Rorug01G0489300

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000254
Physical Location & Seq
Forward (+)
57446551 .. 57449658
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0489300.1

Sequence Viewer

Length: 1572 bp
ATGGATAATGGAATTGGTACCACCTCCGATGTCGGTCAGAGAAATGAGAGAGAATCAGAAGTTTTGAAAAAAAGAGGAGAAAATAAAAAGAGCCAGGGACACGTTAGCAAGGGCACGTGTCCTGACACCGCTGGTCACAGGTTACTATATAAAAGGTGTTGCTTGCTTGCTTGCTTGCCGGCTACTCGAAAAAATCTCACTGCACATACGTCGATTATCAATCTGGGTGAGAAACTGAGAATGGTATTGGTGACGTCGTCGGAGGCGAAGATCCGGAAGGTGTTGGGATTGGGATACTGGGTGCAGGGCTTCAGGTGCTTCCCATGGTTGGCCGTCAACTTCTTCCTTAAGGACGGACTCCAAGTGGACTCCTCCACTCTCCAGCTCCTCCAGAACTCCGCCAACCTACCCATGGTCGGAAAGCCCCTTTACGGTCTCGTTTCCGACGCCATCTACATTGCTGGCCAGCACCGCATTCCCTATCTCGCCCTTGGCGCGTTCTTACAAGCAGTGTCATGGTTGGCTATAGCAATCCTCTCCCAATCAGGCATCTCAATTAGCGCTATGACCCTATATCTCCTCCTCAGTAATTTGGGCGCTTCAATTGCTGAGGTTGCCAATGATGCCATTGTTGCAGAGGCAGGAAAACAGCCTGCTTCCTCCAAAAGTCCACAACCATCATCCTCGGGCGAGCTTCAGTCTTTTGTTTGGATGTCTTCAGCAGTGGGTGGAATCCTAGGATTTCTCCTAGGTGGTATTGCCATCGACAGATATGGTCCCCAAAAGATGTTCCTGTTCTACGGCTTTCTCCTCGGTGTTCAGTTTTTCATTAGCATTCTTGTCAAGGAGAGCTCTATGAACCTTCCCAAGAGAAGATCTGATGTTGGAATTCGAGAGAAGCTTTCCGAGCTGTCAATTGCATTAAGAAAACCTGAGATTGCTTACTCAATTACATGGTTTGCAGCATCATATGCCATCATTCCATCATTGACAGGCACGATGTTCTTTTACCAGACACAATATTTGAATATTGACTCATCGGTGTTGGGAATCTCAAAGGTGTTTGGCCAGGCGGCAATGCTTCTATGGAGTGTCATCTATAATCGTCACCTGAAACCGGTAACACCGAGGAAACTAATTTCAGCCATTCAGGTTACCATGGCTTTATTTATGATTTCTGATGCGTTGTTTGCAAATGGGTTTTACCGGAATATGGGGCTGTCAGACAATTTTTACATCGTAATATTTTCTGGCCTCTCAGAGGTTCTCTTGTTTATTAAGATTCTGCCCTTCAGCATTCTTGTAGCCAAGCTCTGCCCACCGGGATGCGAGGGATCTCTAATGGCATTTGTAATGTCTGCAATAGCAGTTGCGTTGATTATGAGCGGATATCTAGGTATTGCGCTTGCTTCTTATGTTGGGATCACAGGAAATGATTTTTCAGGGCTTCCGCTTGCCTTCCTAATACAAGCATTTCTCACACTCTTGCCACTCTATTGGTCATCATGTATCCCTATCCTTGAATCGGAACCCGATCATGTAAAAGCAAAACCCAGTAGCAAGAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

523

Amino Acids

56.94

Weight (kDa)

