Rmu_sc0002553.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002553.1
OG0000169
Physical Location & Seq
Forward (+)
114946 .. 115839
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002553.1_g000024.1.cds

Sequence Viewer

Length: 834 bp
atgcgcatcttcttcatgcatgacatctccaaacctatcctctttgagcgtaagatcttcttggatacaaagattgaaccaatcttgaagtttcagtttgagcatctcaaaggtaggtgttctcaatgcggcctgcttactcatttgggggttaaatgtatggcacccaacccagccatctccacccctagggttataccttttggtggtcctccaattgcaggtggaactttctctttttcagcgggggttaaatgtatggcactcaacccagccatctccacccctagggttataccttttggtggtcctccaattgcaggtggaactttctctttttcagcccaggccagccgagaactcccacaaccctcctctgccttgttcaagaagaaaaagcctgtaatccgaaagctagacagatcattatcagaagttgatccatccgggagtcccgtgcctgatatggttgctgaggaaattgatgaacctgtaggagcaccacagatagagcaggttgggaccgatgcttctggttcggccttcagggttaggagttccgagactggaggttgcactccctccccaaagaaactcaagacaatcctgggtggtaagatacccatactgcaagcagatgccctagggttgattgaagctgctattgagagtgaacaaggaattctgaagaagaaggttggaagacgtctaggaagcaagaacaaacatcctcgcccacagaagaagatgagtgggactttgcgtctgacttactcttcggttgatgtttctcatgagagtagccctaagaataagggcaaaggaaagccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

29.66

Weight (kDa)

9.9

Isoelectric Point (pI)

