Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

426812 .. 427185

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTGTAGTCAGCTTTCCTGCGAATTTAAAGCGCAGATCTTTTTCTCTGAGCCCGGTGAATGGAGGGAGTTCATTCTATCATCCCCATCAGCCTTTTGGGCAGCACTGTTGGGTCGGTGTATTGGCGTTGCTTCCAACAGAATGCTGTATTGGCTGAGCCATGGAGGAGACTTTATTGTTGGGCTGGATCCTTTCATGATCGATAACAATGATAATACTAGTTCATCTACTACAAGAAGTACTGTTTTTTTCAGTGAAGGTGACGAGGGGGATTGTGTCCCAATAGAGTGCCTAGATACGCTTGACGGGTGTCCGCGGCTGTGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

4.22

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	316
AciI	CCGC	2 cut(s)	314, 316
AclWI	GGATC	2 cut(s)	182, 195
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	60
AhlI	ACTAGT	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	182, 195
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	68, 272
BamHI	GGATCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	219, 293
BglI	GCCNNNNNGGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	2 cut(s)	102, 317
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	103, 318
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	54
BoxI	GACNNNNGTC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	54
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	160, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	160, 314
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	39, 146
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	36, 187, 198
Bsp1720I	GCTNAGC	1 cut(s)	155
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	2 cut(s)	314, 316
BspCNI	CTCAG	2 cut(s)	40, 147
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	182, 195
BssECI	CCNNGG	2 cut(s)	160, 314
BssMI	GATC	3 cut(s)	36, 187, 198
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	108, 244
BstDEI	CTNAG	2 cut(s)	48, 155
BstDSI	CCRYGG	2 cut(s)	160, 314
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	3 cut(s)	39, 190, 201
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	3 cut(s)	36, 187, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 151
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	36, 187
BstYI	RGATCY	2 cut(s)	36, 187
Bsu15I	ATCGAT	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	160, 314
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	104, 259
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	1 cut(s)	34
Cfr42I	CCGCGG	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	161, 196
CviJI	RGCY	7 cut(s)	13, 52, 92, 154, 159, 184, 319
CviKI_1	RGCY	7 cut(s)	13, 52, 92, 154, 159, 184, 319
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	2 cut(s)	48, 155
DpnI	GATC	3 cut(s)	38, 189, 200
DpnII	GATC	3 cut(s)	36, 187, 198
DraI	TTTAAA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	164, 199
FaiI	YATR	2 cut(s)	162, 197
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	160, 195
Fnu4HI	GCNGC	2 cut(s)	102, 317
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	102, 317
FspBI	CTAG	2 cut(s)	219, 293
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	102, 317
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	2 cut(s)	164, 199
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	68, 272
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	108, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 151
HpyF3I	CTNAG	2 cut(s)	48, 155
Hsp92II	CATG	2 cut(s)	164, 199
HspAI	GCGC	1 cut(s)	32
KspI	CCGCGG	1 cut(s)	317
Kzo9I	GATC	3 cut(s)	36, 187, 198
LpnPI	CCDG	3 cut(s)	31, 67, 170
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	219, 293
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	38, 189, 200
MboI	GATC	3 cut(s)	36, 187, 198
MflI	RGATCY	2 cut(s)	36, 187
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	57, 158, 259
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	98, 151
NciI	CCSGG	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	3 cut(s)	36, 187, 198
NlaIII	CATG	2 cut(s)	164, 199
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	260
PagI	TCATGA	1 cut(s)	195
PctI	GAATGC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	103, 318
PshAI	GACNNNNGTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	36, 187
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	102, 317
Sau3AI	GATC	3 cut(s)	36, 187, 198
ScaI	AGTACT	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	2 cut(s)	15, 262
Sfr303I	CCGCGG	1 cut(s)	317
SgrBI	CCGCGG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	2 cut(s)	314, 316
SspMI	CTAG	2 cut(s)	219, 293
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	108, 244
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	111, 259
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	61, 184, 213
TspRI	CASTG	2 cut(s)	111, 259
XapI	RAATTY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XspI	CTAG	2 cut(s)	219, 293
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.