RLG00000005816

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001837
Physical Location & Seq
Reverse (-)
2024531 .. 2026472
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005816

Sequence Viewer

Length: 993 bp
ATGGCTACCAATATCGATTATCTCAGCGACATGCTATTAGTTGAAATTCTATGTCGACTGTCATGCGATAAATTTGTTCTCCAAAGCCAGTGTATGTCCAAGCGGTGGCGCACTCTCATCTCCGATTCTTATTTCATTGGCCACTTCTTACTGAAAAAAGAATCACATGTGCTAGCGACATGCAACGATTTGGTTTTGTGTAGTGAAAAGCAAAACGACCGTGATTACTACATCTTCAATCCGCGCACCAGGCCACTGGTTACTCTTCCTCTAACCCCTCGATGCCATCAACGACAACCTTTGGGATTCATCTGTGAGCCTTACTATTACGAAGCCAGTAATGCCGGCCTTAATATTAATGCCGAGTATAGGTGCAAGGTTGTGAGAATACTTTGTCCTAAGACGCGGAACAAGTGTTTGAAATTTAATATTCGGGTCTTCTCTACTGAGAACGGTGAATGGAGAGAGATAGTTGTACCATGTCCGCAAGGCTTCAAGTTTTTCGACATCAGGTTCTGGGCTAGCTTTGGTAACAATGGATTTCTATATTGGGTTGCTCAAGGTAGTTTGCTCGCATTGCGTACGCCACTCGTGATCAACAACAAGATCAGTGGTACTAGTACTAATGGTGGTGATATTGTTGATGATGATGACCCGTATCAATTTCATGACTGCAACTTAGATGAGGAACCCACTTTGCTATGTGTTTGGGAGTTGAAAGAAGAAGAGCTAGATCATGGTGGTGGACGGAACTCAAAAATTGGGTTCGGAACACATGAAAAGTTATTCACTGGGCCGAAAAATGCATACGGAGGATTCAATAACCTGTTCGGAAGCTGGTCGAAGAAGGCTGAAACGTCTTTTGTTGGTTCCGGTTACCAATTAGTGCTACCACGGTGGCCTACACCAGTTCCCAGACTTCCAAAGAGCTCAGTGTTCATCGAGGATGAGTCCGCCTGTACAAGTATGGCCATGGCTTGGGCGTCGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

331

Amino Acids

37.64

Weight (kDa)

