Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019370.1

Orthogroup ID

OG0000169

Physical Location & Seq

Genomic Coordinates Forward (+)

11089 .. 13528

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019370.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgatgatgtccgttgcgtcgtcgccgagaaagtccataacggagaaagtgtttgagagggtccgaggggtttcttacctgagcagttatctcaagaacaacaatggtcataaccaccaccatcacagaaaagttgagagtgatgacgatgaggggactatggagcttgtgcagattggtgctgagaggaccaagaacgttttgattctgataagtgataccgacggcggacatagagcttccgcggaggcgatcaacaatgcgtttcgtttggagacgaatacaggtagtgcctcctcttctcctagatttcttctctacgtctctcaccctcaaccctcactcatccacatggcctccattgatgctatcaccgctagttgtgctgcctcccttacgcatgcagagggaggtagtgcgcctgatctggggagaattggtggcggccctattcgtcggtcttccaaatattttctgattgcgacgcctctgacctaccgaccggtcaacctacgaccttcaaggctcacctcctttgtacttggatggatgtcactctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009267 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009707 GO:0009941 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016740 GO:0016757 GO:0016758 GO:0019374 GO:0019752 GO:0019867 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0033554 GO:0035250 GO:0042170 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0098588 GO:0098805 GO:1901135 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_tran_28_C MGDG_synth

Protein Analysis

187

Amino Acids

20.46

Weight (kDa)

9.41

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis	RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata	RLG00000007550 RLG00000036731
rosa_multiflora	Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii	Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa	Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha	Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	5 cut(s)	228, 243, 245, 375, 444
AclI	AACGTT	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	1 cut(s)	540
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	522
AleI	CACNNNNGTG	1 cut(s)	559
AluBI	AGCT	2 cut(s)	166, 239
AluI	AGCT	2 cut(s)	166, 239
Alw26I	GTCTC	2 cut(s)	269, 328
AoxI	GGCC	2 cut(s)	354, 445
ApeKI	GCWGC	1 cut(s)	386
AsiGI	ACCGGT	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	3 cut(s)	61, 189, 446
AsuHPI	GGTGA	3 cut(s)	320, 364, 520
AvaII	GGWCC	2 cut(s)	61, 189
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	129, 540
BceAI	ACGGC	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	269, 328
BfaI	CTAG	2 cut(s)	306, 378
BisI	GCNGC	2 cut(s)	387, 445
BlsI	GCNGC	2 cut(s)	388, 446
Bme18I	GGWCC	2 cut(s)	61, 189
BmgT120I	GGNCC	3 cut(s)	61, 189, 446
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	77
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	2 cut(s)	64, 243
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 341, 371, 424, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	64, 243
BseGI	GGATG	3 cut(s)	345, 551, 555
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	71, 174
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	503
BshFI	GGCC	2 cut(s)	356, 447
BshTI	ACCGGT	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	269, 328
BsmBI	CGTCTC	2 cut(s)	269, 328
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	356, 447
Bsp143I	GATC	2 cut(s)	252, 424
BspACI	CCGC	5 cut(s)	228, 243, 245, 375, 444
BspANI	GGCC	2 cut(s)	356, 447
BspCNI	CTCAG	2 cut(s)	72, 175
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	64, 243
BssMI	GATC	2 cut(s)	252, 424
BssNI	GRCGYC	1 cut(s)	485
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	80, 183
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	3 cut(s)	345, 551, 555
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	255, 427
BstMAI	GTCTC	2 cut(s)	269, 328
BstMBI	GATC	2 cut(s)	252, 424
BstMCI	CGRYCG	1 cut(s)	503
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNSI	RCATGY	1 cut(s)	404
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	356, 447
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	345, 551, 555
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	3 cut(s)	61, 189, 446
Cfr42I	CCGCGG	1 cut(s)	246
CseI	GACGC	2 cut(s)	6, 493
Csp6I	GTAC	1 cut(s)	539
CspAI	ACCGGT	1 cut(s)	502
CviAII	CATG	2 cut(s)	352, 401
CviJI	RGCY	5 cut(s)	166, 239, 356, 447, 526
CviKI_1	RGCY	5 cut(s)	166, 239, 356, 447, 526
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	2 cut(s)	80, 183
DpnI	GATC	2 cut(s)	254, 426
DpnII	GATC	2 cut(s)	252, 424
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	61, 189
Esp3I	CGTCTC	2 cut(s)	269, 328
FaeI	CATG	2 cut(s)	355, 404
FaiI	YATR	6 cut(s)	38, 111, 161, 234, 353, 402
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	351, 400
Fnu4HI	GCNGC	2 cut(s)	387, 445
FokI	GGATG	2 cut(s)	332, 558
Fsp4HI	GCNGC	2 cut(s)	387, 445
FspBI	CTAG	2 cut(s)	306, 378
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	2 cut(s)	387, 445
HaeIII	GGCC	2 cut(s)	356, 447
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	2 cut(s)	6, 493
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	355, 404
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	3 cut(s)	320, 364, 520
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	4 cut(s)	65, 210, 477, 492
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	5 cut(s)	22, 25, 227, 459, 487
HpyAV	CCTTC	1 cut(s)	528
HpyCH4IV	ACGT	2 cut(s)	198, 321
HpyCH4V	TGCA	2 cut(s)	172, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
HpyF3I	CTNAG	2 cut(s)	80, 183
HpySE526I	ACGT	2 cut(s)	198, 321
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	2 cut(s)	355, 404
HspAI	GCGC	1 cut(s)	419
KspI	CCGCGG	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	252, 424
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	6 cut(s)	92, 270, 413, 435, 516, 544
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	306, 378
MaeII	ACGT	2 cut(s)	198, 321
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	2 cut(s)	254, 426
MboI	GATC	2 cut(s)	252, 424
MboII	GAAGA	3 cut(s)	291, 305, 453
MluCI	AATT	1 cut(s)	435
MslI	CAYNNNNRTG	2 cut(s)	350, 559
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NdeII	GATC	2 cut(s)	252, 424
NlaIII	CATG	2 cut(s)	355, 404
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	552
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	388, 446
Psp1406I	AACGTT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	61, 189, 446
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	350, 559
SacII	CCGCGG	1 cut(s)	246
SatI	GCNGC	2 cut(s)	387, 445
Sau3AI	GATC	2 cut(s)	252, 424
Sau96I	GGNCC	3 cut(s)	61, 189, 446
SfaNI	GCATC	1 cut(s)	355
Sfr303I	CCGCGG	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	246
SinI	GGWCC	2 cut(s)	61, 189
SmiMI	CAYNNNNRTG	2 cut(s)	350, 559
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	5 cut(s)	228, 243, 245, 375, 444
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	2 cut(s)	306, 378
TaiI	ACGT	2 cut(s)	201, 324
TaqII	GACCGA	1 cut(s)	447
TasI	AATT	1 cut(s)	435
TatI	WGTACW	1 cut(s)	538
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	61, 189
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	2 cut(s)	306, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.