Rorug07G0163600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000169
Physical Location & Seq
Reverse (-)
13131650 .. 13135475
3826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0163600.1

Sequence Viewer

Length: 1167 bp
ATGGCAACCGAAGCACCGGAGCAAGTCCCCGCCGACGAAATCGAATCGATGTCGATCGCCGACTCTCAGTCGCAAGACCAGCCCGGAAGCTCGTCCGGTCCATCTGTCCCAATGAGTTTGGATGAGAGGTACGACCTACTTAGGAGCATCGCAGAGGAGTGTATCCAAGAAGAAGAGCTCAAGAATTTACTGGATAAGAAGGCCGAGCCGATCTGCTACGACGGCTTTGAGCCCTCCGGGAGAATGCATATCGCTCAGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGATTGCCGGAGGCTGCAGAGTGAAGATATGGATTGCCGATTGGTTTGCGCAGCTAAACAATAAGATGGGGGGTGATTTGAAGAAGATTGAGACTGTGGGGAAGTATTTTATTGAGATATGGAGGTCTGTGGGGATGAATCTGGACAGTGGGAAAGTTGAGTTTCTGTGGTCTTCTAAGGAGATCAATGCCAGGTCACATGAGTACTGGCCGCGTGTAATGGATATTGCCAGGAAAAACAAGCTTCCGAGGATCATTAGGTGTAGTCAAATTATGGGTCGAACGGATCAAGAAGAGTTAACTGCTGCCCAGATCTTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGGAGGCTGACATCTGTCAACTCGGTATGGATCAACGTAAAGTGAATGTGCTTGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAAGCCCATTATCTTGTCACACCATATGCTACCTGGTTTACAGCAAGGGCAGGAGAAAATGTCAAAAAGTGATCTATCCTCCTCCATATTTATGGAAGATGAAGAGGCGGAAGTGAATACAAAGATTAAGAAGGCTTACTGCCCTCCAGAAAAGGTTGAAGGCAATCCCTGTTTGGAATACGTACAGTACCTCATTTTTCCTTGGTTTCATGAGTTCACCGTAGAGCGCAGTGAAAAGAACGGTGGAGATAGGACTTTCACAAAGTTTGAAAAATTAAGTGCTGCTTATGCAAAAGGTGAGGTGCATCCTGGAGACCTCAAACCATCTTTGGCCAAAGCATTGAACAGAATACTGGAGCCTGTACGATCCCATTTCAAGAACGACAAAGCTGCCAAACAGCTATTACAAAGTGTAAAGAATTATAGAGTCACCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.23

Weight (kDa)

6.24

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 67 - 361 6e-61 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AccII CGCG 1 cut(s) 502
AciI CCGC 3 cut(s) 30, 500, 836
AclWI GGATC 4 cut(s) 548, 582, 678, 1089
AcoI YGGCCR 2 cut(s) 497, 1059
AcsI RAATTY 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 1164
AfaI GTAC 6 cut(s) 131, 494, 704, 912, 917, 1092
AgsI TTSAA 6 cut(s) 268, 370, 887, 998, 1072, 1105
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 6 cut(s) 479, 518, 639, 760, 1036, 1160
AluBI AGCT 6 cut(s) 90, 178, 343, 532, 1118, 1129
AluI AGCT 6 cut(s) 90, 178, 343, 532, 1118, 1129
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 374, 1035
AlwI GGATC 4 cut(s) 548, 582, 678, 1089
AoxI GGCC 3 cut(s) 201, 497, 1059
ApeKI GCWGC 5 cut(s) 303, 340, 593, 1010, 1118
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 2 cut(s) 340, 957
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 2 cut(s) 84, 238
AsuHPI GGTGA 4 cut(s) 374, 937, 1037, 1150
AvaII GGWCC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 1061
BanII GRGCYC 2 cut(s) 180, 234
BauI CACGAG 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 5 cut(s) 290, 352, 580, 997, 1105
BccI CCATC 3 cut(s) 109, 349, 1060
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 4 cut(s) 317, 351, 1100, 1134
BciT130I CCWGG 6 cut(s) 481, 520, 641, 762, 1038, 1162
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 2 cut(s) 84, 238
BcoDI GTCTC 2 cut(s) 374, 1035
BfmI CTRYAG 1 cut(s) 304
BfuI GTATCC 1 cut(s) 173
BglII AGATCT 1 cut(s) 600
BisI GCNGC 6 cut(s) 304, 341, 500, 594, 1011, 1119
BlsI GCNGC 6 cut(s) 305, 342, 501, 595, 1012, 1120