9.3

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 102 - 516 5.4e-113 BT1 family
MFS_1 PF07690 113 - 458 1.5e-11 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 1386
AccII CGCG 1 cut(s) 497
AccIII TCCGGA 1 cut(s) 273
AciI CCGC 6 cut(s) 129, 399, 472, 1073, 1386, 1451
AclWI GGATC 3 cut(s) 265, 1342, 1430
AcoI YGGCCR 3 cut(s) 330, 463, 1066
AcsI RAATTY 1 cut(s) 888
AcuI CTGAAG 4 cut(s) 295, 680, 702, 1276
AcvI CACGTG 1 cut(s) 117
AcyI GRCGYC 2 cut(s) 254, 447
AfaI GTAC 1 cut(s) 19
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 8 cut(s) 328, 412, 416, 431, 1117, 1213, 1261, 1525
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 2 cut(s) 100, 116
AgeI ACCGGT 1 cut(s) 1117
AgsI TTSAA 4 cut(s) 67, 603, 1027, 1523
AjnI CCWGG 2 cut(s) 93, 1068
AluBI AGCT 6 cut(s) 385, 694, 852, 901, 910, 1312
AluI AGCT 6 cut(s) 385, 694, 852, 901, 910, 1312
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 3 cut(s) 265, 1342, 1430
Ama87I CYCGRG 1 cut(s) 685
Aor13HI TCCGGA 1 cut(s) 273
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 4 cut(s) 330, 463, 1066, 1252
ApeKI GCWGC 1 cut(s) 962
ApoI RAATTY 1 cut(s) 888
ArsI GACNNNNNNTTYG 2 cut(s) 1006, 1038
AsiGI ACCGGT 1 cut(s) 1117
Asp718I GGTACC 1 cut(s) 17
AspA2I CCTAGG 2 cut(s) 736, 748
AspLEI GCGC 4 cut(s) 497, 563, 599, 1405
AspS9I GGNCC 1 cut(s) 776
AsuC2I CCSGG 1 cut(s) 1323
AsuHPI GGTGA 3 cut(s) 239, 262, 1100
AvaI CYCGRG 1 cut(s) 685
AvaII GGWCC 1 cut(s) 776
AvrII CCTAGG 2 cut(s) 736, 748
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 2 cut(s) 465, 1068
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 854
BbrPI CACGTG 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 854
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 974
BccI CCATC 5 cut(s) 458, 685, 770, 983, 991
BceAI ACGGC 2 cut(s) 317, 817
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 2 cut(s) 95, 1070
BciVI GTATCC 2 cut(s) 287, 1520
BcnI CCSGG 1 cut(s) 1323
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 3 cut(s) 737, 749, 1394
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 2 cut(s) 564, 600
BfrI CTTAAG 1 cut(s) 347
BfuI GTATCC 2 cut(s) 287, 1520
BglII AGATCT 1 cut(s) 875
BisI GCNGC 2 cut(s) 963, 1074
BlnI CCTAGG 2 cut(s) 736, 748
BlsI GCNGC 2 cut(s) 964, 1075
Bme1390I CCNGG 3 cut(s) 95, 1070, 1323
Bme18I GGWCC 1 cut(s) 776
BmeT110I CYCGRG 1 cut(s) 685
BmgT120I GGNCC 1 cut(s) 776
BmiI GGNNCC 3 cut(s) 19, 778, 1530
BmrFI CCNGG 3 cut(s) 95, 1070, 1323
BmrI ACTGGG 2 cut(s) 307, 1548
BmsI GCATC 5 cut(s) 558, 613, 974, 1171, 1316
BmuI ACTGGG 2 cut(s) 307, 1548
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 2 cut(s) 365, 374
Bpu10I CCTNAGC 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 1323
BsaAI YACGTR 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 254, 447
BsaI GGTCTC 1 cut(s) 440
BsaWI WCCGGW 3 cut(s) 273, 1117, 1206
Bsc4I CCNNNNNNNGG 8 cut(s) 328, 412, 416, 431, 1117, 1213, 1261, 1525
Bse118I RCCGGY 2 cut(s) 178, 1117
Bse1I ACTGG 2 cut(s) 302, 1554
Bse3DI GCAATG 2 cut(s) 456, 1083
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 2 cut(s) 95, 1070
BseGI GGATG 3 cut(s) 680, 717, 1331
BseLI CCNNNNNNNGG 8 cut(s) 328, 412, 416, 431, 1117, 1213, 1261, 1525
