Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000169

Physical Location & Seq

Genomic Coordinates Reverse (-)

47665575 .. 47669994

Gene Structure 4420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0373800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGGAGCAGCAAATTGCAAAAGAAAAGCCTGCAATTGCTTTCGAGTATGAGCTCTTTGAGGGAGACCCTGATCATCTAACAACTGTTGTAGCTGCACTCACTCCAACTAGTCCCTGGATCAATCCTGCCTCATTGAACTTTAAGTACCGAATTGGACGAGGCCCCTTTGGTGATGTATGGTTAGCAACTCATCATCAGTCAGCAGATGATTATGATGAATATCATGAGGTAGCAGTTAAGATGTTGCATCCTTTGAAGGAGGAGGACAGAGAAAAGTTTCTGCTCAAGTTTGAAAAGTTATTTTTCAAGTTCCGCAGACTGTGCGGTGTTTGTTGGTTTCATGGTATCTCAATCATTGATGGAAGGATCTGCATCGCTATGAAATTTTATGAGGGGTCAGTTGGTGACCGAGTTGCTAGGTTGAAGGGTGGAAAACTTCAACTTTTTGATGTTTTAAGGTATGGGATTGAGTTGGCAAAAGGAATTTCAGAATTGCATTCACTAGGGCTTCTGGTGCTAAACTTGAAGCCGTCCAACATCCTTGTAGATGAACACGGCCAGGTGGTCCTTGGAGATTTTGGAATCCCATTTCTACTTCTTGGGGCTTCATTGTCTAATCCTAATATGGCTTTTAGACTTGGCACTCCGAACTACATGGCTCCAGAACAGTGGGAACCAGAAGTGAGGGGTCCTATATCTTTAGAAACAGATTCTTGGGGCTTTGGATGTTGCTTTGCAGAGATGTTGACTGGTAGTCAACCCTGGTTTGGGAGTTCAATTAAAGAGATATATCATTCAGTTGTGATCAAGCGAGAAAAGCCACCTGTTCCAAGTGGTTTGCCTCCTGCAGTGGAGAATGTTATCAACGGCTGCTTTGAGTATGATCTCCGTAATAGGCCTTCAATGGAAGATATCATACGTGCATTGGAAAGCTCACAAAAAGATGTTCAAAGCGATGGAGAATGGCTTGGTTTAGGGAGCAGCACACCTGCTGGAAAACTCAGTAGCGGTAGTTATAGTGCGTGGCATCTCTTAAAAGACGATCTCCAGGTTGGAGACATAGTTCGCTCCAGAAAGCCAGTAAATGCACGCAAGCGTCAAGCTCTTGATGTCCCTGAAGGAATTGTAACTGGCCTGGAAAGTGATTCTGGTAGTGCCCTGGTGAAGATCCCTCGAGCGCGCAAGCCTGTCAGAGTATCAGTGTTAACACTTGAGAGAGTCACATCTGGCTTGACAGCAGGTGATTGGGTGCGGTTGAAGGGAGAACTGCACAAGCACTCTCCTGTTGGAATTCTTCATTCTATACAACATGATGGAAGTGTTGCTGTTGGATTTATTGGGCTAGAGACTCTATGGAGAGGGAAATCATCTGACATTGAAATGGCTGATGCATATTATGTAGGAGAGTTTGTGAGGCTGAAGGCGAATGTGGCTTCTCCCAGATTTGAGTGGCCTCGTAAGGGTGGAGGTGGGGCATGGGCTACTGGAAGGATCTCACAAGTCCTTCCGAATGGTTGTCTGGTTGTGAGGTTCCCTGGAAGATTGGAATTTGGAGATGAAGCTCGTAGCTTCTTGGCAGATCCATATGAAGTAGAACTAGTGTCCTTTGATACTTGTCCTGGTCTGGTCAAAAAATATCAACATGTTGAGGATTTTCACTGGGCAGTCAGGCCACTTACAATTGCATTTGGTCTCTTTACAGCCATGAAGTTCAGCTTGTTTGTTGGACGAAATGTAAGCGCAAGGGTGAAAGGCCGAAGAAACTCACTACAGGGCCAGAGCGGTGGAAATTCAGCTTGGCTTCCTCCGCCGGTTGCAAATCTTTTCAAAGAAGGTTCTTCTACTGCTACTGCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

619

Amino Acids

68.52

Weight (kDa)

7.65

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	46 - 309	5.9e-31	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	48 - 306	2.7e-28	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis	RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata	RLG00000007550 RLG00000036731
