Rmu_sc0003919.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003919.1
OG0000254
Physical Location & Seq
Forward (+)
4762 .. 6929
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003919.1_g000002.1.cds

Sequence Viewer

Length: 834 bp
atggcacatgggaagctctgtcatgggaagctcctgactaatgtgcagagagctagaagacatcttacccttgatgactcttgtcctatttgtcacacagccagtgagtcattatctcatctttttaaagattgccctgctgtttatcgtatatggaactccttctctttgcctgaatctgttgggaacacctttaacatggattgggagggttggttaaatgctcatctccactgcactactaaatcatgcgctggagttaagtggtgctcagtctttgtctttatttgctggtatatctggaagtggagaaacaagttcgttttcgatgcccaatttcaaattcctacaaaccctggtatgttgatctcttctgctgcttctgaatggattaatgctcagactaaggtggacttagataaagcttataatctcaacttactcaattggttaaaacctcccattggtttttgtaaattgaatgttgatggtactagaaatagtttgtctggcaaaattggtgctggtggtgttatcagatcttcctctggagattggatcaaaaggtttcaagtaaacctaggcattggtgaggttttggatgcagaaacatgtgcccacaactacatctgcacgggtagcaccgccatcacccttccatcaccgaagcgccactgttgctgtcgaacccaaccaccatcgccgacaagaaaccagcagcacttgtcccccaccactccaatcccatatttggtgagcctaaaaccagaaacaagaccaacacttatctctgtcacccaccagaaggaagatcccagctatcgccgccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

277

Amino Acids

31.21

Weight (kDa)