BseMI GCAATG 2 cut(s) 456, 1083
BseMII CTCAG 5 cut(s) 227, 598, 600, 924, 1272
BseNI ACTGG 2 cut(s) 302, 1554
BseRI GAGGAG 6 cut(s) 90, 361, 377, 569, 572, 800
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 974
BsgI GTGCAG 2 cut(s) 186, 323
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 4 cut(s) 332, 465, 1068, 1254
BshNI GGYRCC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 685
BsiSI CCGG 5 cut(s) 179, 274, 1118, 1207, 1322
BslFI GGGAC 2 cut(s) 111, 762
BslI CCNNNNNNNGG 8 cut(s) 328, 412, 416, 431, 1117, 1213, 1261, 1525
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 111, 762
BsmI GAATGC 3 cut(s) 474, 834, 1296
BsnI GGCC 4 cut(s) 332, 465, 1068, 1254
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 685
Bsp1286I GDGCHC 2 cut(s) 116, 854
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 5 cut(s) 270, 875, 1334, 1422, 1534
Bsp19I CCATGG 3 cut(s) 323, 411, 1158
BspACI CCGC 6 cut(s) 129, 399, 472, 1073, 1386, 1451
BspANI GGCC 4 cut(s) 332, 465, 1068, 1254
BspCNI CTCAG 5 cut(s) 228, 597, 601, 925, 1271
BspEI TCCGGA 1 cut(s) 273
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 3 cut(s) 19, 778, 1530
BspPI GGATC 3 cut(s) 265, 1342, 1430
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 1386
BsrDI GCAATG 2 cut(s) 456, 1083
BsrFI RCCGGY 2 cut(s) 178, 1117
BsrI ACTGG 2 cut(s) 302, 1554
BssAI RCCGGY 2 cut(s) 178, 1117
BssMI GATC 5 cut(s) 270, 875, 1334, 1422, 1534
BssNI GRCGYC 2 cut(s) 254, 447
BssT1I CCWWGG 6 cut(s) 323, 411, 490, 736, 748, 1158
Bst2UI CCWGG 2 cut(s) 95, 1070
Bst4CI ACNGT 1 cut(s) 434
BstACI GRCGYC 2 cut(s) 254, 447
BstAFI CTTAAG 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 971
BstBAI YACGTR 1 cut(s) 117
BstDEI CTNAG 5 cut(s) 236, 584, 609, 933, 1258
BstDSI CCRYGG 3 cut(s) 323, 411, 1158
BstEII GGTNACC 1 cut(s) 1153
BstENI CCTNNNNNAGG 1 cut(s) 1259
BstF5I GGATG 3 cut(s) 680, 717, 1331
BstFNI CGCG 1 cut(s) 497
BstH2I RGCGCY 2 cut(s) 564, 600
BstHHI GCGC 4 cut(s) 497, 563, 599, 1405
BstKTI GATC 5 cut(s) 273, 878, 1337, 1425, 1537
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 5 cut(s) 270, 875, 1334, 1422, 1534
BstNI CCWGG 2 cut(s) 95, 1070
BstPI GGTNACC 1 cut(s) 1153
BstSCI CCNGG 3 cut(s) 93, 1068, 1321
BstSFI CTRYAG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 974
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 3 cut(s) 270, 875, 1334
BstXI CCANNNNNNTGG 1 cut(s) 1497
BstYI RGATCY 3 cut(s) 270, 875, 1334
BsuI GTATCC 2 cut(s) 287, 1520
BsuRI GGCC 4 cut(s) 332, 465, 1068, 1254
BtgI CCRYGG 3 cut(s) 323, 411, 1158
BtsCI GGATG 3 cut(s) 680, 717, 1331
BtsI GCAGTG 3 cut(s) 198, 516, 729
BtsIMutI CAGTG 3 cut(s) 198, 516, 729
CfoI GCGC 4 cut(s) 497, 563, 599, 1405
Cfr10I RCCGGY 2 cut(s) 178, 1117
Cfr13I GGNCC 1 cut(s) 776
CseI GACGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 1117
CviAII CATG 7 cut(s) 324, 412, 516, 954, 1159, 1506, 1538
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 5 cut(s) 236, 584, 609, 933, 1258
DpnI GATC 5 cut(s) 272, 877, 1336, 1424, 1536
DpnII GATC 5 cut(s) 270, 875, 1334, 1422, 1534
EaeI YGGCCR 3 cut(s) 330, 463, 1066
EciI GGCGGA 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 852
