Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Reverse (-)

33788 .. 35038

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggatgaactccttacggcagatttgttcgaaagattgtggagattcttcaaactcaagaagaagatgaagaaattacaagtgctagctacatggaatgacttggttctctgctgcacattcaaacagtcgtatctgcattactacatctgcaatccaaggaccatgcaactggttcatcttcctccgatctttgtatggagatgggtcagtgaggctgctgtgggattcatttgtgagcccaaggaagaagaagacagacccgccgccgacggtgataaaaaagaagaaaggaaagtgattaaaattcatgccgagtataagtgcaaggttgtgagaattcttcctcctattgacagggaaaaactttgtttcgaattcaagattcaggtcttctctagtgagattggtgtgtggagagaatcagtagtatcatgtccacgcggctttatctttcgccaacttgtgtcccaatttggcgttgctaccaatggaatgctatattggtgtgattataagcatggtgatctgcttgggttgggaccgttgatgatcaacaacaagagtactactgctaatggtgattttggctatcaatttcatgttattaaacttgatcagcagcttgatcttcatttttcttcattttattaccttcgtgggcaccggggacgtctgcagttggtgcagacggtgaagaatgagctccccataggcgctaggctattggtttgggagttggaaaaagaagaactagaacaaatcgcggtacaagggggtggagaactgggtcagaatcactggaaaacttataatatactggaccaagtaatacttactagggtgaggtatgtaggttttgatccaaatgatttggatatatgttttgtgtctgtagcagatgaatatgataacctacctgtcatttacaagtgcaacattcacacaggagaatggttcaagacagaaaaaagttttgatgggcgcccattacaatttatgctcccatggcggcctacaccagttcctacaatttctattcccatgccgaatagaaatattgggatcaatgggagtgaggacgaggttgctgcgctgagggatagagcaacaccaagagtagtgaaaaaggtaaagaagaccaaagatgggaatggtgttgtgaatggagaggagggtatgggttttcaagcttcaaggttaagtggtagaaagcatgacactgatgtggtgaagggtggttcgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

416

Amino Acids

47.94

Weight (kDa)

