse9I AATT 2 cut(s) 216, 582
SspMI CTAG 4 cut(s) 189, 317, 545, 611
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 188, 544
TaqII GACCGA 1 cut(s) 440
TasI AATT 2 cut(s) 216, 582
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 4 cut(s) 129, 371, 560, 689
TspDTI ATGAA 2 cut(s) 4, 402
VpaK11BI GGWCC 2 cut(s) 209, 423
XapI RAATTY 1 cut(s) 582
XmaJI CCTAGG 2 cut(s) 188, 544
XspI CTAG 4 cut(s) 189, 317, 545, 611
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.