Eco130I CCWWGG 6 cut(s) 323, 411, 490, 736, 748, 1158
Eco24I GRGCYC 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 1391
Eco47I GGWCC 1 cut(s) 776
Eco47III AGCGCT 1 cut(s) 562
Eco53kI GAGCTC 1 cut(s) 852
Eco57I CTGAAG 4 cut(s) 295, 680, 702, 1276
Eco72I CACGTG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 685
Eco91I GGTNACC 1 cut(s) 1153
EcoICRI GAGCTC 1 cut(s) 852
EcoNI CCTNNNNNAGG 1 cut(s) 1259
EcoO65I GGTNACC 1 cut(s) 1153
EcoRI GAATTC 1 cut(s) 888
EcoRII CCWGG 2 cut(s) 93, 1068
EcoRV GATATC 1 cut(s) 1391
EcoT14I CCWWGG 6 cut(s) 323, 411, 490, 736, 748, 1158
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 6 cut(s) 323, 411, 490, 736, 748, 1158
FaeI CATG 7 cut(s) 327, 415, 519, 957, 1162, 1509, 1541
FaqI GGGAC 2 cut(s) 111, 762
FatI CATG 7 cut(s) 323, 411, 515, 953, 1158, 1505, 1537
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 2 cut(s) 963, 1074
FokI GGATG 3 cut(s) 667, 724, 1338
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 2 cut(s) 963, 1074
FspBI CTAG 3 cut(s) 737, 749, 1394
GlaI GCGC 4 cut(s) 496, 562, 598, 1404
GluI GCNGC 2 cut(s) 963, 1074
GsuI CTGGAG 2 cut(s) 365, 374
HaeII RGCGCY 2 cut(s) 564, 600
HaeIII GGCC 4 cut(s) 332, 465, 1068, 1254
HapII CCGG 5 cut(s) 179, 274, 1118, 1207, 1322
HgaI GACGC 1 cut(s) 455
HhaI GCGC 4 cut(s) 497, 563, 599, 1405
Hin1I GRCGYC 2 cut(s) 254, 447
Hin1II CATG 7 cut(s) 327, 415, 519, 957, 1162, 1509, 1541
Hin6I GCGC 4 cut(s) 495, 561, 597, 1403
HinP1I GCGC 4 cut(s) 495, 561, 597, 1403
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 8 cut(s) 53, 357, 368, 732, 1034, 1050, 1282, 1523
HpaII CCGG 5 cut(s) 179, 274, 1118, 1207, 1322
HphI GGTGA 3 cut(s) 239, 262, 1100
Hpy166II GTNNAC 3 cut(s) 337, 367, 671
Hpy188III TCNNGA 4 cut(s) 122, 274, 391, 893
Hpy8I GTNNAC 3 cut(s) 337, 367, 671
Hpy99I CGWCG 4 cut(s) 214, 259, 262, 449
HpyAV CCTTC 5 cut(s) 271, 872, 1300, 1468, 1558
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 4 cut(s) 102, 116, 209, 254
HpyCH4V TGCA 7 cut(s) 203, 304, 635, 920, 962, 1193, 1361
HpyF3I CTNAG 5 cut(s) 236, 584, 609, 933, 1258
HpySE526I ACGT 4 cut(s) 102, 116, 209, 254
Hsp92I GRCGYC 2 cut(s) 254, 447
Hsp92II CATG 7 cut(s) 327, 415, 519, 957, 1162, 1509, 1541
HspAI GCGC 4 cut(s) 495, 561, 597, 1403
Kpn2I TCCGGA 1 cut(s) 273
KpnI GGTACC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Kzo9I GATC 5 cut(s) 270, 875, 1334, 1422, 1534
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 974
LweI GCATC 5 cut(s) 558, 613, 974, 1171, 1316
MaeI CTAG 3 cut(s) 737, 749, 1394
MaeII ACGT 4 cut(s) 102, 116, 209, 254
MaeIII GTNAC 6 cut(s) 134, 141, 250, 1106, 1120, 1153
MalI GATC 5 cut(s) 272, 877, 1336, 1424, 1536
MbiI CCGCTC 1 cut(s) 1386
MboI GATC 5 cut(s) 270, 875, 1334, 1422, 1534
MboII GAAGA 4 cut(s) 280, 334, 708, 885
MfeI CAATTG 2 cut(s) 603, 915
MflI RGATCY 3 cut(s) 270, 875, 1334
MhlI GDGCHC 2 cut(s) 116, 854
MlsI TGGCCA 2 cut(s) 465, 1068
MluCI AATT 9 cut(s) 12, 555, 589, 603, 888, 915, 948, 1137, 1228
MluNI TGGCCA 2 cut(s) 465, 1068
MlyI GAGTC 3 cut(s) 351, 362, 1028
MmeI TCCRAC 4 cut(s) 240, 397, 468, 865
Mox20I TGGCCA 2 cut(s) 465, 1068
MroI TCCGGA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 178
