Rmu_sc0004617.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004617.1
OG0000169
Physical Location & Seq
Forward (+)
23417 .. 23899
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004617.1_g000006.1.cds

Sequence Viewer

Length: 483 bp
atgcatgacatctccaaacccattctctttgaacgtaagatcttcttggctgcaaggattgaactgatcttgaagtttcagtttgagcatctcaaaggtaggtattctcaatgcggcatgattacgcattcttgggccaaatgcacggaacttaatacgaccatctctacccctagggttatgcagtttggtggccctctaacgacaggtggatctttctccttttctgcccaggctagccgacaactcccaaaatccttctctgccttactcaagaagaaaaagcctgttattcgaaaattagacagatcaccatcagaatctgatctgtctgcgagttttatgcaagatagggttgctgaggaacctggtgagcctgatgtagtgcatcaactagaactaggtgggactgatgcttccatttcggtctccatggctggcggttttgaatccaatccacttgtccaagctgcacaagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.6

Weight (kDa)

8.98

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 114, 441
AclWI GGATC 1 cut(s) 220
AgsI TTSAA 4 cut(s) 32, 62, 73, 449
AjnI CCWGG 2 cut(s) 231, 367
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 2 cut(s) 135, 193
ApeKI GCWGC 2 cut(s) 50, 470
AspA2I CCTAGG 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 135, 194
AsuHPI GGTGA 2 cut(s) 303, 383
AsuII TTCGAA 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 236
AvrII CCTAGG 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 37, 457
BccI CCATC 2 cut(s) 170, 322
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 2 cut(s) 233, 369
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 4 cut(s) 174, 237, 395, 401
BglII AGATCT 1 cut(s) 39
BisI GCNGC 3 cut(s) 51, 115, 471
BlnI CCTAGG 1 cut(s) 173
BlsI GCNGC 3 cut(s) 52, 116, 472
Bme1390I CCNGG 2 cut(s) 233, 369
BmgT120I GGNCC 2 cut(s) 135, 194
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 233, 369
BmsI GCATC 3 cut(s) 97, 397, 403
BmtI GCTAGC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 257
BsaBI GATNNNNATC 1 cut(s) 313
BsaI GGTCTC 1 cut(s) 433
BsaJI CCNNGG 3 cut(s) 173, 231, 432
Bse8I GATNNNNATC 1 cut(s) 313
BseBI CCWGG 2 cut(s) 233, 369
BseDI CCNNGG 3 cut(s) 173, 231, 432
BseJI GATNNNNATC 1 cut(s) 313
BseMII CTCAG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 37, 457
BsgI GTGCAG 1 cut(s) 456
BshFI GGCC 2 cut(s) 137, 195
BslFI GGGAC 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 137, 195
Bso31I GGTCTC 1 cut(s) 433
Bsp119I TTCGAA 1 cut(s) 295
Bsp143I GATC 5 cut(s) 39, 66, 212, 308, 325
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 2 cut(s) 114, 441
BspANI GGCC 2 cut(s) 137, 195
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 366
BspOI GCTAGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 173, 231, 432
BssMI GATC 5 cut(s) 39, 66, 212, 308, 325
BssT1I CCWWGG 2 cut(s) 173, 432
Bst2UI CCWGG 2 cut(s) 233, 369
BstBI TTCGAA 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 238, 439
BstDEI CTNAG 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 432
BstKTI GATC 5 cut(s) 42, 69, 215, 311, 328
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 5 cut(s) 39, 66, 212, 308, 325
BstNI CCWGG 2 cut(s) 233, 369
BstSCI CCNGG 2 cut(s) 231, 367
BstV1I GCAGC 2 cut(s) 37, 457
BstX2I RGATCY 2 cut(s) 39, 212
BstYI RGATCY 2 cut(s) 39, 212
BsuRI GGCC 2 cut(s) 137, 195
BtgI CCRYGG 1 cut(s) 432
Cac8I GCNNGC 2 cut(s) 238, 439
