Rmu_sc0001301.1_g000027

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001301.1
OG0000254
Physical Location & Seq
Forward (+)
121544 .. 122673
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001301.1_g000027.1.cds

Sequence Viewer

Length: 870 bp
atgcttgtccaggatttttgggtcagtaatggatggaattttgatctcctaaaggtatgcctccttgatcacattattgatattatcggtaaagttcctatttgtgttaatggttctattgctgataatcttatttggaagcatacttctaatggtgtatttactgttaaaagtgtgtacatgtgctctattggttctgatcttactcctgattttttttggaagaaaatatggagttttaatatccctcacaaactcaaaacctttgccgagattcttgttcaaggaaaactccttaccaactcccaaagacttagaaggcatttaactactaatgagagttgtcacttctaccctggtatccctgaaaccatgctccaccttctcagagattgtacccatgcttctaagatttggaagagcattgctatccctataaaaatgaaagaaattattcttcaatatgctactgagatttctattgcttccaagcttagtattgatagacctcatcagtttgtaacccttcaatggatgaaacctgctgcaaacaatttcaaattgaacattggtggttccaaatcttatgcaggtgtgattggagctggtggtctcattagaacagttctgcttgcccttgatctccacattaaaatattggaagttgaaagtgattcagccattgtggttaacctcataaattctggaaatattgatagtcaccctcttgggactcttattgccaattgcagagatataatacaagagtttcatctctgttctatcctccacatccataggcaatggaactttgcagcggatattttggcaaaggatgatatcaacttctctagaggaaccattttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

8.63

Isoelectric Point (pI)