MscI TGGCCA 2 cut(s) 465, 1068
MseI TTAA 3 cut(s) 348, 923, 1278
MslI CAYNNNNRTG 1 cut(s) 1324
Msp20I TGGCCA 2 cut(s) 465, 1068
MspA1I CMGCKG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 5 cut(s) 179, 274, 1118, 1207, 1322
MspR9I CCNGG 3 cut(s) 95, 1070, 1323
MunI CAATTG 2 cut(s) 603, 915
Mva1269I GAATGC 3 cut(s) 474, 834, 1296
MvaI CCWGG 2 cut(s) 95, 1070
MvnI CGCG 1 cut(s) 497
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 1323
NcoI CCATGG 3 cut(s) 323, 411, 1158
NdeI CATATG 1 cut(s) 970
NdeII GATC 5 cut(s) 270, 875, 1334, 1422, 1534
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 7 cut(s) 327, 415, 519, 957, 1162, 1509, 1541
NlaIV GGNNCC 3 cut(s) 19, 778, 1530
NmuCI GTSAC 3 cut(s) 134, 250, 1106
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 3 cut(s) 474, 834, 1296
PdiI GCCGGC 1 cut(s) 180
PfeI GAWTC 5 cut(s) 53, 732, 1050, 1282, 1523
PflFI GACNNNGTC 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 1117
PkrI GCNGC 2 cut(s) 964, 1075
PleI GAGTC 3 cut(s) 351, 362, 1028
PmaCI CACGTG 1 cut(s) 117
PmlI CACGTG 1 cut(s) 117
PpsI GAGTC 3 cut(s) 351, 362, 1028
Ppu21I YACGTR 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 854
Psp6I CCWGG 2 cut(s) 93, 1068
PspCI CACGTG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 1153
PspGI CCWGG 2 cut(s) 93, 1068
PspN4I GGNNCC 3 cut(s) 19, 778, 1530
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 3 cut(s) 270, 875, 1334
PsyI GACNNNGTC 1 cut(s) 256
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 1324
SacI GAGCTC 1 cut(s) 854
SaqAI TTAA 3 cut(s) 348, 923, 1278
SatI GCNGC 2 cut(s) 963, 1074
Sau3AI GATC 5 cut(s) 270, 875, 1334, 1422, 1534
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 3 cut(s) 351, 362, 1028
ScrFI CCNGG 3 cut(s) 95, 1070, 1323
SduI GDGCHC 2 cut(s) 116, 854
SfaNI GCATC 5 cut(s) 558, 613, 974, 1171, 1316
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 1324
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 9 cut(s) 12, 555, 589, 603, 888, 915, 948, 1137, 1228
SsiI CCGC 6 cut(s) 129, 399, 472, 1073, 1386, 1451
SspI AATATT 3 cut(s) 1022, 1030, 1245
SspMI CTAG 3 cut(s) 737, 749, 1394
SstI GAGCTC 1 cut(s) 854
StyD4I CCNGG 3 cut(s) 93, 1068, 1321
StyI CCWWGG 6 cut(s) 323, 411, 490, 736, 748, 1158
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 4 cut(s) 105, 119, 212, 257
TaqI TCGA 4 cut(s) 187, 212, 765, 892
TaqII GACCGA 1 cut(s) 23
TasI AATT 9 cut(s) 12, 555, 589, 603, 888, 915, 948, 1137, 1228
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 5 cut(s) 53, 732, 1050, 1282, 1523
Tru1I TTAA 3 cut(s) 348, 923, 1278
Tru9I TTAA 3 cut(s) 348, 923, 1278
TscAI CASTG 3 cut(s) 205, 516, 729
TseFI GTSAC 3 cut(s) 134, 250, 1106
TseI GCWGC 1 cut(s) 962
Tsp45I GTSAC 3 cut(s) 134, 250, 1106
TspDTI ATGAA 2 cut(s) 817, 872
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 3 cut(s) 205, 516, 729
Tth111I GACNNNGTC 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 776
XagI CCTNNNNNAGG 1 cut(s) 1259
XapI RAATTY 1 cut(s) 888
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmaJI CCTAGG 2 cut(s) 736, 748
XspI CTAG 3 cut(s) 737, 749, 1394
ZraI GACGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.