Rroxscaffold_3G00260090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000169
Physical Location & Seq
Forward (+)
54487099 .. 54493355
6257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260090.1

Sequence Viewer

Length: 432 bp
ATGGCTTCTATTGACGCGGTGACTACTAGCTTTGCCGCTTCTCTAGCACTTGCCGATGGAGGAAACGCTGCGGATCCGGGAAGGATTGGAGGAGGGCCTGTTCGCGTAGCCGAGGCGTTTTCGGAGAGCCTCGGCAAGGCGTTCGCCTTGAGGGGAGAATCTAATTCCGTTGGTGACTTAAATAACCACGAGATTATGCATCCTGCAGTACTTGGACCGGAAAGTGTTGTCGCATATTCTTCAAGTGGCTTGGAAATTAGTTCAAGTGGTTTGGGACAAAAATATTATGCAATGGCTCGACAACAAAGCCAACGAACAATATGTGGGAGGCCAATTAGTCTCAAGTTTTATCCCAAAACTAGACGATTACTTTGGTGGTGGGCTAGCCCAACAGACTGCCGCTTCCGCCGGGAGACCCTTTTCGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.35

Weight (kDa)

9.1

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 17, 105
AciI CCGC 5 cut(s) 17, 36, 71, 400, 406
AclWI GGATC 2 cut(s) 68, 81
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 243, 264
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 344, 407
AlwI GGATC 2 cut(s) 68, 81
AoxI GGCC 2 cut(s) 95, 329
ApeKI GCWGC 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AspS9I GGNCC 2 cut(s) 95, 215
AsuC2I CCSGG 2 cut(s) 78, 410
AsuHPI GGTGA 2 cut(s) 31, 185
AsuNHI GCTAGC 1 cut(s) 383
AvaII GGWCC 1 cut(s) 215
BamHI GGATCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BcnI CCSGG 2 cut(s) 78, 410
BcoDI GTCTC 2 cut(s) 344, 407
BfaI CTAG 4 cut(s) 27, 44, 360, 384
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 36, 69, 400
BlsI GCNGC 3 cut(s) 37, 70, 401
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 2 cut(s) 78, 410
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 95, 215
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 2 cut(s) 78, 410
BmsI GCATC 1 cut(s) 208
BmtI GCTAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 169, 326
BpuMI CCSGG 2 cut(s) 78, 410
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 111, 130
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 111, 130
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 2 cut(s) 17, 105
BshFI GGCC 2 cut(s) 97, 331
BsiSI CCGG 3 cut(s) 77, 218, 409
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 344, 407
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 2 cut(s) 97, 331
Bso31I GGTCTC 1 cut(s) 407
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 5 cut(s) 17, 36, 71, 400, 406
BspANI GGCC 2 cut(s) 97, 331
BspFNI CGCG 2 cut(s) 17, 105
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 208
BspOI GCTAGC 1 cut(s) 387
BspPI GGATC 2 cut(s) 68, 81
BspTNI GGTCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 111, 130
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 2 cut(s) 17, 105
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 2 cut(s) 344, 407
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 44, 405
BstSCI CCNGG 2 cut(s) 76, 408
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 2 cut(s) 17, 105
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 2 cut(s) 97, 331
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 95, 215
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 209
CviQI GTAC 1 cut(s) 209
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 201
FaiI YATR 4 cut(s) 197, 235, 288, 322
FaqI GGGAC 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 36, 69, 400
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 36, 69, 400
FspBI CTAG 4 cut(s) 27, 44, 360, 384
GluI GCNGC 3 cut(s) 36, 69, 400
HaeIII GGCC 2 cut(s) 97, 331
HapII CCGG 3 cut(s) 77, 218, 409
HgaI GACGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 158
HpaII CCGG 3 cut(s) 77, 218, 409
HphI GGTGA 2 cut(s) 31, 185
Hpy188I TCNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 199, 206, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 405
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 5 cut(s) 90, 111, 216, 231, 422
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 208
MaeI CTAG 4 cut(s) 27, 44, 360, 384
MaeIII GTNAC 2 cut(s) 19, 173
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 231
MflI RGATCY 1 cut(s) 73
MluCI AATT 3 cut(s) 163, 255, 333
MnlI CCTC 7 cut(s) 53, 83, 86, 106, 140, 144, 321
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 1 cut(s) 179
MspI CCGG 3 cut(s) 77, 218, 409
MspR9I CCNGG 2 cut(s) 78, 410
MvnI CGCG 2 cut(s) 17, 105
MwoI GCNNNNNNNGC 2 cut(s) 44, 405
NciI CCSGG 2 cut(s) 78, 410
NdeII GATC 1 cut(s) 73
NheI GCTAGC 1 cut(s) 383
NlaIV GGNNCC 1 cut(s) 75
NmeAIII GCCGAG 2 cut(s) 111, 136
NmuCI GTSAC 2 cut(s) 19, 173
NsiI ATGCAT 1 cut(s) 201
PfeI GAWTC 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 3 cut(s) 37, 70, 401
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 95, 215
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 3 cut(s) 36, 69, 400
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 2 cut(s) 95, 215
ScaI AGTACT 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 78, 410
SetI ASST 1 cut(s) 32
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 148, 341
SmoI CTYRAG 2 cut(s) 148, 341
Sse9I AATT 3 cut(s) 163, 255, 333
SsiI CCGC 5 cut(s) 17, 36, 71, 400, 406
SspI AATATT 1 cut(s) 284
SspMI CTAG 4 cut(s) 27, 44, 360, 384
StyD4I CCNGG 2 cut(s) 76, 408
TaqI TCGA 1 cut(s) 298
TasI AATT 3 cut(s) 163, 255, 333
TatI WGTACW 1 cut(s) 208
TauI GCSGC 2 cut(s) 38, 402
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 2 cut(s) 19, 173
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 2 cut(s) 19, 173
TspGWI ACGGA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 215
XagI CCTNNNNNAGG 1 cut(s) 134
XspI CTAG 4 cut(s) 27, 44, 360, 384
ZrmI AGTACT 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.