58.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 212, 311
AatII GACGTC 1 cut(s) 709
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 3 cut(s) 212, 311, 505
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 2 cut(s) 129, 245
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 681
AcuI CTGAAG 2 cut(s) 529, 707
AcyI GRCGYC 1 cut(s) 706
AfiI CCNNNNNNNGG 6 cut(s) 189, 206, 221, 288, 305, 320
AgsI TTSAA 4 cut(s) 77, 88, 388, 656
AhdI GACNNNNNGTC 1 cut(s) 762
AjnI CCWGG 2 cut(s) 345, 606
AluBI AGCT 2 cut(s) 415, 659
AluI AGCT 2 cut(s) 415, 659
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 1 cut(s) 434
AoxI GGCC 3 cut(s) 130, 348, 540
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 681
ArsI GACNNNNNNTTYG 2 cut(s) 760, 792
AspA2I CCTAGG 3 cut(s) 188, 287, 643
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 209, 308, 522
AsuC2I CCSGG 1 cut(s) 448
AvaII GGWCC 3 cut(s) 209, 308, 522
AvrII CCTAGG 3 cut(s) 188, 287, 643
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 709
Bbv12I GWGCWC 1 cut(s) 502
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 1 cut(s) 646
BccI CCATC 3 cut(s) 185, 284, 451
BciT130I CCWGG 2 cut(s) 347, 608
BciVI GTATCC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 5 cut(s) 189, 288, 416, 644, 710
BfmI CTRYAG 1 cut(s) 492
BfuAI ACCTGC 3 cut(s) 212, 311, 505
BfuI GTATCC 1 cut(s) 58
BglII AGATCT 1 cut(s) 54
BisI GCNGC 2 cut(s) 130, 660
BlnI CCTAGG 3 cut(s) 188, 287, 643
BlsI GCNGC 2 cut(s) 131, 661
Bme1390I CCNGG 3 cut(s) 347, 448, 608
Bme18I GGWCC 3 cut(s) 209, 308, 522
BmeRI GACNNNNNGTC 1 cut(s) 762
BmgT120I GGNCC 3 cut(s) 209, 308, 522
BmiI GGNNCC 2 cut(s) 165, 523
BmrFI CCNGG 3 cut(s) 347, 448, 608
BmsI GCATC 4 cut(s) 15, 112, 517, 628
BpiI GAAGAC 1 cut(s) 709
BpmI CTGGAG 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 448
BsaBI GATNNNNATC 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 706
BsaJI CCNNGG 5 cut(s) 188, 287, 345, 607, 643
Bsc4I CCNNNNNNNGG 6 cut(s) 189, 206, 221, 288, 305, 320
Bse1I ACTGG 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 427
BseBI CCWGG 2 cut(s) 347, 608
BseDI CCNNGG 5 cut(s) 188, 287, 345, 607, 643
BseGI GGATG 2 cut(s) 443, 727
BseJI GATNNNNATC 1 cut(s) 427
BseLI CCNNNNNNNGG 6 cut(s) 189, 206, 221, 288, 305, 320
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 646
BseYI CCCAGC 2 cut(s) 172, 271
BshFI GGCC 3 cut(s) 132, 350, 542
BshNI GGYRCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 3 cut(s) 438, 535, 769
BslI CCNNNNNNNGG 6 cut(s) 189, 206, 221, 288, 305, 320
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 3 cut(s) 438, 535, 769
BsnI GGCC 3 cut(s) 132, 350, 542
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 3 cut(s) 54, 422, 439
BspACI CCGC 2 cut(s) 129, 245
BspANI GGCC 3 cut(s) 132, 350, 542
BspCNI CTCAG 1 cut(s) 466
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 165, 523
BspMI ACCTGC 3 cut(s) 212, 311, 505
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 163
BsrI ACTGG 1 cut(s) 571
BssECI CCNNGG 5 cut(s) 188, 287, 345, 607, 643
BssMI GATC 3 cut(s) 54, 422, 439
BssNI GRCGYC 1 cut(s) 706
BssT1I CCWWGG 3 cut(s) 188, 287, 643
Bst2UI CCWGG 2 cut(s) 347, 608
Bst6I CTCTTC 1 cut(s) 781
BstACI GRCGYC 1 cut(s) 706
BstC8I GCNNGC 3 cut(s) 134, 352, 633
BstDEI CTNAG 2 cut(s) 474, 807
BstF5I GGATG 2 cut(s) 443, 727
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 3 cut(s) 57, 425, 442
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 3 cut(s) 54, 422, 439
BstNI CCWGG 2 cut(s) 347, 608
BstSCI CCNGG 3 cut(s) 345, 446, 606
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 1 cut(s) 709
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 3 cut(s) 132, 350, 542
BtsCI GGATG 2 cut(s) 443, 727
BveI ACCTGC 3 cut(s) 212, 311, 505
Cac8I GCNNGC 3 cut(s) 134, 352, 633
CciI TCATGA 1 cut(s) 793
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 209, 308, 522
CseI GACGC 1 cut(s) 752
CviAII CATG 3 cut(s) 16, 20, 794
DdeI CTNAG 2 cut(s) 474, 807
DpnI GATC 3 cut(s) 56, 424, 441