rosa_multiflora	Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii	Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa	Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha	Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	997, 1229
Acc36I	ACCTGC	2 cut(s)	997, 1229
AccBSI	CCGCTC	1 cut(s)	1782
AccII	CGCG	1 cut(s)	1180
AciI	CCGC	6 cut(s)	313, 324, 1008, 1252, 1782, 1808
AclWI	GGATC	5 cut(s)	125, 374, 1162, 1499, 1574
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	5 cut(s)	383, 483, 1290, 1547, 1789
AcuI	CTGAAG	2 cut(s)	1137, 1439
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	767, 768, 1460
AflIII	ACRYGT	1 cut(s)	1642
AhdI	GACNNNNNGTC	1 cut(s)	753
AhlI	ACTAGT	2 cut(s)	107, 1597
AjnI	CCWGG	8 cut(s)	113, 558, 761, 1047, 1134, 1158, 1534, 1618
AjuI	GAANNNNNNNTTGG	2 cut(s)	1780, 1812
AloI	GAACNNNNNNTCC	2 cut(s)	1047, 1079
AluBI	AGCT	8 cut(s)	52, 92, 933, 1103, 1562, 1569, 1716, 1796
AluI	AGCT	8 cut(s)	52, 92, 933, 1103, 1562, 1569, 1716, 1796
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	4 cut(s)	57, 1050, 1340, 1697
AlwI	GGATC	5 cut(s)	125, 374, 1162, 1499, 1574
Ama87I	CYCGRG	1 cut(s)	1173
AoxI	GGCC	8 cut(s)	160, 556, 896, 1132, 1451, 1670, 1753, 1774
ApeKI	GCWGC	4 cut(s)	7, 92, 870, 981
ApoI	RAATTY	5 cut(s)	383, 483, 1290, 1547, 1789
Asp700I	GAANNNNTTC	1 cut(s)	276
AspLEI	GCGC	3 cut(s)	1180, 1182, 1742
AspS9I	GGNCC	4 cut(s)	161, 565, 689, 1774
AsuHPI	GGTGA	5 cut(s)	182, 416, 1174, 1253, 1759
AvaI	CYCGRG	1 cut(s)	1173
AvaII	GGWCC	2 cut(s)	565, 689
BaeGI	GKGCMC	1 cut(s)	1159
BanII	GRGCYC	1 cut(s)	54
BarI	GAAGNNNNNNTAC	4 cut(s)	883, 900, 915, 932
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	19, 79, 857, 993
BccI	CCATC	3 cut(s)	353, 950, 1307
BceAI	ACGGC	3 cut(s)	514, 571, 883
BciT130I	CCWGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
BclI	TGATCA	2 cut(s)	70, 804
BcoDI	GTCTC	4 cut(s)	57, 1050, 1340, 1697
BcuI	ACTAGT	2 cut(s)	107, 1597
BfaI	CTAG	6 cut(s)	108, 417, 503, 1343, 1598, 1854
BfmI	CTRYAG	2 cut(s)	846, 1769
BfuAI	ACCTGC	2 cut(s)	997, 1229
BisI	GCNGC	4 cut(s)	8, 93, 871, 982
BlsI	GCNGC	4 cut(s)	9, 94, 872, 983
Bme1390I	CCNGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
Bme18I	GGWCC	2 cut(s)	565, 689
BmeRI	GACNNNNNGTC	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	1173
BmgT120I	GGNCC	4 cut(s)	161, 565, 689, 1774
BmiI	GGNNCC	5 cut(s)	163, 660, 675, 690, 1532
BmrFI	CCNGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
BmrI	ACTGGG	1 cut(s)	1669
BmsI	GCATC	4 cut(s)	256, 381, 1036, 1378
BmuI	ACTGGG	1 cut(s)	1669
BpmI	CTGGAG	3 cut(s)	645, 1031, 1054
BpuEI	CTTGAG	2 cut(s)	269, 1232
BsaAI	YACGTR	1 cut(s)	920
BsaBI	GATNNNNATC	2 cut(s)	219, 371