6.97

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 35 - 189 3.6e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 105, 978
AccI GTMKAC 1 cut(s) 55
AccII CGCG 2 cut(s) 244, 406
AciI CCGC 5 cut(s) 103, 242, 406, 485, 954
AcoI YGGCCR 2 cut(s) 139, 969
AcsI RAATTY 3 cut(s) 45, 71, 422
AcyI GRCGYC 1 cut(s) 983
AfaI GTAC 5 cut(s) 477, 583, 616, 622, 961
AfiI CCNNNNNNNGG 3 cut(s) 105, 369, 978
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 6 cut(s) 44, 238, 421, 496, 718, 820
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 4 cut(s) 525, 730, 837, 930
AluI AGCT 4 cut(s) 525, 730, 837, 930
Alw21I GWGCWC 1 cut(s) 932
AlwNI CAGNNNCTG 1 cut(s) 516
AoxI GGCC 6 cut(s) 139, 251, 346, 794, 899, 969
ApoI RAATTY 3 cut(s) 45, 71, 422
AseI ATTAAT 1 cut(s) 357
AspLEI GCGC 2 cut(s) 111, 246
AspS9I GGNCC 1 cut(s) 794
AsuHPI GGTGA 2 cut(s) 467, 644
AsuNHI GCTAGC 2 cut(s) 172, 521
BalI TGGCCA 2 cut(s) 141, 971
BanII GRGCYC 1 cut(s) 932
BauI CACGAG 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 430
Bbv12I GWGCWC 1 cut(s) 932
BccI CCATC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 250
BclI TGATCA 1 cut(s) 594
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 4 cut(s) 173, 522, 618, 731
BmcAI AGTACT 1 cut(s) 622
Bme1390I CCNGG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 2 cut(s) 690, 871
BmrFI CCNGG 1 cut(s) 250
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 1 cut(s) 272
BmtI GCTAGC 2 cut(s) 176, 525
BmuI ACTGGG 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 430
BpuEI CTTGAG 1 cut(s) 543
Bsa29I ATCGAT 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 983
BsaJI CCNNGG 2 cut(s) 893, 972
BsaWI WCCGGW 1 cut(s) 872
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 369, 978
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 5 cut(s) 88, 261, 336, 796, 908
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 250
BseCI ATCGAT 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 893, 972
BseGI GGATG 1 cut(s) 952
BseLI CCNNNNNNNGG 3 cut(s) 105, 369, 978
BseMI GCAATG 1 cut(s) 575
BseMII CTCAG 3 cut(s) 37, 438, 945
BseNI ACTGG 5 cut(s) 88, 261, 336, 796, 908
Bsh1236I CGCG 2 cut(s) 244, 406
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 6 cut(s) 141, 253, 348, 796, 901, 971
BshVI ATCGAT 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 932
BsiSI CCGG 2 cut(s) 345, 873
BsiWI CGTACG 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 105, 369, 978
BsnI GGCC 6 cut(s) 141, 253, 348, 796, 901, 971
Bsp1286I GDGCHC 1 cut(s) 932
Bsp1407I TGTACA 1 cut(s) 959
Bsp143I GATC 3 cut(s) 594, 606, 733
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 5 cut(s) 103, 242, 406, 485, 954
BspANI GGCC 6 cut(s) 141, 253, 348, 796, 901, 971
BspCNI CTCAG 3 cut(s) 36, 439, 944
BspDI ATCGAT 1 cut(s) 15
BspFNI CGCG 2 cut(s) 244, 406
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 690, 871
BspOI GCTAGC 2 cut(s) 176, 525
BspQI GCTCTTC 1 cut(s) 720
BsrDI GCAATG 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 959
BsrI ACTGG 5 cut(s) 88, 261, 336, 796, 908
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 893, 972
BssMI GATC 3 cut(s) 594, 606, 733
BssNI GRCGYC 1 cut(s) 983
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 1 cut(s) 972
