FvH4_6g27023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000254
Physical Location & Seq
Reverse (-)
20680800 .. 20681719
920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27023.t1

Sequence Viewer

Length: 558 bp
ATGGCAATTCTATTAAATTCTGGTACGATTTTTGGCTCTTGCCCTCAAGCCCTTATTAACTCTGCTCTCCCTTCTGCTGTTATTTTTGAAGATGCTATGATTAGTAATTTCTGGAATGCTGAGGGTGGGGATGTGGAGTTTATGTTGTCTGTGCTCCCTAGAGAAATTGTTAATCTTATTGTTAATGTGCCAACTGGTTTTAGTGAGAGTGGTGATGATACTAGAATTTGGTGTTCTACTTCTAATGGCCAATTTTCAATGAAGTCTGCCTATAGCTCTATTTTTGATTCTTTTGATTCTTGGAGAAACAAGCAAGTTTTTGAACCTGGTTTTGTTCTTTCTACTGGTTTCAAAAAGATCATCTGGGACTATGCTTTGGAATGGAGAAAGTCTAAACTGAAATCCAATGACAATTACATGTTCAGCTATACTATGCATGCTTGGAAAAAGCCTCCTGAAAATTTCTTCAAGCTCAATGTAGATGGAACTAGAGTATCTCTTATTGGTAAAATTGGTGCTGGTGGTGTCATTCGGAATCATCATGGTGATTGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

186

Amino Acids

20.77

Weight (kDa)

6.29

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 3 cut(s) 16, 225, 460
AfaI GTAC 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 5 cut(s) 89, 258, 323, 352, 469
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 276, 426, 472
AluI AGCT 3 cut(s) 276, 426, 472
Alw21I GWGCWC 1 cut(s) 156
AoxI GGCC 1 cut(s) 247
ApoI RAATTY 3 cut(s) 16, 225, 460
AsuHPI GGTGA 2 cut(s) 224, 557
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 327
BfaI CTAG 3 cut(s) 159, 222, 489
BfmI CTRYAG 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse1I ACTGG 2 cut(s) 199, 349
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 199, 349
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 357, 552
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 112
BsrI ACTGG 2 cut(s) 199, 349
BssMI GATC 2 cut(s) 357, 552
Bst2UI CCWGG 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 360, 555
BstMBI GATC 2 cut(s) 357, 552
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 2 cut(s) 421, 440
BstSCI CCNGG 1 cut(s) 325
BstSFI CTRYAG 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 552
BstYI RGATCY 1 cut(s) 552
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 438
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 24
CviAII CATG 3 cut(s) 418, 437, 542
CviJI RGCY 7 cut(s) 36, 50, 249, 276, 426, 451, 472
CviKI_1 RGCY 7 cut(s) 36, 50, 249, 276, 426, 451, 472
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 359, 554
DpnII GATC 2 cut(s) 357, 552
EaeI YGGCCR 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 438
FaeI CATG 3 cut(s) 421, 440, 545
FaiI YATR 9 cut(s) 98, 143, 273, 372, 419, 429, 434, 438, 543
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 417, 436, 541
FokI GGATG 1 cut(s) 143
FspBI CTAG 3 cut(s) 159, 222, 489
HaeIII GGCC 1 cut(s) 249
Hin1II CATG 3 cut(s) 421, 440, 545
HinfI GANTC 3 cut(s) 287, 296, 535
HphI GGTGA 2 cut(s) 224, 557
Hpy188I TCNGA 2 cut(s) 534, 557
Hpy188III TCNNGA 2 cut(s) 112, 455
HpyAV CCTTC 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 436
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 3 cut(s) 421, 440, 545
Kzo9I GATC 2 cut(s) 357, 552
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 9 cut(s) 6, 97, 180, 312, 330, 339, 349, 468, 504
LweI GCATC 1 cut(s) 82
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 3 cut(s) 159, 222, 489
MalI GATC 2 cut(s) 359, 554
MboI GATC 2 cut(s) 357, 552
MboII GAAGA 2 cut(s) 101, 457
MflI RGATCY 1 cut(s) 552
MhlI GDGCHC 1 cut(s) 156
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 9 cut(s) 6, 16, 106, 165, 225, 251, 412, 460, 510
MluNI TGGCCA 1 cut(s) 249
MnlI CCTC 3 cut(s) 54, 115, 462
Mox20I TGGCCA 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 438
MscI TGGCCA 1 cut(s) 249
MseI TTAA 4 cut(s) 14, 57, 171, 183
MslI CAYNNNNRTG 1 cut(s) 543
Msp20I TGGCCA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 327
NdeII GATC 2 cut(s) 357, 552
NlaIII CATG 3 cut(s) 421, 440, 545
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 2 cut(s) 421, 440
PaeI GCATGC 1 cut(s) 440
PciI ACATGT 1 cut(s) 417
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 287, 296, 535
PscI ACATGT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 552
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 4 cut(s) 14, 57, 171, 183
Sau3AI GATC 2 cut(s) 357, 552
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 156
SetI ASST 4 cut(s) 278, 328, 428, 474
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
SphI GCATGC 1 cut(s) 440
Sse9I AATT 9 cut(s) 6, 16, 106, 165, 225, 251, 412, 460, 510
SspMI CTAG 3 cut(s) 159, 222, 489
StyD4I CCNGG 1 cut(s) 325
TasI AATT 9 cut(s) 6, 16, 106, 165, 225, 251, 412, 460, 510
TfiI GAWTC 3 cut(s) 287, 296, 535
Tru1I TTAA 4 cut(s) 14, 57, 171, 183
Tru9I TTAA 4 cut(s) 14, 57, 171, 183
TspDTI ATGAA 1 cut(s) 275
XapI RAATTY 3 cut(s) 16, 225, 460
XceI RCATGY 2 cut(s) 421, 440
XspI CTAG 3 cut(s) 159, 222, 489
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.