BsaI	GGTCTC	2 cut(s)	57, 1697
BsaJI	CCNNGG	5 cut(s)	113, 568, 761, 1158, 1534
BsaXI	ACNNNNNCTCC	4 cut(s)	1047, 1077, 1395, 1425
Bsc4I	CCNNNNNNNGG	3 cut(s)	767, 768, 1460
Bse118I	RCCGGY	1 cut(s)	1810
Bse1I	ACTGG	5 cut(s)	754, 1079, 1135, 1489, 1664
Bse8I	GATNNNNATC	2 cut(s)	219, 371
BseBI	CCWGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
BseDI	CCNNGG	5 cut(s)	113, 568, 761, 1158, 1534
BseGI	GGATG	3 cut(s)	247, 537, 731
BseJI	GATNNNNATC	2 cut(s)	219, 371
BseLI	CCNNNNNNNGG	3 cut(s)	767, 768, 1460
BseMII	CTCAG	1 cut(s)	1015
BseNI	ACTGG	5 cut(s)	754, 1079, 1135, 1489, 1664
BsePI	GCGCGC	1 cut(s)	1178
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	1159
BseXI	GCAGC	4 cut(s)	19, 79, 857, 993
BsgI	GTGCAG	2 cut(s)	78, 1253
Bsh1236I	CGCG	1 cut(s)	1180
BshFI	GGCC	8 cut(s)	162, 558, 898, 1134, 1453, 1672, 1755, 1776
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	1173
BsiSI	CCGG	1 cut(s)	1811
BslFI	GGGAC	2 cut(s)	96, 1097
BslI	CCNNNNNNNGG	3 cut(s)	767, 768, 1460
BsmAI	GTCTC	4 cut(s)	57, 1050, 1340, 1697
BsmFI	GGGAC	2 cut(s)	96, 1097
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	8 cut(s)	162, 558, 898, 1134, 1453, 1672, 1755, 1776
Bso31I	GGTCTC	2 cut(s)	57, 1697
BsoBI	CYCGRG	1 cut(s)	1173
Bsp1286I	GDGCHC	2 cut(s)	54, 1159
Bsp143I	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
BspACI	CCGC	6 cut(s)	313, 324, 1008, 1252, 1782, 1808
BspANI	GGCC	8 cut(s)	162, 558, 898, 1134, 1453, 1672, 1755, 1776
BspCNI	CTCAG	1 cut(s)	1014
BspFNI	CGCG	1 cut(s)	1180
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	5 cut(s)	163, 660, 675, 690, 1532
BspMAI	CTGCAG	1 cut(s)	850
BspMI	ACCTGC	2 cut(s)	997, 1229
BspPI	GGATC	5 cut(s)	125, 374, 1162, 1499, 1574
BspTNI	GGTCTC	2 cut(s)	57, 1697
BsrBI	CCGCTC	1 cut(s)	1782
BsrFI	RCCGGY	1 cut(s)	1810
BsrI	ACTGG	5 cut(s)	754, 1079, 1135, 1489, 1664
BssAI	RCCGGY	1 cut(s)	1810
BssECI	CCNNGG	5 cut(s)	113, 568, 761, 1158, 1534
BssHII	GCGCGC	1 cut(s)	1178
BssMI	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
Bst4CI	ACNGT	3 cut(s)	85, 321, 669
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	5 cut(s)	30, 1090, 1094, 1180, 1184
BstDEI	CTNAG	1 cut(s)	1001
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	247, 537, 731
BstFNI	CGCG	1 cut(s)	1180
BstHHI	GCGC	3 cut(s)	1180, 1182, 1742
BstKTI	GATC	9 cut(s)	73, 120, 369, 807, 886, 1045, 1170, 1494, 1582
BstMAI	GTCTC	4 cut(s)	57, 1050, 1340, 1697
BstMBI	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
BstMWI	GCNNNNNNNGC	5 cut(s)	321, 514, 817, 1430, 1807
BstNI	CCWGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
BstNSI	RCATGY	1 cut(s)	1646