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 4 cut(s) 60, 221, 455, 897
Bst6I CTCTTC 2 cut(s) 270, 720
BstACI GRCGYC 1 cut(s) 983
BstAUI TGTACA 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 174, 346, 523, 573
BstDEI CTNAG 5 cut(s) 23, 399, 447, 679, 931
BstDSI CCRYGG 2 cut(s) 893, 972
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 1 cut(s) 952
BstFNI CGCG 2 cut(s) 244, 406
BstHHI GCGC 2 cut(s) 111, 246
BstKTI GATC 3 cut(s) 597, 609, 736
BstMBI GATC 3 cut(s) 594, 606, 733
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 250, 341, 577
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 3 cut(s) 34, 170, 183
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 1 cut(s) 248
BstUI CGCG 2 cut(s) 244, 406
BstV2I GAAGAC 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 6 cut(s) 141, 253, 348, 796, 901, 971
BsuTUI ATCGAT 1 cut(s) 15
BtgI CCRYGG 2 cut(s) 893, 972
BtsCI GGATG 1 cut(s) 952
BtsIMutI CAGTG 5 cut(s) 95, 254, 616, 789, 939
Cac8I GCNNGC 4 cut(s) 174, 346, 523, 573
CaiI CAGNNNCTG 1 cut(s) 516
CciI TCATGA 1 cut(s) 667
CfoI GCGC 2 cut(s) 111, 246
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 794
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 2 cut(s) 412, 972
Csp6I GTAC 5 cut(s) 476, 582, 615, 621, 960
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 9 cut(s) 31, 63, 167, 180, 480, 668, 737, 776, 973
CviQI GTAC 5 cut(s) 476, 582, 615, 621, 960
DdeI CTNAG 5 cut(s) 23, 399, 447, 679, 931
DpnI GATC 3 cut(s) 596, 608, 735
DpnII GATC 3 cut(s) 594, 606, 733
EaeI YGGCCR 2 cut(s) 139, 969
Eam1104I CTCTTC 2 cut(s) 270, 720
EarI CTCTTC 2 cut(s) 270, 720
EciI GGCGGA 1 cut(s) 943
Ecl136II GAGCTC 1 cut(s) 930
Eco130I CCWWGG 1 cut(s) 972
Eco24I GRGCYC 1 cut(s) 932
Eco53kI GAGCTC 1 cut(s) 930
Eco91I GGTNACC 1 cut(s) 875
EcoICRI GAGCTC 1 cut(s) 930
EcoO65I GGTNACC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 972
EcoT22I ATGCAT 1 cut(s) 808
EcoT38I GRGCYC 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 972
FaeI CATG 9 cut(s) 34, 66, 170, 183, 483, 671, 740, 779, 976
FatI CATG 9 cut(s) 30, 62, 166, 179, 479, 667, 736, 775, 972
FbaI TGATCA 1 cut(s) 594
FblI GTMKAC 1 cut(s) 55
FokI GGATG 1 cut(s) 959
FriOI GRGCYC 1 cut(s) 932
FspBI CTAG 4 cut(s) 173, 522, 618, 731
GlaI GCGC 2 cut(s) 110, 245
HaeIII GGCC 6 cut(s) 141, 253, 348, 796, 901, 971
HapII CCGG 2 cut(s) 345, 873
HgaI GACGC 2 cut(s) 412, 972
HhaI GCGC 2 cut(s) 111, 246
Hin1I GRCGYC 1 cut(s) 983
Hin1II CATG 9 cut(s) 34, 66, 170, 183, 483, 671, 740, 779, 976
Hin6I GCGC 2 cut(s) 109, 244
HinP1I GCGC 2 cut(s) 109, 244
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 5 cut(s) 125, 161, 306, 816, 950
HpaII CCGG 2 cut(s) 345, 873
HphI GGTGA 2 cut(s) 467, 644
Hpy166II GTNNAC 2 cut(s) 56, 746
Hpy188I TCNGA 3 cut(s) 124, 770, 833
Hpy188III TCNNGA 2 cut(s) 592, 668
Hpy8I GTNNAC 2 cut(s) 56, 746
Hpy99I CGWCG 1 cut(s) 988
HpyAV CCTTC 1 cut(s) 841
HpyCH4III ACNGT 4 cut(s) 60, 221, 455, 897
HpyCH4IV ACGT 1 cut(s) 857
HpyCH4V TGCA 4 cut(s) 183, 375, 675, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 341, 577
HpyF3I CTNAG 5 cut(s) 23, 399, 447, 679, 931
HpySE526I ACGT 1 cut(s) 857
Hsp92I GRCGYC 1 cut(s) 983
Hsp92II CATG 9 cut(s) 34, 66, 170, 183, 483, 671, 740, 779, 976
