Rmu_sc0003872.1_g000005

Ribosomal protein L14p/L23e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003872.1
OG0000169
Physical Location & Seq
Reverse (-)
11692 .. 12690
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003872.1_g000005.1.cds

Sequence Viewer

Length: 786 bp
atggtggacaaggatttcaagatccaagagagggcgggggatctgttcttattctccttcgaatctgttcaagatcgtaacaaagtactctggagaggggtctggtgctttgatagagcccccatgtgttttgtaaagtatgatggagtcaaacctttgcacgaaatccaattcaagtatcttcgaatatggttcgaacatctgaaagggagatgttctcagtgtcgactcgtcacccatgccagaatttcttatgtggagccaaatctggcaaaccttacacctaggattttgcattttcctggaccattgacttctgagggttctttctccttctcggctaaggataagaatgatattttcactgcctcctcttccatcgctttgaagacgaaaccagtcatacatcgaacggagaagccaaatcctcctcctgcttctcctatgggttctgtacctgcagtggatattgctgtggctgatgctcctttggagcatgaattggagaatgatcggatctcagtcctggagtctaccattgagccttgtgaattggatggctctacaggtatgcgagtgcagcaagaagcgggcctgttttctaagaagccgaaccaaactggtgtttgtaactcttcccctaagaaatttaaaaccatcttgggtggtaagattcctaccctgcaggctaatgcattgggattgatcgaagatgataatgatgttgctttggtcacgctaaagaagaagactggcaggcctcttggcactaagaataagaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

261

Amino Acids

29.08

Weight (kDa)