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	8 cut(s)	113, 558, 761, 1047, 1134, 1158, 1534, 1618
BstSFI	CTRYAG	2 cut(s)	846, 1769
BstSLI	GKGCMC	1 cut(s)	1159
BstUI	CGCG	1 cut(s)	1180
BstV1I	GCAGC	4 cut(s)	19, 79, 857, 993
BstX2I	RGATCY	4 cut(s)	366, 1167, 1491, 1579
BstXI	CCANNNNNNTGG	2 cut(s)	669, 1784
BstYI	RGATCY	4 cut(s)	366, 1167, 1491, 1579
BsuRI	GGCC	8 cut(s)	162, 558, 898, 1134, 1453, 1672, 1755, 1776
BtgZI	GCGATG	2 cut(s)	358, 969
BtsCI	GGATG	3 cut(s)	247, 537, 731
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	4 cut(s)	674, 855, 1206, 1657
BveI	ACCTGC	2 cut(s)	997, 1229
Cac8I	GCNNGC	5 cut(s)	30, 1090, 1094, 1180, 1184
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	3 cut(s)	1180, 1182, 1742
Cfr10I	RCCGGY	1 cut(s)	1810
Cfr13I	GGNCC	4 cut(s)	161, 565, 689, 1774
CseI	GACGC	1 cut(s)	1085
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	7 cut(s)	224, 341, 655, 1310, 1476, 1643, 1705
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	1001
DpnI	GATC	9 cut(s)	72, 119, 368, 806, 885, 1044, 1169, 1493, 1581
DpnII	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
DriI	GACNNNNNGTC	1 cut(s)	753
EaeI	YGGCCR	1 cut(s)	556
Eam1105I	GACNNNNNGTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	1797
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	568
Eco147I	AGGCCT	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	2 cut(s)	57, 1697
Eco32I	GATATC	1 cut(s)	913
Eco47I	GGWCC	2 cut(s)	565, 689
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	1137, 1439
Eco88I	CYCGRG	1 cut(s)	1173
Eco91I	GGTNACC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	2 cut(s)	161, 689
EcoO65I	GGTNACC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	1290
EcoRII	CCWGG	8 cut(s)	113, 558, 761, 1047, 1134, 1158, 1534, 1618
EcoRV	GATATC	1 cut(s)	913
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	1393
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	7 cut(s)	227, 344, 658, 1313, 1479, 1646, 1708
FalI	AAGNNNNNCTT	2 cut(s)	1700, 1732
FaqI	GGGAC	2 cut(s)	96, 1097
FatI	CATG	7 cut(s)	223, 340, 654, 1309, 1475, 1642, 1704
FauNDI	CATATG	1 cut(s)	1585
FbaI	TGATCA	2 cut(s)	70, 804
Fnu4HI	GCNGC	4 cut(s)	8, 93, 871, 982
FokI	GGATG	3 cut(s)	234, 524, 738
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	4 cut(s)	8, 93, 871, 982
FspBI	CTAG	6 cut(s)	108, 417, 503, 1343, 1598, 1854
GlaI	GCGC	3 cut(s)	1179, 1181, 1741
GluI	GCNGC	4 cut(s)	8, 93, 871, 982
GsuI	CTGGAG	3 cut(s)	645, 1031, 1054
HaeIII	GGCC	8 cut(s)	162, 558, 898, 1134, 1453, 1672, 1755, 1776
HapII	CCGG	1 cut(s)	1811
HgaI	GACGC	1 cut(s)	1085