HspAI GCGC 2 cut(s) 109, 244
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 3 cut(s) 594, 606, 733
LguI GCTCTTC 1 cut(s) 720
LweI GCATC 1 cut(s) 272
MaeI CTAG 4 cut(s) 173, 522, 618, 731
MaeII ACGT 1 cut(s) 857
MaeIII GTNAC 3 cut(s) 259, 530, 875
MalI GATC 3 cut(s) 596, 608, 735
MboI GATC 3 cut(s) 594, 606, 733
MboII GAAGA 6 cut(s) 226, 257, 430, 734, 737, 856
MhlI GDGCHC 1 cut(s) 932
MlsI TGGCCA 2 cut(s) 141, 971
MluCI AATT 6 cut(s) 45, 71, 422, 662, 759, 881
MluNI TGGCCA 2 cut(s) 141, 971
MlyI GAGTC 1 cut(s) 959
MnlI CCTC 5 cut(s) 279, 288, 679, 806, 937
Mox20I TGGCCA 2 cut(s) 141, 971
Mph1103I ATGCAT 1 cut(s) 808
MroNI GCCGGC 1 cut(s) 344
MscI TGGCCA 2 cut(s) 141, 971
MseI TTAA 3 cut(s) 351, 357, 426
MslI CAYNNNNRTG 1 cut(s) 741
Msp20I TGGCCA 2 cut(s) 141, 971
MspI CCGG 2 cut(s) 345, 873
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 2 cut(s) 244, 406
MwoI GCNNNNNNNGC 3 cut(s) 250, 341, 577
NaeI GCCGGC 1 cut(s) 346
NcoI CCATGG 1 cut(s) 972
NdeII GATC 3 cut(s) 594, 606, 733
NgoMIV GCCGGC 1 cut(s) 344
NheI GCTAGC 2 cut(s) 172, 521
NlaIII CATG 9 cut(s) 34, 66, 170, 183, 483, 671, 740, 779, 976
NlaIV GGNNCC 2 cut(s) 690, 871
NmeAIII GCCGAG 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 3 cut(s) 34, 170, 183
PagI TCATGA 1 cut(s) 667
PciI ACATGT 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 720
PdiI GCCGGC 1 cut(s) 346
PfeI GAWTC 4 cut(s) 125, 161, 306, 816
Pfl23II CGTACG 1 cut(s) 581
PflMI CCANNNNNTGG 2 cut(s) 105, 978
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
PscI ACATGT 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 1 cut(s) 248
PspLI CGTACG 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 690, 871
PspPI GGNCC 1 cut(s) 794
PstNI CAGNNNCTG 1 cut(s) 516
RsaI GTAC 5 cut(s) 477, 583, 616, 622, 961
RsaNI GTAC 5 cut(s) 476, 582, 615, 621, 960
RseI CAYNNNNRTG 1 cut(s) 741
SacI GAGCTC 1 cut(s) 932
SalI GTCGAC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 3 cut(s) 351, 357, 426
Sau3AI GATC 3 cut(s) 594, 606, 733
Sau96I GGNCC 1 cut(s) 794
ScaI AGTACT 1 cut(s) 622
SchI GAGTC 1 cut(s) 959
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 932
SfaNI GCATC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 558
SmoI CTYRAG 1 cut(s) 558
SpeI ACTAGT 1 cut(s) 617
Sse9I AATT 6 cut(s) 45, 71, 422, 662, 759, 881
SsiI CCGC 5 cut(s) 103, 242, 406, 485, 954
SspI AATATT 2 cut(s) 355, 430
SspMI CTAG 4 cut(s) 173, 522, 618, 731
SstI GAGCTC 1 cut(s) 932
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 4 cut(s) 60, 221, 455, 897
TaiI ACGT 1 cut(s) 860
TaqI TCGA 6 cut(s) 15, 55, 280, 504, 842, 942
TasI AATT 6 cut(s) 45, 71, 422, 662, 759, 881
TatI WGTACW 2 cut(s) 620, 959
TfiI GAWTC 4 cut(s) 125, 161, 306, 816
Tru1I TTAA 3 cut(s) 351, 357, 426
Tru9I TTAA 3 cut(s) 351, 357, 426
TscAI CASTG 5 cut(s) 95, 261, 616, 796, 939
TspDTI ATGAA 5 cut(s) 124, 298, 656, 792, 928
TspGWI ACGGA 2 cut(s) 763, 825
TspRI CASTG 5 cut(s) 95, 261, 616, 796, 939
Van91I CCANNNNNTGG 2 cut(s) 105, 978
VspI ATTAAT 1 cut(s) 357
XapI RAATTY 3 cut(s) 45, 71, 422
XceI RCATGY 3 cut(s) 34, 170, 183
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 4 cut(s) 173, 522, 618, 731
ZrmI AGTACT 1 cut(s) 622
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.