Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001837

Physical Location & Seq

Genomic Coordinates Forward (+)

36395152 .. 36395736

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43682.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCAACTTGTTAATCTTCCTTGGATCCATCAATGCGGTTTGGATCCTGCTATTGGATTCATCTGTGAGCCATACTATAAGGAAGAAGATGACAACCACGCCGACAATAGTACTGATCAAAAAGGAGGAGAAAGAAGGAAGGTAATTAAAATCGATGCGGAGTATAAGTGCAAGGTTGTGAGAATTCTTTCTCCTGAAGACGAGGAAAAGCTTTGTTTCGAATTCAAGATTCAGGTCTTCTCTAGTGAGATTGGTGAGTGGAGAGAATCACTAGTATCATGTCCACGCGGCTTTCTTTATTCCAAACTTGCTTCTACTTCAGGCTATGCTAGCAATGGAATGCTATATTGGAATGCTAACGATGGTGATCTGCTCAGGCTGGGACCTTTGATGATCAACAATAAGAGCACTCCCACTTGTTCTAGTAGTACTACTGCTAATGGTGATTCGGGATATCAATTCAATGTTATTAAGCTTGTTGATCGGCAGGAACATGGAGATGAAGATGAAGATTTACCTTCTTCATTATATTACCTCCAGGCGTTCCCATGGTGGCCTACACCAGTTCCAATTTTAAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L4

Protein Analysis

195

Amino Acids

22.03

Weight (kDa)