HhaI	GCGC	3 cut(s)	1180, 1182, 1742
Hin1II	CATG	7 cut(s)	227, 344, 658, 1313, 1479, 1646, 1708
Hin6I	GCGC	3 cut(s)	1178, 1180, 1740
HinP1I	GCGC	3 cut(s)	1178, 1180, 1740
HincII	GTYRAC	3 cut(s)	747, 758, 1206
HindII	GTYRAC	3 cut(s)	747, 758, 1206
HinfI	GANTC	5 cut(s)	582, 710, 1145, 1218, 1348
HpaI	GTTAAC	1 cut(s)	1206
HpaII	CCGG	1 cut(s)	1811
HphI	GGTGA	5 cut(s)	182, 416, 1174, 1253, 1759
Hpy166II	GTNNAC	3 cut(s)	747, 758, 1206
Hpy188I	TCNGA	5 cut(s)	490, 648, 1193, 1372, 1509
Hpy188III	TCNNGA	4 cut(s)	224, 662, 1071, 1106
Hpy8I	GTNNAC	3 cut(s)	747, 758, 1206
HpyCH4III	ACNGT	3 cut(s)	85, 321, 669
HpyCH4IV	ACGT	1 cut(s)	919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	321, 514, 817, 1430, 1807
HpyF3I	CTNAG	1 cut(s)	1001
HpySE526I	ACGT	1 cut(s)	919
Hsp92II	CATG	7 cut(s)	227, 344, 658, 1313, 1479, 1646, 1708
HspAI	GCGC	3 cut(s)	1178, 1180, 1740
Ksp22I	TGATCA	2 cut(s)	70, 804
KspAI	GTTAAC	1 cut(s)	1206
Kzo9I	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
LmnI	GCTCC	4 cut(s)	4, 664, 978, 1073
Lsp1109I	GCAGC	4 cut(s)	19, 79, 857, 993
LweI	GCATC	4 cut(s)	256, 381, 1036, 1378
MaeI	CTAG	6 cut(s)	108, 417, 503, 1343, 1598, 1854
MaeII	ACGT	1 cut(s)	919
MaeIII	GTNAC	3 cut(s)	404, 1126, 1219
MalI	GATC	9 cut(s)	72, 119, 368, 806, 885, 1044, 1169, 1493, 1581
MbiI	CCGCTC	1 cut(s)	1782
MboI	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
MboII	GAAGA	6 cut(s)	920, 1177, 1286, 1551, 1770, 1830
MfeI	CAATTG	2 cut(s)	33, 1680
MflI	RGATCY	4 cut(s)	366, 1167, 1491, 1579
MhlI	GDGCHC	2 cut(s)	54, 1159
MlyI	GAGTC	2 cut(s)	1227, 1342
MmeI	TCCRAC	6 cut(s)	128, 558, 1033, 1267, 1309, 1705
Mph1103I	ATGCAT	1 cut(s)	1393
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	6 cut(s)	141, 237, 455, 780, 1034, 1205
MslI	CAYNNNNRTG	2 cut(s)	377, 1379
MspI	CCGG	1 cut(s)	1811
MspR9I	CCNGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
MunI	CAATTG	2 cut(s)	33, 1680
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
MvnI	CGCG	1 cut(s)	1180
MwoI	GCNNNNNNNGC	5 cut(s)	321, 514, 817, 1430, 1807
NdeI	CATATG	1 cut(s)	1585
NdeII	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
NlaIII	CATG	7 cut(s)	227, 344, 658, 1313, 1479, 1646, 1708
NlaIV	GGNNCC	5 cut(s)	163, 660, 675, 690, 1532
NmuCI	GTSAC	2 cut(s)	404, 1219
NsiI	ATGCAT	1 cut(s)	1393
NspI	RCATGY	1 cut(s)	1646
PaeR7I	CTCGAG	1 cut(s)	1173
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	2 cut(s)	997, 1229
PauI	GCGCGC	1 cut(s)	1178
PceI	AGGCCT	1 cut(s)	898
PciI	ACATGT	1 cut(s)	1642
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	582, 710, 1145
PkrI	GCNGC	4 cut(s)	9, 94, 872, 983
PleI	GAGTC	2 cut(s)	1226, 1342
