RchiOBHm_Chr3g0492911

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000254
Physical Location & Seq
Reverse (-)
39936737 .. 39937112
376 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45577

Sequence Viewer

Length: 267 bp
ATGCTAATGCCTGATCTCTCCCTCCATCCTCTGGGATCCTTACTCAATGGATGTAAGCTGCTTATGTCTAATTTGAACAATGCTCAGCTCACCCATGTGTTCCAGGAATGCAACATGCTTGCTGATGCATTAGCAAAGAATAGCATCAATCATGATCTGGGCATCATCACTTTTGAAAGTCCCCCTATCCATGCTGCTCAGGCATACTTAGAAGATATTGCTGCTGTGTCTAGAGTCAGAAGATCTGGCATGTGCTATCACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

88

Amino Acids

9.66

Weight (kDa)

6.14

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AclWI GGATC 2 cut(s) 30, 43
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 76, 176
AjnI CCWGG 1 cut(s) 102
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 2 cut(s) 58, 88
AluI AGCT 2 cut(s) 58, 88
AlwI GGATC 2 cut(s) 30, 43
ApeKI GCWGC 3 cut(s) 58, 194, 221
AsuHPI GGTGA 1 cut(s) 82
BamHI GGATCC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 45, 181, 208
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 104
BfaI CTAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 242
BisI GCNGC 3 cut(s) 59, 195, 222
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 3 cut(s) 60, 196, 223
Bme1390I CCNGG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 3 cut(s) 115, 153, 171
Bpu10I CCTNAGC 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 25, 56
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 98, 212
BseXI GCAGC 3 cut(s) 45, 181, 208
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 113
Bsp143I GATC 4 cut(s) 13, 35, 154, 242
Bsp1720I GCTNAGC 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 97, 211
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 2 cut(s) 30, 43
BssMI GATC 4 cut(s) 13, 35, 154, 242
Bst2UI CCWGG 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 4 cut(s) 84, 198, 208, 264
BstF5I GGATG 2 cut(s) 25, 56
BstKTI GATC 4 cut(s) 16, 38, 157, 245
BstMBI GATC 4 cut(s) 13, 35, 154, 242
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 2 cut(s) 118, 253
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 45, 181, 208
BstX2I RGATCY 2 cut(s) 35, 242
BstYI RGATCY 2 cut(s) 35, 242
BtsCI GGATG 2 cut(s) 25, 56
Cac8I GCNNGC 1 cut(s) 120
CciI TCATGA 1 cut(s) 151
CviAII CATG 5 cut(s) 95, 115, 152, 191, 250
CviJI RGCY 2 cut(s) 58, 88
CviKI_1 RGCY 2 cut(s) 58, 88
DdeI CTNAG 4 cut(s) 84, 198, 208, 264
DpnI GATC 4 cut(s) 15, 37, 156, 244
DpnII GATC 4 cut(s) 13, 35, 154, 242
EcoRII CCWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 130
FaeI CATG 5 cut(s) 98, 118, 155, 194, 253
FaiI YATR 7 cut(s) 65, 96, 116, 153, 192, 205, 251
FaqI GGGAC 1 cut(s) 165
FatI CATG 5 cut(s) 94, 114, 151, 190, 249
Fnu4HI GCNGC 3 cut(s) 59, 195, 222
FokI GGATG 2 cut(s) 12, 63
Fsp4HI GCNGC 3 cut(s) 59, 195, 222
FspBI CTAG 1 cut(s) 231
GluI GCNGC 3 cut(s) 59, 195, 222
Hin1II CATG 5 cut(s) 98, 118, 155, 194, 253
HinfI GANTC 1 cut(s) 234
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 2 cut(s) 152, 231
HpyCH4V TGCA 2 cut(s) 111, 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 4 cut(s) 84, 198, 208, 264
Hsp92II CATG 5 cut(s) 98, 118, 155, 194, 253
Kzo9I GATC 4 cut(s) 13, 35, 154, 242
LpnPI CCDG 7 cut(s) 17, 24, 89, 116, 143, 185, 231
Lsp1109I GCAGC 3 cut(s) 45, 181, 208
LweI GCATC 3 cut(s) 115, 153, 171
MaeI CTAG 1 cut(s) 231
MalI GATC 4 cut(s) 15, 37, 156, 244
MboI GATC 4 cut(s) 13, 35, 154, 242
MboII GAAGA 2 cut(s) 224, 252
MflI RGATCY 2 cut(s) 35, 242
MluCI AATT 1 cut(s) 70
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 2 cut(s) 32, 39
Mph1103I ATGCAT 1 cut(s) 130
MslI CAYNNNNRTG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 4 cut(s) 13, 35, 154, 242
NlaIII CATG 5 cut(s) 98, 118, 155, 194, 253
NlaIV GGNNCC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 130
NspI RCATGY 2 cut(s) 118, 253
OliI CACNNNNGTG 1 cut(s) 95
PagI TCATGA 1 cut(s) 151
PctI GAATGC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 3 cut(s) 60, 196, 223
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 37
PsuI RGATCY 2 cut(s) 35, 242
RseI CAYNNNNRTG 1 cut(s) 95
SatI GCNGC 3 cut(s) 59, 195, 222
Sau3AI GATC 4 cut(s) 13, 35, 154, 242
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 104
SetI ASST 2 cut(s) 60, 90
SfaNI GCATC 3 cut(s) 115, 153, 171
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 102
TasI AATT 1 cut(s) 70
TseI GCWGC 3 cut(s) 58, 194, 221
Van91I CCANNNNNTGG 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 2 cut(s) 118, 253
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.