BmcAI AGTACT 2 cut(s) 494, 704
Bme1390I CCNGG 8 cut(s) 84, 238, 481, 520, 641, 762, 1038, 1162
Bme18I GGWCC 1 cut(s) 98
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 1086
BmrFI CCNGG 8 cut(s) 84, 238, 481, 520, 641, 762, 1038, 1162
BmsI GCATC 2 cut(s) 156, 1042
BoxI GACNNNNGTC 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 4 cut(s) 662, 858, 1059, 1103
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 84, 238
Bsa29I ATCGAT 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 910
BsaBI GATNNNNATC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 2 cut(s) 536, 929
BsaWI WCCGGW 2 cut(s) 16, 95
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bse1I ACTGG 3 cut(s) 195, 500, 1086
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 6 cut(s) 481, 520, 641, 762, 1038, 1162
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 536, 929
BseGI GGATG 3 cut(s) 127, 429, 1033
BseJI GATNNNNATC 1 cut(s) 53
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 2 cut(s) 80, 269
BseNI ACTGG 3 cut(s) 195, 500, 1086
BseRI GAGGAG 2 cut(s) 170, 799
BseXI GCAGC 5 cut(s) 290, 352, 580, 997, 1105
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 502
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 203, 499, 1061
BshVI ATCGAT 1 cut(s) 47
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 5 cut(s) 17, 84, 96, 237, 297
BslFI GGGAC 2 cut(s) 11, 92
BsmAI GTCTC 2 cut(s) 374, 1035
BsmFI GGGAC 2 cut(s) 11, 92
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 3 cut(s) 203, 499, 1061
Bso31I GGTCTC 1 cut(s) 1035
Bsp1286I GDGCHC 2 cut(s) 180, 234
Bsp143I GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
BspACI CCGC 3 cut(s) 30, 500, 836
BspANI GGCC 3 cut(s) 203, 499, 1061
BspCNI CTCAG 2 cut(s) 79, 268
BspDI ATCGAT 1 cut(s) 47
BspFNI CGCG 1 cut(s) 502
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 1 cut(s) 1086
BspMAI CTGCAG 1 cut(s) 308
BspPI GGATC 4 cut(s) 548, 582, 678, 1089
BspQI GCTCTTC 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 1035
BsrDI GCAATG 1 cut(s) 626
BsrI ACTGG 3 cut(s) 195, 500, 1086
BssECI CCNNGG 2 cut(s) 536, 929
BssMI GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 929
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 6 cut(s) 481, 520, 641, 762, 1038, 1162
Bst4CI ACNGT 6 cut(s) 385, 437, 707, 915, 949, 971
Bst6I CTCTTC 3 cut(s) 168, 576, 825
BstBAI YACGTR 1 cut(s) 910
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 4 cut(s) 66, 140, 255, 465
BstF5I GGATG 3 cut(s) 127, 429, 1033
BstFNI CGCG 1 cut(s) 502
BstHHI GCGC 2 cut(s) 340, 957
BstKTI GATC 9 cut(s) 57, 213, 474, 543, 577, 603, 673, 802, 1097
BstMAI GTCTC 2 cut(s) 374, 1035
BstMBI GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 11, 79, 222, 1016
BstNI CCWGG 6 cut(s) 481, 520, 641, 762, 1038, 1162
BstPAI GACNNNNGTC 1 cut(s) 654
BstSCI CCNGG 8 cut(s) 82, 236, 479, 518, 639, 760, 1036, 1160
BstSFI CTRYAG 1 cut(s) 304
BstSNI TACGTA 1 cut(s) 910
BstUI CGCG 1 cut(s) 502
BstV1I GCAGC 5 cut(s) 290, 352, 580, 997, 1105
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 1 cut(s) 600
Bsu15I ATCGAT 1 cut(s) 47
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 3 cut(s) 203, 499, 1061