PpsI	GAGTC	2 cut(s)	1226, 1342
Ppu21I	YACGTR	1 cut(s)	920
PpuMI	RGGWCCY	1 cut(s)	689
PscI	ACATGT	1 cut(s)	1642
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	689
Psp6I	CCWGG	8 cut(s)	113, 558, 761, 1047, 1134, 1158, 1534, 1618
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	8 cut(s)	113, 558, 761, 1047, 1134, 1158, 1534, 1618
PspN4I	GGNNCC	5 cut(s)	163, 660, 675, 690, 1532
PspPI	GGNCC	4 cut(s)	161, 565, 689, 1774
PspPPI	RGGWCCY	1 cut(s)	689
PspXI	VCTCGAGB	1 cut(s)	1173
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PstI	CTGCAG	1 cut(s)	850
PsuI	RGATCY	4 cut(s)	366, 1167, 1491, 1579
PteI	GCGCGC	1 cut(s)	1178
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	377, 1379
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	6 cut(s)	141, 237, 455, 780, 1034, 1205
SatI	GCNGC	4 cut(s)	8, 93, 871, 982
Sau3AI	GATC	9 cut(s)	70, 117, 366, 804, 883, 1042, 1167, 1491, 1579
Sau96I	GGNCC	4 cut(s)	161, 565, 689, 1774
SchI	GAGTC	2 cut(s)	1227, 1342
ScrFI	CCNGG	8 cut(s)	115, 560, 763, 1049, 1136, 1160, 1536, 1620
SduI	GDGCHC	2 cut(s)	54, 1159
SfaNI	GCATC	4 cut(s)	256, 381, 1036, 1378
SfcI	CTRYAG	2 cut(s)	846, 1769
Sfr274I	CTCGAG	1 cut(s)	1173
SinI	GGWCC	2 cut(s)	565, 689
SlaI	CTCGAG	1 cut(s)	1173
SmiMI	CAYNNNNRTG	2 cut(s)	377, 1379
SmlI	CTYRAG	3 cut(s)	284, 1173, 1211
SmoI	CTYRAG	3 cut(s)	284, 1173, 1211
SpeI	ACTAGT	2 cut(s)	107, 1597
SseBI	AGGCCT	1 cut(s)	898
SsiI	CCGC	6 cut(s)	313, 324, 1008, 1252, 1782, 1808
SspMI	CTAG	6 cut(s)	108, 417, 503, 1343, 1598, 1854
SstI	GAGCTC	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	898
StyD4I	CCNGG	8 cut(s)	113, 558, 761, 1047, 1134, 1158, 1534, 1618
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	85, 321, 669
TaiI	ACGT	1 cut(s)	922
TaqI	TCGA	2 cut(s)	42, 1174
TaqII	GACCGA	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	582, 710, 1145
Tru1I	TTAA	6 cut(s)	141, 237, 455, 780, 1034, 1205
Tru9I	TTAA	6 cut(s)	141, 237, 455, 780, 1034, 1205
TscAI	CASTG	4 cut(s)	674, 855, 1206, 1664
TseFI	GTSAC	2 cut(s)	404, 1219
TseI	GCWGC	4 cut(s)	7, 92, 870, 981
Tsp45I	GTSAC	2 cut(s)	404, 1219
TspDTI	ATGAA	9 cut(s)	231, 329, 395, 564, 597, 1286, 1572, 1602, 1721
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	4 cut(s)	674, 855, 1206, 1664
VpaK11BI	GGWCC	2 cut(s)	565, 689
XapI	RAATTY	5 cut(s)	383, 483, 1290, 1547, 1789
XceI	RCATGY	1 cut(s)	1646
XcmI	CCANNNNNNNNNTGG	2 cut(s)	111, 566
XhoI	CTCGAG	1 cut(s)	1173
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	6 cut(s)	108, 417, 503, 1343, 1598, 1854
Zsp2I	ATGCAT	1 cut(s)	1393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.