8.54

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	516, 813
AatII	GACGTC	1 cut(s)	676
AccB1I	GGYRCC	2 cut(s)	663, 984
AccII	CGCG	2 cut(s)	444, 767
AciI	CCGC	5 cut(s)	264, 267, 444, 767, 1012
AclWI	GGATC	2 cut(s)	857, 1073
AcsI	RAATTY	3 cut(s)	306, 339, 377
AcyI	GRCGYC	2 cut(s)	673, 985
AfaI	GTAC	2 cut(s)	568, 771
AfiI	CCNNNNNNNGG	1 cut(s)	1149
AgsI	TTSAA	6 cut(s)	52, 124, 382, 961, 1190, 1197
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AleI	CACNNNNGTG	1 cut(s)	1226
AluBI	AGCT	4 cut(s)	89, 625, 706, 1193
AluI	AGCT	4 cut(s)	89, 625, 706, 1193
Alw21I	GWGCWC	1 cut(s)	708
AlwI	GGATC	2 cut(s)	857, 1073
AoxI	GGCC	1 cut(s)	1013
ApeKI	GCWGC	4 cut(s)	114, 218, 622, 1091
ApoI	RAATTY	3 cut(s)	306, 339, 377
AspLEI	GCGC	3 cut(s)	719, 987, 1096
AspS9I	GGNCC	3 cut(s)	162, 542, 823
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	6 cut(s)	287, 536, 593, 706, 856, 1243
AsuII	TTCGAA	2 cut(s)	30, 375
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	162, 542, 823
BaeGI	GKGCMC	1 cut(s)	666
BaeI	ACNNNNGTAYC	2 cut(s)	116, 149
BanI	GGYRCC	2 cut(s)	663, 984
BanII	GRGCYC	2 cut(s)	243, 708
BbsI	GAAGAC	3 cut(s)	261, 385, 1145
Bbv12I	GWGCWC	1 cut(s)	708
BbvCI	CCTCAGC	1 cut(s)	1097
BbvI	GCAGC	4 cut(s)	101, 205, 634, 1078
BccI	CCATC	3 cut(s)	198, 974, 1142
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BclI	TGATCA	2 cut(s)	552, 616
BcnI	CCSGG	1 cut(s)	668
BfaI	CTAG	5 cut(s)	86, 399, 720, 755, 840
BfmI	CTRYAG	2 cut(s)	677, 894
BfoI	RGCGCY	2 cut(s)	720, 988
BisI	GCNGC	7 cut(s)	115, 219, 267, 445, 623, 1013, 1092
BlsI	GCNGC	7 cut(s)	116, 220, 268, 446, 624, 1014, 1093
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	3 cut(s)	162, 542, 823
BmgT120I	GGNCC	3 cut(s)	162, 542, 823
BmiI	GGNNCC	3 cut(s)	543, 665, 986
BmrFI	CCNGG	1 cut(s)	668
BmrI	ACTGGG	1 cut(s)	797
BmtI	GCTAGC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	797
BpiI	GAAGAC	3 cut(s)	261, 385, 1145
Bpu10I	CCTNAGC	1 cut(s)	1097
Bpu14I	TTCGAA	2 cut(s)	30, 375
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	673, 985
BsaJI	CCNNGG	4 cut(s)	158, 243, 667, 1007
Bsc4I	CCNNNNNNNGG	1 cut(s)	1149
Bse1I	ACTGG	5 cut(s)	177, 792, 806, 825, 1022
BseDI	CCNNGG	4 cut(s)	158, 243, 667, 1007
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	1149
BseMII	CTCAG	1 cut(s)	1088
BseNI	ACTGG	5 cut(s)	177, 792, 806, 825, 1022
BseRI	GAGGAG	1 cut(s)	1187
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	4 cut(s)	101, 205, 634, 1078
BsgI	GTGCAG	2 cut(s)	100, 707
Bsh1236I	CGCG	2 cut(s)	444, 767
BshFI	GGCC	1 cut(s)	1015
BshNI	GGYRCC	2 cut(s)	663, 984
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	3 cut(s)	454, 555, 684
BslI	CCNNNNNNNGG	1 cut(s)	1149
BsmFI	GGGAC	3 cut(s)	454, 555, 684
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	1015
Bsp119I	TTCGAA	2 cut(s)	30, 375
Bsp1286I	GDGCHC	3 cut(s)	243, 666, 708
Bsp143I	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
Bsp19I	CCATGG	1 cut(s)	1007
BspACI	CCGC	5 cut(s)	264, 267, 444, 767, 1012
BspANI	GGCC	1 cut(s)	1015
BspCNI	CTCAG	1 cut(s)	1089
BspFNI	CGCG	2 cut(s)	444, 767
BspLI	GGNNCC	3 cut(s)	543, 665, 986
BspMAI	CTGCAG	1 cut(s)	681
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	857, 1073
BspT104I	TTCGAA	2 cut(s)	30, 375
BspT107I	GGYRCC	2 cut(s)	663, 984
BsrI	ACTGG	5 cut(s)	177, 792, 806, 825, 1022