38.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 581
Acc36I ACCTGC 2 cut(s) 550, 581
AciI CCGC 1 cut(s) 818
AcsI RAATTY 2 cut(s) 37, 700
AfaI GTAC 2 cut(s) 179, 397
AfiI CCNNNNNNNGG 1 cut(s) 531
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 6 cut(s) 284, 461, 530, 559, 565, 668
AjnI CCWGG 2 cut(s) 9, 355
AluBI AGCT 2 cut(s) 493, 605
AluI AGCT 2 cut(s) 493, 605
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 617
ApeKI GCWGC 2 cut(s) 545, 815
ApoI RAATTY 2 cut(s) 37, 700
Asp700I GAANNNNTTC 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 713
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BarI GAAGNNNNNNTAC 2 cut(s) 388, 420
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 532, 827
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 2 cut(s) 11, 357
BciVI GTATCC 1 cut(s) 371
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 852, 868
BfuAI ACCTGC 2 cut(s) 550, 581
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 2 cut(s) 546, 816
BlsI GCNGC 2 cut(s) 547, 817
Bme1390I CCNGG 2 cut(s) 11, 357
BmiI GGNNCC 2 cut(s) 577, 859
BmrFI CCNGG 2 cut(s) 11, 357
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse3DI GCAATG 2 cut(s) 423, 809
BseBI CCWGG 2 cut(s) 11, 357
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 4 cut(s) 38, 540, 792, 841
BseLI CCNNNNNNNGG 1 cut(s) 531
BseMI GCAATG 2 cut(s) 423, 809
BseMII CTCAG 2 cut(s) 400, 462
BseXI GCAGC 2 cut(s) 532, 827
BsiHKAI GWGCWC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 745
Bso31I GGTCTC 1 cut(s) 617
Bsp1286I GDGCHC 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 43, 67, 199, 640
BspACI CCGC 1 cut(s) 818
BspCNI CTCAG 2 cut(s) 399, 463
BspLI GGNNCC 2 cut(s) 577, 859
BspMI ACCTGC 2 cut(s) 550, 581
BspQI GCTCTTC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 2 cut(s) 423, 809
BsrGI TGTACA 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 43, 67, 199, 640
Bst2UI CCWGG 2 cut(s) 11, 357
Bst4CI ACNGT 2 cut(s) 166, 625
Bst6I CTCTTC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 5 cut(s) 314, 386, 408, 471, 494
BstF5I GGATG 4 cut(s) 38, 540, 792, 841
BstKTI GATC 4 cut(s) 46, 70, 202, 643
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 4 cut(s) 43, 67, 199, 640
BstNI CCWGG 2 cut(s) 11, 357
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 9, 355
BstV1I GCAGC 2 cut(s) 532, 827
BsuI GTATCC 1 cut(s) 371
BtsCI GGATG 4 cut(s) 38, 540, 792, 841
BveI ACCTGC 2 cut(s) 550, 581
Cac8I GCNNGC 1 cut(s) 633
Csp6I GTAC 2 cut(s) 178, 396
CviAII CATG 3 cut(s) 181, 373, 401
CviJI RGCY 3 cut(s) 493, 605, 680
CviKI_1 RGCY 3 cut(s) 493, 605, 680
CviQI GTAC 2 cut(s) 178, 396
DdeI CTNAG 5 cut(s) 314, 386, 408, 471, 494
DpnI GATC 4 cut(s) 45, 69, 201, 642
DpnII GATC 4 cut(s) 43, 67, 199, 640
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 9, 355
EcoRV GATATC 1 cut(s) 841
FaeI CATG 3 cut(s) 184, 376, 404
FaqI GGGAC 1 cut(s) 745
FatI CATG 3 cut(s) 180, 372, 400
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 546, 816
FokI GGATG 4 cut(s) 45, 547, 779, 848
Fsp4HI GCNGC 2 cut(s) 546, 816
FspBI CTAG 2 cut(s) 852, 868
GluI GCNGC 2 cut(s) 546, 816
Hin1II CATG 3 cut(s) 184, 376, 404
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 3 cut(s) 274, 674, 733
HpaI GTTAAC 1 cut(s) 691
HphI GGTGA 1 cut(s) 713
Hpy166II GTNNAC 2 cut(s) 178, 691
Hpy188I TCNGA 2 cut(s) 199, 389
Hpy188III TCNNGA 3 cut(s) 209, 705, 852
Hpy8I GTNNAC 2 cut(s) 178, 691
HpyAV CCTTC 3 cut(s) 312, 392, 536
HpyCH4III ACNGT 2 cut(s) 166, 625
HpyCH4V TGCA 4 cut(s) 548, 590, 750, 815
HpyF3I CTNAG 5 cut(s) 314, 386, 408, 471, 494
Hsp92II CATG 3 cut(s) 184, 376, 404
Ksp22I TGATCA 1 cut(s) 67
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 4 cut(s) 43, 67, 199, 640
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 2 cut(s) 381, 602
LpnPI CCDG 9 cut(s) 23, 222, 342, 369, 378, 555, 576, 591, 690
Lsp1109I GCAGC 2 cut(s) 532, 827
MaeI CTAG 2 cut(s) 852, 868
MaeIII GTNAC 3 cut(s) 344, 520, 719
MalI GATC 4 cut(s) 45, 69, 201, 642
MboI GATC 4 cut(s) 43, 67, 199, 640
MboII GAAGA 3 cut(s) 235, 430, 449
MfeI CAATTG 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 6 cut(s) 37, 450, 553, 560, 700, 745
MlyI GAGTC 1 cut(s) 727
MnlI CCTC 7 cut(s) 71, 258, 519, 704, 735, 797, 848
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 6 cut(s) 108, 168, 240, 326, 651, 690
MspA1I CMGCKG 1 cut(s) 818
MspR9I CCNGG 2 cut(s) 11, 357
MunI CAATTG 1 cut(s) 745
MvaI CCWGG 2 cut(s) 11, 357
NdeII GATC 4 cut(s) 43, 67, 199, 640
NlaIII CATG 3 cut(s) 184, 376, 404
NlaIV GGNNCC 2 cut(s) 577, 859
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 2 cut(s) 344, 719
NspI RCATGY 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 581
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 274, 674
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 2 cut(s) 547, 817
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
PscI ACATGT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 9, 355
PspGI CCWGG 2 cut(s) 9, 355
PspN4I GGNNCC 2 cut(s) 577, 859
RsaI GTAC 2 cut(s) 179, 397
RsaNI GTAC 2 cut(s) 178, 396
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 6 cut(s) 108, 168, 240, 326, 651, 690
SatI GCNGC 2 cut(s) 546, 816
Sau3AI GATC 4 cut(s) 43, 67, 199, 640
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 2 cut(s) 11, 357
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 57, 266, 384, 495, 511, 544, 595, 607, 696
Sse9I AATT 6 cut(s) 37, 450, 553, 560, 700, 745
SsiI CCGC 1 cut(s) 818
SspI AATATT 2 cut(s) 657, 712
SspMI CTAG 2 cut(s) 852, 868
StyD4I CCNGG 2 cut(s) 9, 355
TaaI ACNGT 2 cut(s) 166, 625
TasI AATT 6 cut(s) 37, 450, 553, 560, 700, 745
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 2 cut(s) 274, 674
Tru1I TTAA 6 cut(s) 108, 168, 240, 326, 651, 690
Tru9I TTAA 6 cut(s) 108, 168, 240, 326, 651, 690
TseFI GTSAC 2 cut(s) 344, 719
TseI GCWGC 2 cut(s) 545, 815
Tsp45I GTSAC 2 cut(s) 344, 719
TspDTI ATGAA 3 cut(s) 458, 551, 761
XapI RAATTY 2 cut(s) 37, 700
XbaI TCTAGA 1 cut(s) 851
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 2 cut(s) 852, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.