DpnII GATC 3 cut(s) 54, 422, 439
DriI GACNNNNNGTC 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 781
Eam1105I GACNNNNNGTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 781
Eco130I CCWWGG 3 cut(s) 188, 287, 643
Eco47I GGWCC 3 cut(s) 209, 308, 522
Eco57I CTGAAG 2 cut(s) 529, 707
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 2 cut(s) 345, 606
EcoT14I CCWWGG 3 cut(s) 188, 287, 643
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 3 cut(s) 188, 287, 643
FaeI CATG 3 cut(s) 19, 23, 797
FaiI YATR 9 cut(s) 17, 21, 161, 197, 260, 296, 467, 626, 795
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 3 cut(s) 438, 535, 769
FatI CATG 3 cut(s) 15, 19, 793
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 130, 660
FokI GGATG 2 cut(s) 430, 714
Fsp4HI GCNGC 2 cut(s) 130, 660
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 5 cut(s) 189, 288, 416, 644, 710
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 130, 660
GsaI CCCAGC 2 cut(s) 176, 275
GsuI CTGGAG 1 cut(s) 588
HaeIII GGCC 3 cut(s) 132, 350, 542
HapII CCGG 1 cut(s) 447
HgaI GACGC 1 cut(s) 752
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 706
Hin1II CATG 3 cut(s) 19, 23, 797
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 451
HpaII CCGG 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 674
Hpy188I TCNGA 5 cut(s) 410, 433, 562, 687, 768
Hpy188III TCNNGA 4 cut(s) 85, 388, 598, 794
Hpy8I GTNNAC 1 cut(s) 674
HpyAV CCTTC 2 cut(s) 553, 688
HpyCH4IV ACGT 1 cut(s) 706
HpyCH4V TGCA 5 cut(s) 19, 221, 320, 576, 631
HpyF3I CTNAG 2 cut(s) 474, 807
HpySE526I ACGT 1 cut(s) 706
Hsp92I GRCGYC 1 cut(s) 706
Hsp92II CATG 3 cut(s) 19, 23, 797
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 54, 422, 439
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 4 cut(s) 15, 112, 517, 628
MaeI CTAG 5 cut(s) 189, 288, 416, 644, 710
MaeII ACGT 1 cut(s) 706
MalI GATC 3 cut(s) 56, 424, 441
MboI GATC 3 cut(s) 54, 422, 439
MboII GAAGA 9 cut(s) 4, 49, 403, 700, 703, 714, 754, 757, 768
MfeI CAATTG 2 cut(s) 216, 315
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 4 cut(s) 216, 315, 480, 681
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 9 cut(s) 50, 222, 321, 382, 385, 469, 563, 592, 741
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 2 cut(s) 153, 252
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 3 cut(s) 347, 448, 608
MunI CAATTG 2 cut(s) 216, 315
MvaI CCWGG 2 cut(s) 347, 608
NciI CCSGG 1 cut(s) 448
NdeII GATC 3 cut(s) 54, 422, 439
NlaIII CATG 3 cut(s) 19, 23, 797
NlaIV GGNNCC 2 cut(s) 165, 523
NmeAIII GCCGAG 1 cut(s) 380
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 21
PagI TCATGA 1 cut(s) 793
PaqCI CACCTGC 2 cut(s) 212, 311
PfoI TCCNGGA 1 cut(s) 446
PkrI GCNGC 2 cut(s) 131, 661
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 345, 606
PspFI CCCAGC 2 cut(s) 172, 271
PspGI CCWGG 2 cut(s) 345, 606
PspN4I GGNNCC 2 cut(s) 165, 523
PspPI GGNCC 3 cut(s) 209, 308, 522
PsuI RGATCY 1 cut(s) 54
SaqAI TTAA 2 cut(s) 153, 252
SatI GCNGC 2 cut(s) 130, 660
Sau3AI GATC 3 cut(s) 54, 422, 439
Sau96I GGNCC 3 cut(s) 209, 308, 522
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 347, 448, 608
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 4 cut(s) 15, 112, 517, 628
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 3 cut(s) 209, 308, 522
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 4 cut(s) 216, 315, 480, 681
SsiI CCGC 2 cut(s) 129, 245
SspMI CTAG 5 cut(s) 189, 288, 416, 644, 710
StyD4I CCNGG 3 cut(s) 345, 446, 606
StyI CCWWGG 3 cut(s) 188, 287, 643
TaiI ACGT 1 cut(s) 709
TaqII GACCGA 1 cut(s) 539
TasI AATT 4 cut(s) 216, 315, 480, 681
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 2 cut(s) 153, 252
Tru9I TTAA 2 cut(s) 153, 252
TseI GCWGC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 4, 501
VpaK11BI GGWCC 3 cut(s) 209, 308, 522
XapI RAATTY 1 cut(s) 681
XmaJI CCTAGG 3 cut(s) 188, 287, 643
XspI CTAG 5 cut(s) 189, 288, 416, 644, 710
ZraI GACGTC 1 cut(s) 707
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.