BssECI	CCNNGG	4 cut(s)	158, 243, 667, 1007
BssMI	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
BssNI	GRCGYC	2 cut(s)	673, 985
BssT1I	CCWWGG	3 cut(s)	158, 243, 1007
Bst4CI	ACNGT	4 cut(s)	129, 275, 546, 694
BstACI	GRCGYC	2 cut(s)	673, 985
BstAPI	GCANNNNNTGC	1 cut(s)	685
BstBI	TTCGAA	2 cut(s)	30, 375
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	1097
BstDSI	CCRYGG	1 cut(s)	1007
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	444, 767
BstH2I	RGCGCY	2 cut(s)	720, 988
BstHHI	GCGC	3 cut(s)	719, 987, 1096
BstKTI	GATC	7 cut(s)	192, 529, 555, 619, 631, 865, 1068
BstMBI	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
BstMWI	GCNNNNNNNGC	2 cut(s)	685, 1009
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	677, 894
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	2 cut(s)	444, 767
BstV1I	GCAGC	4 cut(s)	101, 205, 634, 1078
BstV2I	GAAGAC	3 cut(s)	261, 385, 1145
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	1015
BtgI	CCRYGG	1 cut(s)	1007
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	217, 799, 1221
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	3 cut(s)	719, 987, 1096
Cfr13I	GGNCC	3 cut(s)	162, 542, 823
Csp6I	GTAC	2 cut(s)	567, 770
CviAII	CATG	9 cut(s)	93, 166, 311, 435, 521, 602, 1008, 1045, 1217
CviQI	GTAC	2 cut(s)	567, 770
DdeI	CTNAG	1 cut(s)	1097
DinI	GGCGCC	1 cut(s)	986
DpnI	GATC	7 cut(s)	191, 528, 554, 618, 630, 864, 1067
DpnII	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
Ecl136II	GAGCTC	1 cut(s)	706
Eco130I	CCWWGG	3 cut(s)	158, 243, 1007
Eco24I	GRGCYC	2 cut(s)	243, 708
Eco47I	GGWCC	3 cut(s)	162, 542, 823
Eco53kI	GAGCTC	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	706
EcoRI	GAATTC	2 cut(s)	339, 377
EcoT14I	CCWWGG	3 cut(s)	158, 243, 1007
EcoT38I	GRGCYC	2 cut(s)	243, 708
EgeI	GGCGCC	1 cut(s)	986
EheI	GGCGCC	1 cut(s)	986
ErhI	CCWWGG	3 cut(s)	158, 243, 1007
FaeI	CATG	9 cut(s)	96, 169, 314, 438, 524, 605, 1011, 1048, 1220
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FaqI	GGGAC	3 cut(s)	454, 555, 684
FatI	CATG	9 cut(s)	92, 165, 310, 434, 520, 601, 1007, 1044, 1216
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	2 cut(s)	552, 616
Fnu4HI	GCNGC	7 cut(s)	115, 219, 267, 445, 623, 1013, 1092
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	243, 708
Fsp4HI	GCNGC	7 cut(s)	115, 219, 267, 445, 623, 1013, 1092
FspBI	CTAG	5 cut(s)	86, 399, 720, 755, 840
GlaI	GCGC	3 cut(s)	718, 986, 1095
GluI	GCNGC	7 cut(s)	115, 219, 267, 445, 623, 1013, 1092
HaeII	RGCGCY	2 cut(s)	720, 988
HaeIII	GGCC	1 cut(s)	1015
HapII	CCGG	1 cut(s)	667
HhaI	GCGC	3 cut(s)	719, 987, 1096
Hin1I	GRCGYC	2 cut(s)	673, 985
Hin1II	CATG	9 cut(s)	96, 169, 314, 438, 524, 605, 1011, 1048, 1220
Hin6I	GCGC	3 cut(s)	717, 985, 1094
HinP1I	GCGC	3 cut(s)	717, 985, 1094
HindIII	AAGCTT	1 cut(s)	1191
HinfI	GANTC	5 cut(s)	45, 228, 385, 422, 796
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	6 cut(s)	287, 536, 593, 706, 856, 1243
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	2 cut(s)	189, 795
Hpy188III	TCNNGA	3 cut(s)	58, 382, 961
Hpy8I	GTNNAC	1 cut(s)	440
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	665, 1228
HpyCH4III	ACNGT	4 cut(s)	129, 275, 546, 694
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	8 cut(s)	117, 139, 153, 169, 327, 679, 688, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	685, 1009