CaiI CAGNNNCTG 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 135, 194
CsiI ACCWGGT 1 cut(s) 367
CviAII CATG 3 cut(s) 5, 118, 433
CviJI RGCY 9 cut(s) 50, 137, 195, 236, 240, 286, 376, 437, 470
CviKI_1 RGCY 9 cut(s) 50, 137, 195, 236, 240, 286, 376, 437, 470
DdeI CTNAG 1 cut(s) 360
DpnI GATC 5 cut(s) 41, 68, 214, 310, 327
DpnII GATC 5 cut(s) 39, 66, 212, 308, 325
Eco130I CCWWGG 2 cut(s) 173, 432
Eco31I GGTCTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 231, 367
EcoT14I CCWWGG 2 cut(s) 173, 432
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 173, 432
FaeI CATG 3 cut(s) 8, 121, 436
FaiI YATR 5 cut(s) 6, 119, 182, 344, 434
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 421
FatI CATG 3 cut(s) 4, 117, 432
Fnu4HI GCNGC 3 cut(s) 51, 115, 471
Fsp4HI GCNGC 3 cut(s) 51, 115, 471
FspBI CTAG 4 cut(s) 174, 237, 395, 401
GluI GCNGC 3 cut(s) 51, 115, 471
HaeIII GGCC 2 cut(s) 137, 195
Hin1II CATG 3 cut(s) 8, 121, 436
HinfI GANTC 2 cut(s) 320, 449
HphI GGTGA 2 cut(s) 303, 383
Hpy188I TCNGA 2 cut(s) 319, 325
Hpy188III TCNNGA 2 cut(s) 70, 274
HpyAV CCTTC 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 7 cut(s) 4, 53, 144, 184, 346, 388, 473
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 3 cut(s) 8, 121, 436
Kzo9I GATC 5 cut(s) 39, 66, 212, 308, 325
LpnPI CCDG 8 cut(s) 192, 218, 245, 300, 354, 381, 390, 423
Lsp1109I GCAGC 2 cut(s) 37, 457
LweI GCATC 3 cut(s) 97, 397, 403
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 4 cut(s) 174, 237, 395, 401
MaeII ACGT 1 cut(s) 34
MalI GATC 5 cut(s) 41, 68, 214, 310, 327
MboI GATC 5 cut(s) 39, 66, 212, 308, 325
MboII GAAGA 2 cut(s) 34, 289
MflI RGATCY 2 cut(s) 39, 212
MluCI AATT 1 cut(s) 299
MnlI CCTC 2 cut(s) 207, 355
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 233, 369
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 2 cut(s) 233, 369
NcoI CCATGG 1 cut(s) 432
NdeII GATC 5 cut(s) 39, 66, 212, 308, 325
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 3 cut(s) 8, 121, 436
NlaIV GGNNCC 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 295
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 320, 449
PkrI GCNGC 3 cut(s) 52, 116, 472
Psp6I CCWGG 2 cut(s) 231, 367
PspGI CCWGG 2 cut(s) 231, 367
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 135, 194
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 2 cut(s) 39, 212
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 51, 115, 471
Sau3AI GATC 5 cut(s) 39, 66, 212, 308, 325
Sau96I GGNCC 2 cut(s) 135, 194
ScrFI CCNGG 2 cut(s) 233, 369
SetI ASST 7 cut(s) 37, 100, 104, 211, 370, 406, 472
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 3 cut(s) 97, 397, 403
SfuI TTCGAA 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 1 cut(s) 299
SsiI CCGC 2 cut(s) 114, 441
SspMI CTAG 4 cut(s) 174, 237, 395, 401
StyD4I CCNGG 2 cut(s) 231, 367
StyI CCWWGG 2 cut(s) 173, 432
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 295
TaqII GACCGA 1 cut(s) 415
TasI AATT 1 cut(s) 299
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 320, 449
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 2 cut(s) 50, 470
TspGWI ACGGA 1 cut(s) 161
XmaJI CCTAGG 1 cut(s) 173
XspI CTAG 4 cut(s) 174, 237, 395, 401
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.