9.16

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AciI CCGC 2 cut(s) 645, 826
AclWI GGATC 2 cut(s) 566, 806
AcsI RAATTY 1 cut(s) 342
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 3 cut(s) 464, 751, 805
AflIII ACRYGT 1 cut(s) 611
AgsI TTSAA 3 cut(s) 341, 481, 572
AjnI CCWGG 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 5 cut(s) 16, 31, 53, 425, 819
AluI AGCT 5 cut(s) 16, 31, 53, 425, 819
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 2 cut(s) 566, 806
ApeKI GCWGC 2 cut(s) 377, 718
ApoI RAATTY 1 cut(s) 342
AseI ATTAAT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 580
AspLEI GCGC 2 cut(s) 254, 672
AsuHPI GGTGA 5 cut(s) 602, 643, 654, 766, 787
AvrII CCTAGG 1 cut(s) 580
BaeGI GKGCMC 1 cut(s) 619
BarI GAAGNNNNNNTAC 2 cut(s) 49, 81
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 364, 730
BccI CCATC 4 cut(s) 482, 656, 667, 706
BceAI ACGGC 1 cut(s) 813
BciT130I CCWGG 1 cut(s) 357
BfaI CTAG 3 cut(s) 54, 495, 581
BfoI RGCGCY 1 cut(s) 673
BglII AGATCT 1 cut(s) 539
BisI GCNGC 3 cut(s) 378, 719, 826
BlnI CCTAGG 1 cut(s) 580
BlsI GCNGC 3 cut(s) 379, 720, 827
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 319, 592
BoxI GACNNNNGTC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 64
BpmI CTGGAG 2 cut(s) 276, 570
BsaJI CCNNGG 2 cut(s) 355, 580
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 464, 751, 805
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 355, 580
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 3 cut(s) 464, 751, 805
BseMII CTCAG 2 cut(s) 285, 413
BseNI ACTGG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 2 cut(s) 364, 730
BseYI CCCAGC 1 cut(s) 815
BsgI GTGCAG 3 cut(s) 65, 220, 616
BsiHKAI GWGCWC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 3 cut(s) 464, 751, 805
BsmFI GGGAC 1 cut(s) 712
Bsp1286I GDGCHC 2 cut(s) 272, 619
Bsp143I GATC 4 cut(s) 366, 539, 558, 811
BspACI CCGC 2 cut(s) 645, 826
BspCNI CTCAG 2 cut(s) 284, 412
BspPI GGATC 2 cut(s) 566, 806
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 355, 580
BssMI GATC 4 cut(s) 366, 539, 558, 811
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 1 cut(s) 376
BstDEI CTNAG 4 cut(s) 271, 399, 405, 415
BstF5I GGATG 1 cut(s) 607
BstH2I RGCGCY 1 cut(s) 673
BstHHI GCGC 2 cut(s) 254, 672
BstKTI GATC 4 cut(s) 369, 542, 561, 814
BstMBI GATC 4 cut(s) 366, 539, 558, 811
BstMWI GCNNNNNNNGC 3 cut(s) 639, 678, 825
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 615
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 2 cut(s) 364, 730
BstV2I GAAGAC 1 cut(s) 64
BstX2I RGATCY 2 cut(s) 539, 811
BstYI RGATCY 2 cut(s) 539, 811
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 109, 232, 673
CfoI GCGC 2 cut(s) 254, 672
Csp6I GTAC 1 cut(s) 492
CviAII CATG 5 cut(s) 8, 23, 199, 249, 612
CviJI RGCY 7 cut(s) 16, 31, 53, 101, 425, 759, 819
CviKI_1 RGCY 7 cut(s) 16, 31, 53, 101, 425, 759, 819
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 4 cut(s) 271, 399, 405, 415
DpnI GATC 4 cut(s) 368, 541, 560, 813
DpnII GATC 4 cut(s) 366, 539, 558, 811
DraI TTTAAA 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 5 cut(s) 11, 26, 202, 252, 615
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 712
FatI CATG 5 cut(s) 7, 22, 198, 248, 611
Fnu4HI GCNGC 3 cut(s) 378, 719, 826
FokI GGATG 1 cut(s) 614
Fsp4HI GCNGC 3 cut(s) 378, 719, 826
FspBI CTAG 3 cut(s) 54, 495, 581
GlaI GCGC 2 cut(s) 253, 671
GluI GCNGC 3 cut(s) 378, 719, 826
GsaI CCCAGC 1 cut(s) 819
GsuI CTGGAG 2 cut(s) 276, 570
HaeII RGCGCY 1 cut(s) 673
HhaI GCGC 2 cut(s) 254, 672
Hin1II CATG 5 cut(s) 11, 26, 202, 252, 615
Hin6I GCGC 2 cut(s) 252, 670
HinP1I GCGC 2 cut(s) 252, 670
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 77, 107, 176
HphI GGTGA 5 cut(s) 602, 643, 654, 766, 787
Hpy166II GTNNAC 2 cut(s) 412, 577
Hpy188I TCNGA 3 cut(s) 385, 402, 539
Hpy188III TCNNGA 3 cut(s) 34, 301, 549
Hpy8I GTNNAC 2 cut(s) 412, 577
HpyAV CCTTC 3 cut(s) 172, 665, 799
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4V TGCA 4 cut(s) 46, 237, 605, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 639, 678, 825
HpyF3I CTNAG 4 cut(s) 271, 399, 405, 415
Hsp92II CATG 5 cut(s) 11, 26, 202, 252, 615
HspAI GCGC 2 cut(s) 252, 670
Kzo9I GATC 4 cut(s) 366, 539, 558, 811
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 2 cut(s) 364, 730
LweI GCATC 2 cut(s) 319, 592
MaeI CTAG 3 cut(s) 54, 495, 581
MaeIII GTNAC 2 cut(s) 92, 793
MalI GATC 4 cut(s) 368, 541, 560, 813
MboI GATC 4 cut(s) 366, 539, 558, 811
MboII GAAGA 4 cut(s) 69, 363, 534, 821
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 2 cut(s) 539, 811
MhlI GDGCHC 2 cut(s) 272, 619
MluCI AATT 5 cut(s) 335, 342, 445, 476, 516
MlyI GAGTC 2 cut(s) 71, 116
MnlI CCTC 4 cut(s) 202, 468, 556, 586
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 6 cut(s) 126, 195, 218, 261, 393, 452
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 639, 678, 825
NdeII GATC 4 cut(s) 366, 539, 558, 811
NlaIII CATG 5 cut(s) 11, 26, 202, 252, 615
NmuCI GTSAC 2 cut(s) 92, 793
NspI RCATGY 1 cut(s) 615
PciI ACATGT 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 379, 720, 827
PleI GAGTC 2 cut(s) 71, 115
PpsI GAGTC 2 cut(s) 71, 115
PscI ACATGT 1 cut(s) 611
PshAI GACNNNNGTC 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 393
PsiI TTATAA 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 355
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 539, 811
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SaqAI TTAA 6 cut(s) 126, 195, 218, 261, 393, 452
SatI GCNGC 3 cut(s) 378, 719, 826
Sau3AI GATC 4 cut(s) 366, 539, 558, 811
SchI GAGTC 2 cut(s) 71, 116
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 2 cut(s) 272, 619
SfaNI GCATC 2 cut(s) 319, 592
Sse9I AATT 5 cut(s) 335, 342, 445, 476, 516
SsiI CCGC 2 cut(s) 645, 826
SspMI CTAG 3 cut(s) 54, 495, 581
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 677
TaqI TCGA 2 cut(s) 327, 685
TasI AATT 5 cut(s) 335, 342, 445, 476, 516
TauI GCSGC 1 cut(s) 828
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 6 cut(s) 126, 195, 218, 261, 393, 452
Tru9I TTAA 6 cut(s) 126, 195, 218, 261, 393, 452
TscAI CASTG 3 cut(s) 109, 239, 680
TseFI GTSAC 2 cut(s) 92, 793
TseI GCWGC 2 cut(s) 377, 718
Tsp45I GTSAC 2 cut(s) 92, 793
TspRI CASTG 3 cut(s) 109, 239, 680
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 342
XceI RCATGY 1 cut(s) 615
XmaJI CCTAGG 1 cut(s) 580
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 3 cut(s) 54, 495, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.