HpyF3I	CTNAG	1 cut(s)	1097
HpySE526I	ACGT	1 cut(s)	673
Hsp92I	GRCGYC	2 cut(s)	673, 985
Hsp92II	CATG	9 cut(s)	96, 169, 314, 438, 524, 605, 1011, 1048, 1220
HspAI	GCGC	3 cut(s)	717, 985, 1094
KasI	GGCGCC	1 cut(s)	984
Ksp22I	TGATCA	2 cut(s)	552, 616
Kzo9I	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
LmnI	GCTCC	2 cut(s)	711, 1008
Lsp1109I	GCAGC	4 cut(s)	101, 205, 634, 1078
MaeI	CTAG	5 cut(s)	86, 399, 720, 755, 840
MaeII	ACGT	1 cut(s)	673
MalI	GATC	7 cut(s)	191, 528, 554, 618, 630, 864, 1067
MboI	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
MhlI	GDGCHC	3 cut(s)	243, 666, 708
MluCI	AATT	8 cut(s)	74, 306, 339, 377, 473, 596, 995, 1032
Mly113I	GGCGCC	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	9 cut(s)	195, 208, 357, 840, 1072, 1078, 1092, 1165, 1168
MseI	TTAA	3 cut(s)	303, 609, 1202
MslI	CAYNNNNRTG	1 cut(s)	1226
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	501
MvnI	CGCG	2 cut(s)	444, 767
MwoI	GCNNNNNNNGC	2 cut(s)	685, 1009
NarI	GGCGCC	1 cut(s)	985
NciI	CCSGG	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	1007
NdeII	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	9 cut(s)	96, 169, 314, 438, 524, 605, 1011, 1048, 1220
NlaIV	GGNNCC	3 cut(s)	543, 665, 986
NmeAIII	GCCGAG	1 cut(s)	340
NspV	TTCGAA	2 cut(s)	30, 375
OliI	CACNNNNGTG	1 cut(s)	1226
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	5 cut(s)	45, 228, 385, 422, 796
PkrI	GCNGC	7 cut(s)	116, 220, 268, 446, 624, 1014, 1093
PluTI	GGCGCC	1 cut(s)	988
PsiI	TTATAA	2 cut(s)	516, 813
Psp124BI	GAGCTC	1 cut(s)	708
PspN4I	GGNNCC	3 cut(s)	543, 665, 986
PspPI	GGNCC	3 cut(s)	162, 542, 823
PstI	CTGCAG	1 cut(s)	681
RsaI	GTAC	2 cut(s)	568, 771
RsaNI	GTAC	2 cut(s)	567, 770
RseI	CAYNNNNRTG	1 cut(s)	1226
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	303, 609, 1202
SatI	GCNGC	7 cut(s)	115, 219, 267, 445, 623, 1013, 1092
Sau3AI	GATC	7 cut(s)	189, 526, 552, 616, 628, 862, 1065
Sau96I	GGNCC	3 cut(s)	162, 542, 823
ScaI	AGTACT	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	3 cut(s)	243, 666, 708
SfcI	CTRYAG	2 cut(s)	677, 894
SfoI	GGCGCC	1 cut(s)	986
SfuI	TTCGAA	2 cut(s)	30, 375
SinI	GGWCC	3 cut(s)	162, 542, 823
SmiMI	CAYNNNNRTG	1 cut(s)	1226
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	74, 306, 339, 377, 473, 596, 995, 1032
SsiI	CCGC	5 cut(s)	264, 267, 444, 767, 1012
SspDI	GGCGCC	1 cut(s)	984
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	5 cut(s)	86, 399, 720, 755, 840
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	3 cut(s)	158, 243, 1007
TaaI	ACNGT	4 cut(s)	129, 275, 546, 694
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	3 cut(s)	30, 375, 1244
TasI	AATT	8 cut(s)	74, 306, 339, 377, 473, 596, 995, 1032
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	3 cut(s)	269, 447, 1015
TfiI	GAWTC	5 cut(s)	45, 228, 385, 422, 796
Tru1I	TTAA	3 cut(s)	303, 609, 1202
Tru9I	TTAA	3 cut(s)	303, 609, 1202
TscAI	CASTG	3 cut(s)	217, 806, 1228
TseI	GCWGC	4 cut(s)	114, 218, 622, 1091
TspDTI	ATGAA	9 cut(s)	21, 83, 167, 220, 299, 590, 623, 633, 918
TspRI	CASTG	3 cut(s)	217, 806, 1228
VpaK11BI	GGWCC	3 cut(s)	162, 542, 823
XapI	RAATTY	3 cut(s)	306, 339, 377
XspI	CTAG	5 cut(s)	86, 399, 720, 755, 840
ZraI	GACGTC	1 cut(s)	674
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.