8.96

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccI GTMKAC 2 cut(s) 226, 533
AciI CCGC 2 cut(s) 35, 590
AclWI GGATC 3 cut(s) 16, 48, 524
AcsI RAATTY 2 cut(s) 246, 647
AfaI GTAC 2 cut(s) 87, 456
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 4 cut(s) 19, 71, 175, 388
AjnI CCWGG 2 cut(s) 301, 525
AlwI GGATC 3 cut(s) 16, 48, 524
AoxI GGCC 2 cut(s) 592, 758
ApeKI GCWGC 1 cut(s) 580
ApoI RAATTY 2 cut(s) 246, 647
Asp700I GAANNNNTTC 1 cut(s) 66
AspA2I CCTAGG 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 305, 592
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 3 cut(s) 60, 184, 195
AvaII GGWCC 1 cut(s) 305
AvrII CCTAGG 1 cut(s) 284
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 395, 755
BbvI GCAGC 1 cut(s) 592
BccI CCATC 4 cut(s) 137, 386, 551, 665
BciT130I CCWGG 2 cut(s) 303, 527
BfaI CTAG 2 cut(s) 285, 784
BfmI CTRYAG 3 cut(s) 459, 564, 683
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 1 cut(s) 581
BlnI CCTAGG 1 cut(s) 284
BlsI GCNGC 1 cut(s) 582
BmcAI AGTACT 1 cut(s) 87
Bme1390I CCNGG 2 cut(s) 303, 527
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 305, 592
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 303, 527
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 2 cut(s) 395, 755
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpmI CTGGAG 2 cut(s) 112, 548
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 3 cut(s) 60, 184, 195
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 3 cut(s) 398, 625, 757
BseBI CCWGG 2 cut(s) 303, 527
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 562
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 3 cut(s) 233, 309, 534
BseNI ACTGG 3 cut(s) 398, 625, 757
BseRI GAGGAG 2 cut(s) 361, 420
BseXI GCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 599
BshFI GGCC 2 cut(s) 594, 760
BslI CCNNNNNNNGG 1 cut(s) 31
BsnI GGCC 2 cut(s) 594, 760
Bsp119I TTCGAA 3 cut(s) 60, 184, 195
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 6 cut(s) 21, 40, 73, 511, 516, 705
BspACI CCGC 2 cut(s) 35, 590
BspANI GGCC 2 cut(s) 594, 760
BspCNI CTCAG 3 cut(s) 232, 310, 533
BspLI GGNNCC 1 cut(s) 261
BspMAI CTGCAG 2 cut(s) 463, 687
BspMI ACCTGC 1 cut(s) 466
BspPI GGATC 3 cut(s) 16, 48, 524
BspT104I TTCGAA 3 cut(s) 60, 184, 195
BsrI ACTGG 3 cut(s) 398, 625, 757
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 6 cut(s) 21, 40, 73, 511, 516, 705
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 2 cut(s) 303, 527
Bst6I CTCTTC 2 cut(s) 379, 640
BstBI TTCGAA 3 cut(s) 60, 184, 195
BstC8I GCNNGC 3 cut(s) 592, 687, 758
BstDEI CTNAG 7 cut(s) 219, 318, 342, 520, 603, 642, 771
BstF5I GGATG 1 cut(s) 562
BstKTI GATC 6 cut(s) 24, 43, 76, 514, 519, 708
BstMBI GATC 6 cut(s) 21, 40, 73, 511, 516, 705
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 2 cut(s) 303, 527
BstSCI CCNGG 2 cut(s) 301, 525
BstSFI CTRYAG 3 cut(s) 459, 564, 683
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 2 cut(s) 395, 755
BstX2I RGATCY 3 cut(s) 21, 40, 516
BstYI RGATCY 3 cut(s) 21, 40, 516
BsuRI GGCC 2 cut(s) 594, 760
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 1 cut(s) 562
BtsI GCAGTG 2 cut(s) 363, 468
BtsIMutI CAGTG 3 cut(s) 227, 363, 468
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 3 cut(s) 592, 687, 758
Cfr13I GGNCC 2 cut(s) 305, 592
Csp6I GTAC 2 cut(s) 86, 455
CviAII CATG 3 cut(s) 124, 239, 497
CviQI GTAC 2 cut(s) 86, 455
DdeI CTNAG 7 cut(s) 219, 318, 342, 520, 603, 642, 771
DpnI GATC 6 cut(s) 23, 42, 75, 513, 518, 707
DpnII GATC 6 cut(s) 21, 40, 73, 511, 516, 705
DraI TTTAAA 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 379, 640
EarI CTCTTC 2 cut(s) 379, 640
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 301, 525
EcoT14I CCWWGG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 3 cut(s) 127, 242, 500
FaiI YATR 9 cut(s) 125, 141, 190, 240, 255, 404, 446, 498, 572
FatI CATG 3 cut(s) 123, 238, 496
FauI CCCGC 2 cut(s) 28, 583
FblI GTMKAC 2 cut(s) 226, 533
Fnu4HI GCNGC 1 cut(s) 581
FokI GGATG 1 cut(s) 569
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 581
FspBI CTAG 2 cut(s) 285, 784
GluI GCNGC 1 cut(s) 581
GsuI CTGGAG 2 cut(s) 112, 548
HaeIII GGCC 2 cut(s) 594, 760
Hin1II CATG 3 cut(s) 127, 242, 500
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 5 cut(s) 62, 147, 228, 530, 673
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 7, 227, 534
Hpy188I TCNGA 3 cut(s) 204, 319, 516
Hpy188III TCNNGA 3 cut(s) 19, 71, 91
Hpy8I GTNNAC 3 cut(s) 7, 227, 534
HpyAV CCTTC 2 cut(s) 67, 343
HpyCH4V TGCA 6 cut(s) 160, 295, 461, 580, 685, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 7 cut(s) 219, 318, 342, 520, 603, 642, 771
Hsp92II CATG 3 cut(s) 127, 242, 500
Kzo9I GATC 6 cut(s) 21, 40, 73, 511, 516, 705
LmnI GCTCC 3 cut(s) 259, 490, 493
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 1 cut(s) 472
MaeI CTAG 2 cut(s) 285, 784
MaeIII GTNAC 4 cut(s) 77, 232, 629, 733
MalI GATC 6 cut(s) 23, 42, 75, 513, 518, 707
MboI GATC 6 cut(s) 21, 40, 73, 511, 516, 705
MboII GAAGA 7 cut(s) 173, 366, 400, 627, 722, 757, 760
MflI RGATCY 3 cut(s) 21, 40, 516
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 5 cut(s) 170, 246, 500, 551, 647
MlyI GAGTC 3 cut(s) 156, 222, 539
MnlI CCTC 8 cut(s) 24, 89, 313, 379, 382, 438, 441, 771
Mph1103I ATGCAT 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 651
MspR9I CCNGG 2 cut(s) 303, 527
MvaI CCWGG 2 cut(s) 303, 527
MwoI GCNNNNNNNGC 1 cut(s) 580
NdeII GATC 6 cut(s) 21, 40, 73, 511, 516, 705
NlaIII CATG 3 cut(s) 127, 242, 500
NlaIV GGNNCC 1 cut(s) 261
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 232, 733
NsiI ATGCAT 1 cut(s) 697
NspV TTCGAA 3 cut(s) 60, 184, 195
PceI AGGCCT 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 62, 673
PfoI TCCNGGA 2 cut(s) 301, 525
PkrI GCNGC 1 cut(s) 582
PleI GAGTC 3 cut(s) 155, 222, 538
PpsI GAGTC 3 cut(s) 155, 222, 538
Psp6I CCWGG 2 cut(s) 301, 525
PspGI CCWGG 2 cut(s) 301, 525
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 2 cut(s) 305, 592
PstI CTGCAG 2 cut(s) 463, 687
PsuI RGATCY 3 cut(s) 21, 40, 516
RsaI GTAC 2 cut(s) 87, 456
RsaNI GTAC 2 cut(s) 86, 455
SalI GTCGAC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 1 cut(s) 581
Sau3AI GATC 6 cut(s) 21, 40, 73, 511, 516, 705
Sau96I GGNCC 2 cut(s) 305, 592
SbfI CCTGCAGG 1 cut(s) 687
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 3 cut(s) 156, 222, 539
ScrFI CCNGG 2 cut(s) 303, 527
SdaI CCTGCAGG 1 cut(s) 687
SduI GDGCHC 1 cut(s) 121
SetI ASST 5 cut(s) 157, 279, 286, 460, 571
SfaNI GCATC 1 cut(s) 472
SfcI CTRYAG 3 cut(s) 459, 564, 683
SfuI TTCGAA 3 cut(s) 60, 184, 195
SinI GGWCC 1 cut(s) 305
Sse8387I CCTGCAGG 1 cut(s) 687
Sse9I AATT 5 cut(s) 170, 246, 500, 551, 647
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 2 cut(s) 35, 590
SspMI CTAG 2 cut(s) 285, 784
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 2 cut(s) 301, 525
StyI CCWWGG 1 cut(s) 284
TaqI TCGA 6 cut(s) 60, 184, 195, 226, 409, 708
TasI AATT 5 cut(s) 170, 246, 500, 551, 647
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 2 cut(s) 62, 673
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 3 cut(s) 227, 370, 468
TseFI GTSAC 2 cut(s) 232, 733
TseI GCWGC 1 cut(s) 580
Tsp45I GTSAC 2 cut(s) 232, 733
TspDTI ATGAA 1 cut(s) 513
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 3 cut(s) 227, 370, 468
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 2 cut(s) 246, 647
XmaJI CCTAGG 1 cut(s) 284
XmiI GTMKAC 2 cut(s) 226, 533
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 285, 784
ZrmI AGTACT 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.