4.69

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001837)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02011 FvH4_3g43682 FvH4_3g43730 FvH4_3g43732 FvH4_3g43751 FvH4_3g43770 FvH4_3g44582 FvH4_4g35052
malus_domestica	MD04G1181000.v1.1
pyrus_communis	pycom02g00740
rosa_chinensis	RchiOBHm_Chr2g0089331
rosa_laevigata	RLG00000005816 RLG00000016017 RLG00000016028 RLG00000016029 RLG00000037001
rosa_multiflora	Rmu_sc0000197.1_g000009 Rmu_sc0000197.1_g000011 Rmu_sc0002008.1_g000009 Rmu_sc0004031.1_g000020 Rmu_sc0008322.1_g000011 Rmu_sc0008322.1_g000014 Rmu_sc0017035.1_g000003 Rmu_sc0020026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001150 Rroxscaffold_2G00151930 Rroxscaffold_2G00152070 Rroxscaffold_3G00244680
rosa_rugosa	Rorug01G0488800 Rorug01G0489200 Rorug01G0489300 Rorug02G0000900 Rorug02G0000900 Rorug04G0354300 Rorug05G0483000
rosa_samantha	Rh2AG046000 Rh2BG044600 Rh2CG046400 Rh2DG044300 Rh2DG044400 Rh2DG044600 Rh2DG045000 Rh2DG045900 Rh2DG046000 Rh5AG531200 Rh5DG568500
rosa_wichuraiana	Rw2G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	3 cut(s)	36, 158, 288
AclWI	GGATC	4 cut(s)	19, 32, 38, 51
AcsI	RAATTY	2 cut(s)	183, 221
AcuI	CTGAAG	2 cut(s)	216, 303
AfaI	GTAC	2 cut(s)	112, 430
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	226, 463
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	537
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	2 cut(s)	211, 475
AluI	AGCT	2 cut(s)	211, 475
Alw21I	GWGCWC	1 cut(s)	410
AlwI	GGATC	4 cut(s)	19, 32, 38, 51
AoxI	GGCC	1 cut(s)	554
ApoI	RAATTY	2 cut(s)	183, 221
Asp700I	GAANNNNTTC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	3 cut(s)	266, 377, 455
AsuII	TTCGAA	1 cut(s)	219
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	383
BamHI	GGATCC	2 cut(s)	24, 43
BbsI	GAAGAC	2 cut(s)	204, 229
Bbv12I	GWGCWC	1 cut(s)	410
BccI	CCATC	2 cut(s)	36, 356
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	2 cut(s)	115, 393
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	4 cut(s)	243, 272, 330, 423
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
BmcAI	AGTACT	2 cut(s)	112, 430
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	3 cut(s)	26, 45, 384
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	145
BmtI	GCTAGC	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	204, 229
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	20, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	539
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	20, 548
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	556
BshVI	ATCGAT	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	2 cut(s)	345, 358
BsnI	GGCC	1 cut(s)	556
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
Bsp19I	CCATGG	1 cut(s)	548
BspACI	CCGC	3 cut(s)	36, 158, 288
BspANI	GGCC	1 cut(s)	556
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	26, 45, 384
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	4 cut(s)	19, 32, 38, 51
BspT104I	TTCGAA	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	20, 548
BssMI	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
BssT1I	CCWWGG	2 cut(s)	20, 548
Bst2UI	CCWGG	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	548
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	6 cut(s)	27, 46, 118, 370, 396, 484
BstMBI	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	288
BstV2I	GAAGAC	2 cut(s)	204, 229
BstX2I	RGATCY	2 cut(s)	24, 43
BstYI	RGATCY	2 cut(s)	24, 43
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	556
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	111, 429
CviAII	CATG	3 cut(s)	279, 494, 549
CviJI	RGCY	7 cut(s)	70, 211, 291, 324, 379, 475, 556
CviKI_1	RGCY	7 cut(s)	70, 211, 291, 324, 379, 475, 556
CviQI	GTAC	2 cut(s)	111, 429
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	6 cut(s)	26, 45, 117, 369, 395, 483
DpnII	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
DraI	TTTAAA	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	20, 548
Eco32I	GATATC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	216, 303
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRI	GAATTC	2 cut(s)	183, 221
EcoRII	CCWGG	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	455
EcoT14I	CCWWGG	2 cut(s)	20, 548
ErhI	CCWWGG	2 cut(s)	20, 548
FaeI	CATG	3 cut(s)	282, 497, 552
FaiI	YATR	9 cut(s)	73, 78, 165, 280, 327, 346, 495, 529, 550
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	3 cut(s)	278, 493, 548
FbaI	TGATCA	2 cut(s)	115, 393
Fnu4HI	GCNGC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	4 cut(s)	243, 272, 330, 423
GluI	GCNGC	1 cut(s)	289
GsaI	CCCAGC	1 cut(s)	383
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	556
Hin1II	CATG	3 cut(s)	282, 497, 552
HindIII	AAGCTT	2 cut(s)	209, 473
HinfI	GANTC	4 cut(s)	57, 229, 266, 446
HphI	GGTGA	3 cut(s)	266, 377, 455
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188III	TCNNGA	3 cut(s)	194, 226, 450
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	129, 133, 528
HpyCH4V	TGCA	2 cut(s)	4, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	282, 497, 552
Ksp22I	TGATCA	2 cut(s)	115, 393
Kzo9I	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	4 cut(s)	243, 272, 330, 423
MalI	GATC	6 cut(s)	26, 45, 117, 369, 395, 483
MboI	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
MboII	GAAGA	8 cut(s)	8, 95, 98, 209, 229, 513, 515, 521
MflI	RGATCY	2 cut(s)	24, 43
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	5 cut(s)	144, 183, 221, 458, 570
MnlI	CCTC	3 cut(s)	119, 196, 545
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	4 cut(s)	12, 147, 471, 575
MslI	CAYNNNNRTG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	539
Mva1269I	GAATGC	2 cut(s)	345, 358
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	548
NdeII	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	282, 497, 552
NlaIV	GGNNCC	3 cut(s)	26, 45, 384
NspV	TTCGAA	1 cut(s)	219
PctI	GAATGC	2 cut(s)	345, 358
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	4 cut(s)	57, 229, 266, 446
PkrI	GCNGC	1 cut(s)	290
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	3 cut(s)	26, 45, 384
PspPI	GGNCC	1 cut(s)	383
PspPPI	RGGWCCY	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	24, 43
RsaI	GTAC	2 cut(s)	112, 430
RsaNI	GTAC	2 cut(s)	111, 429
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	12, 147, 471, 575
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	6 cut(s)	24, 43, 115, 367, 393, 481
Sau96I	GGNCC	1 cut(s)	383
ScaI	AGTACT	2 cut(s)	112, 430
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	8 cut(s)	144, 177, 213, 237, 388, 477, 520, 537
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	498
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	5 cut(s)	144, 183, 221, 458, 570
SsiI	CCGC	3 cut(s)	36, 158, 288
SspMI	CTAG	4 cut(s)	243, 272, 330, 423
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	20, 548
TaqI	TCGA	2 cut(s)	153, 219
TasI	AATT	5 cut(s)	144, 183, 221, 458, 570
TatI	WGTACW	2 cut(s)	110, 428
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	4 cut(s)	57, 229, 266, 446
Tru1I	TTAA	4 cut(s)	12, 147, 471, 575
Tru9I	TTAA	4 cut(s)	12, 147, 471, 575
TspDTI	ATGAA	4 cut(s)	49, 513, 516, 522
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	183, 221
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	4 cut(s)	243, 272, 330, 423
ZrmI	AGTACT	2 cut(s)	112, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.