BsuTUI ATCGAT 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 3 cut(s) 127, 429, 1033
BtsI GCAGTG 1 cut(s) 964
BtsIMutI CAGTG 2 cut(s) 442, 964
Cac8I GCNNGC 1 cut(s) 693
CciI TCATGA 1 cut(s) 937
CfoI GCGC 2 cut(s) 340, 957
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 47
CsiI ACCWGGT 2 cut(s) 760, 1160
Csp6I GTAC 6 cut(s) 130, 493, 703, 911, 916, 1091
CviAII CATG 2 cut(s) 488, 938
CviQI GTAC 6 cut(s) 130, 493, 703, 911, 916, 1091
DdeI CTNAG 4 cut(s) 66, 140, 255, 465
DpnI GATC 9 cut(s) 56, 212, 473, 542, 576, 602, 672, 801, 1096
DpnII GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
DraIII CACNNNGTG 1 cut(s) 1164
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 2 cut(s) 497, 1059
Eam1104I CTCTTC 3 cut(s) 168, 576, 825
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 3 cut(s) 168, 576, 825
EciI GGCGGA 1 cut(s) 851
Ecl136II GAGCTC 1 cut(s) 178
Eco105I TACGTA 1 cut(s) 910
Eco130I CCWWGG 1 cut(s) 929
Eco24I GRGCYC 2 cut(s) 180, 234
Eco31I GGTCTC 1 cut(s) 1035
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 6 cut(s) 479, 518, 639, 760, 1036, 1160
EcoT14I CCWWGG 1 cut(s) 929
EcoT22I ATGCAT 1 cut(s) 249
EcoT38I GRGCYC 2 cut(s) 180, 234
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 2 cut(s) 491, 941
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FaqI GGGAC 2 cut(s) 11, 92
FatI CATG 2 cut(s) 487, 937
FauI CCCGC 1 cut(s) 37
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 6 cut(s) 304, 341, 500, 594, 1011, 1119
FokI GGATG 3 cut(s) 134, 436, 1020
FriOI GRGCYC 2 cut(s) 180, 234
Fsp4HI GCNGC 6 cut(s) 304, 341, 500, 594, 1011, 1119
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 2 cut(s) 339, 956
GluI GCNGC 6 cut(s) 304, 341, 500, 594, 1011, 1119
GsuI CTGGAG 4 cut(s) 662, 858, 1059, 1103
HaeIII GGCC 3 cut(s) 203, 499, 1061
HapII CCGG 5 cut(s) 17, 84, 96, 237, 297
HhaI GCGC 2 cut(s) 340, 957
Hin1II CATG 2 cut(s) 491, 941
Hin6I GCGC 2 cut(s) 338, 955
HinP1I GCGC 2 cut(s) 338, 955
HincII GTYRAC 2 cut(s) 588, 659
HindII GTYRAC 2 cut(s) 588, 659
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 4 cut(s) 44, 62, 427, 1155
HpaI GTTAAC 1 cut(s) 588
HpaII CCGG 5 cut(s) 17, 84, 96, 237, 297
HphI GGTGA 4 cut(s) 374, 937, 1037, 1150
Hpy166II GTNNAC 5 cut(s) 283, 588, 659, 767, 945
Hpy188I TCNGA 1 cut(s) 537
Hpy188III TCNNGA 7 cut(s) 181, 431, 578, 718, 875, 938, 1105
Hpy8I GTNNAC 5 cut(s) 283, 588, 659, 767, 945
Hpy99I CGWCG 2 cut(s) 38, 224
HpyAV CCTTC 4 cut(s) 193, 262, 853, 881
HpyCH4III ACNGT 6 cut(s) 385, 437, 707, 915, 949, 971
HpyCH4IV ACGT 2 cut(s) 676, 909
HpyCH4V TGCA 7 cut(s) 247, 306, 619, 626, 695, 1019, 1033
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 79, 222, 1016
HpyF3I CTNAG 4 cut(s) 66, 140, 255, 465
HpySE526I ACGT 2 cut(s) 676, 909
Hsp92II CATG 2 cut(s) 491, 941
HspAI GCGC 2 cut(s) 338, 955
KspAI GTTAAC 1 cut(s) 588
Kzo9I GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 3 cut(s) 19, 144, 1084
Lsp1109I GCAGC 5 cut(s) 290, 352, 580, 997, 1105
LweI GCATC 2 cut(s) 156, 1042
MabI ACCWGGT 2 cut(s) 760, 1160
MaeII ACGT 2 cut(s) 676, 909
MaeIII GTNAC 3 cut(s) 483, 744, 1156
MalI GATC 9 cut(s) 56, 212, 473, 542, 576, 602, 672, 801, 1096
MboI GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 2 cut(s) 180, 234
