Rmu_sc0004161.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004161.1
OG0000254
Physical Location & Seq
Reverse (-)
33839 .. 34150
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004161.1_g000008.1.cds

Sequence Viewer

Length: 312 bp
ctgcacatccccaagctagaaattgaatctgattctactgttcttgttcagcttgtgcagcagcaaaacctttctactcacccctttggatctctgcttgctggatgcaacaactttatggccactatgcagaatgtccagcttatgcacatctttcgtgagtgtaatatgacagcggatgctttggctagatgcagcattgatcatgaacctggtctcatcacttttttggatcctcctatccatgctactgaagcctttcttgatgatcttgcttttgtaactagaactaggagaacggtctcctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

103

Amino Acids

11.5

Weight (kDa)

5.32

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AclWI GGATC 3 cut(s) 97, 227, 240
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 273
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 16, 52, 142
AluI AGCT 3 cut(s) 16, 52, 142
Alw26I GTCTC 2 cut(s) 221, 307
AlwI GGATC 3 cut(s) 97, 227, 240
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 58, 61, 195
Asp700I GAANNNNTTC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 71
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 1 cut(s) 232
BbvI GCAGC 3 cut(s) 70, 73, 207
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 221, 307
BfaI CTAG 4 cut(s) 17, 189, 285, 291
BisI GCNGC 3 cut(s) 59, 62, 196
BlsI GCNGC 3 cut(s) 60, 63, 197
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 3 cut(s) 95, 169, 182
BsaI GGTCTC 2 cut(s) 221, 307
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 3 cut(s) 6, 110, 184
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 70, 73, 207
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 221, 307
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 2 cut(s) 221, 307
Bsp143I GATC 4 cut(s) 89, 202, 232, 268
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 122
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 3 cut(s) 97, 227, 240
BspTNI GGTCTC 2 cut(s) 221, 307
BssMI GATC 4 cut(s) 89, 202, 232, 268
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 40, 301
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 3 cut(s) 6, 110, 184
BstKTI GATC 4 cut(s) 92, 205, 235, 271
BstMAI GTCTC 2 cut(s) 221, 307
BstMBI GATC 4 cut(s) 89, 202, 232, 268
BstMWI GCNNNNNNNGC 2 cut(s) 58, 254
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstV1I GCAGC 3 cut(s) 70, 73, 207
BstX2I RGATCY 2 cut(s) 89, 232
BstYI RGATCY 2 cut(s) 89, 232
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 3 cut(s) 6, 110, 184
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 205
CsiI ACCWGGT 1 cut(s) 211
CviAII CATG 2 cut(s) 206, 245
CviJI RGCY 6 cut(s) 16, 52, 122, 142, 188, 257
CviKI_1 RGCY 6 cut(s) 16, 52, 122, 142, 188, 257
DdeI CTNAG 1 cut(s) 309
DpnI GATC 4 cut(s) 91, 204, 234, 270
DpnII GATC 4 cut(s) 89, 202, 232, 268
EaeI YGGCCR 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 221, 307
Eco57I CTGAAG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 209, 248
FaiI YATR 6 cut(s) 119, 128, 146, 170, 207, 246
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 2 cut(s) 205, 244
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 59, 62, 196
FokI GGATG 2 cut(s) 117, 191
Fsp4HI GCNGC 3 cut(s) 59, 62, 196
FspBI CTAG 4 cut(s) 17, 189, 285, 291
GluI GCNGC 3 cut(s) 59, 62, 196
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 2 cut(s) 209, 248
HinfI GANTC 2 cut(s) 26, 32
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 158, 206, 263
HpyCH4III ACNGT 2 cut(s) 40, 301
HpyCH4V TGCA 6 cut(s) 4, 58, 108, 130, 148, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 254
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 2 cut(s) 209, 248
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 89, 202, 232, 268
LpnPI CCDG 4 cut(s) 87, 152, 198, 225
Lsp1109I GCAGC 3 cut(s) 70, 73, 207
LweI GCATC 3 cut(s) 95, 169, 182
MabI ACCWGGT 1 cut(s) 211
MaeI CTAG 4 cut(s) 17, 189, 285, 291
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 91, 204, 234, 270
MboI GATC 4 cut(s) 89, 202, 232, 268
MflI RGATCY 2 cut(s) 89, 232
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 122
MnlI CCTC 1 cut(s) 246
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 122
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 58, 254
NdeII GATC 4 cut(s) 89, 202, 232, 268
NlaIII CATG 2 cut(s) 209, 248
NlaIV GGNNCC 1 cut(s) 234
PagI TCATGA 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 26, 32
PkrI GCNGC 3 cut(s) 60, 63, 197
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 2 cut(s) 89, 232
SatI GCNGC 3 cut(s) 59, 62, 196
Sau3AI GATC 4 cut(s) 89, 202, 232, 268
ScrFI CCNGG 1 cut(s) 213
SetI ASST 5 cut(s) 18, 54, 72, 144, 214
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 3 cut(s) 95, 169, 182
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 176
SspMI CTAG 4 cut(s) 17, 189, 285, 291
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 40, 301
TasI AATT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 26, 32
TseI GCWGC 3 cut(s) 58, 61, 195
TspDTI ATGAA 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 4 cut(s) 17, 189, 285, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.