MlsI TGGCCA 1 cut(s) 1061
MluCI AATT 5 cut(s) 184, 273, 558, 1001, 1147
MluNI TGGCCA 1 cut(s) 1061
MlyI GAGTC 2 cut(s) 56, 1164
Mox20I TGGCCA 1 cut(s) 1061
Mph1103I ATGCAT 1 cut(s) 249
MscI TGGCCA 1 cut(s) 1061
MseI TTAA 4 cut(s) 276, 587, 855, 1004
MslI CAYNNNNRTG 1 cut(s) 818
Msp20I TGGCCA 1 cut(s) 1061
MspI CCGG 5 cut(s) 17, 84, 96, 237, 297
MspR9I CCNGG 8 cut(s) 84, 238, 481, 520, 641, 762, 1038, 1162
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 6 cut(s) 481, 520, 641, 762, 1038, 1162
MvnI CGCG 1 cut(s) 502
MwoI GCNNNNNNNGC 4 cut(s) 11, 79, 222, 1016
NciI CCSGG 2 cut(s) 84, 238
NdeI CATATG 1 cut(s) 753
NdeII GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
NlaIII CATG 2 cut(s) 491, 941
NlaIV GGNNCC 1 cut(s) 1086
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 3 cut(s) 483, 744, 1156
NsbI TGCGCA 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 249
PagI TCATGA 1 cut(s) 937
PciSI GCTCTTC 1 cut(s) 168
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 44, 427
PfoI TCCNGGA 3 cut(s) 236, 639, 1036
PkrI GCNGC 6 cut(s) 305, 342, 501, 595, 1012, 1120
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 56, 1163
PpsI GAGTC 2 cut(s) 56, 1163
Ppu21I YACGTR 1 cut(s) 910
PshAI GACNNNNGTC 1 cut(s) 654
PshBI ATTAAT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 6 cut(s) 479, 518, 639, 760, 1036, 1160
PspGI CCWGG 6 cut(s) 479, 518, 639, 760, 1036, 1160
PspN4I GGNNCC 1 cut(s) 1086
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 600
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 6 cut(s) 131, 494, 704, 912, 917, 1092
RsaNI GTAC 6 cut(s) 130, 493, 703, 911, 916, 1091
RseI CAYNNNNRTG 1 cut(s) 818
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 276, 587, 855, 1004
SatI GCNGC 6 cut(s) 304, 341, 500, 594, 1011, 1119
Sau3AI GATC 9 cut(s) 54, 210, 471, 540, 574, 600, 670, 799, 1094
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 2 cut(s) 494, 704
SchI GAGTC 2 cut(s) 56, 1164
ScrFI CCNGG 8 cut(s) 84, 238, 481, 520, 641, 762, 1038, 1162
SduI GDGCHC 2 cut(s) 180, 234
SexAI ACCWGGT 2 cut(s) 760, 1160
SfaNI GCATC 2 cut(s) 156, 1042
SfcI CTRYAG 1 cut(s) 304
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SnaBI TACGTA 1 cut(s) 910
Sse9I AATT 5 cut(s) 184, 273, 558, 1001, 1147
SsiI CCGC 3 cut(s) 30, 500, 836
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 8 cut(s) 82, 236, 479, 518, 639, 760, 1036, 1160
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 6 cut(s) 385, 437, 707, 915, 949, 971
TaiI ACGT 2 cut(s) 679, 912
TaqI TCGA 4 cut(s) 42, 47, 53, 568
TasI AATT 5 cut(s) 184, 273, 558, 1001, 1147
TatI WGTACW 2 cut(s) 492, 702
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 2 cut(s) 44, 427
Tru1I TTAA 4 cut(s) 276, 587, 855, 1004
Tru9I TTAA 4 cut(s) 276, 587, 855, 1004
TscAI CASTG 2 cut(s) 442, 964
TseFI GTSAC 3 cut(s) 483, 744, 1156
TseI GCWGC 5 cut(s) 303, 340, 593, 1010, 1118
Tsp45I GTSAC 3 cut(s) 483, 744, 1156
TspDTI ATGAA 3 cut(s) 440, 843, 926
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 2 cut(s) 442, 964
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
ZrmI AGTACT 2 cut(s) 494, 704
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.