Rh2CG613000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000254
Physical Location & Seq
Forward (+)
79039498 .. 79039914
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG613000.1

Sequence Viewer

Length: 417 bp
ATGGCAAGTTCACTGTTAAAAGTGCTTATAAGTTATAATAGCCTTGCCTCAGTTTACACCAACTCCCAGAAGATGTGGAAGTACTTATGGGTTCTTAATATCCTCCTCCCCCCCCCCAAGTTAAAGACTTTTATTTGGTTATTTGTCCAAAGTCGCCTTCTAAGACTCACCTACGATCCTCATTGCAAGCATTGCCCCGGAATACAAGAAACTATGACCCAACTCTGTAGAGATTGTCCTAAAGCTGCCGCAACCTGGAATGTTATTGGTGTTCCTATATCTATGCAAAGAACCTTTACTCTAGACTGGGAAGCCTGGATTGCTGCAAATATCCTTCAGAAAGGAAGTAAGTTTATGCATACTGATTGGTCTCACTCTCATGCCTTCATCTTCACTTGTTGGTTTATATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

16.19

Weight (kDa)

9.48

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 29, 36
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 255
AjnI CCWGG 2 cut(s) 254, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 245, 323
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 160
BbvI GCAGC 2 cut(s) 232, 310
BciT130I CCWGG 2 cut(s) 256, 316
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 3 cut(s) 246, 249, 324
BlsI GCNGC 3 cut(s) 247, 250, 325
BmcAI AGTACT 1 cut(s) 83
Bme1390I CCNGG 3 cut(s) 198, 256, 316
BmrFI CCNGG 3 cut(s) 198, 256, 316
BmrI ACTGGG 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 181, 190
BseBI CCWGG 2 cut(s) 256, 316
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 2 cut(s) 181, 190
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 232, 310
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 375
Bso31I GGTCTC 1 cut(s) 375
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 62
BspPI GGATC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 181, 190
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 256, 316
Bst4CI ACNGT 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 49, 161
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 192, 320
BstNI CCWGG 2 cut(s) 256, 316
BstSCI CCNGG 3 cut(s) 196, 254, 314
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 232, 310
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 380
CviJI RGCY 3 cut(s) 42, 245, 314
CviKI_1 RGCY 3 cut(s) 42, 245, 314
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 49, 161
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 254, 314
EcoT22I ATGCAT 1 cut(s) 360
FaeI CATG 1 cut(s) 383
FatI CATG 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 246, 249, 324
Fsp4HI GCNGC 3 cut(s) 246, 249, 324
FspBI CTAG 1 cut(s) 302
GluI GCNGC 3 cut(s) 246, 249, 324
HapII CCGG 1 cut(s) 198
Hin1II CATG 1 cut(s) 383
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 2 cut(s) 11, 55
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 2 cut(s) 11, 55
HpyAV CCTTC 3 cut(s) 167, 344, 394
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 4 cut(s) 186, 286, 326, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 320
HpyF3I CTNAG 2 cut(s) 49, 161
Hsp92II CATG 1 cut(s) 383
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 80, 211, 241, 268, 292, 301, 328
Lsp1109I GCAGC 2 cut(s) 232, 310
MaeI CTAG 1 cut(s) 302
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 2 cut(s) 82, 382
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 4 cut(s) 58, 113, 116, 189
Mph1103I ATGCAT 1 cut(s) 360
MseI TTAA 3 cut(s) 17, 96, 122
MslI CAYNNNNRTG 1 cut(s) 378
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 3 cut(s) 198, 256, 316
MvaI CCWGG 2 cut(s) 256, 316
MwoI GCNNNNNNNGC 2 cut(s) 192, 320
NciI CCSGG 1 cut(s) 198
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 360
PkrI GCNGC 3 cut(s) 247, 250, 325
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PsiI TTATAA 2 cut(s) 29, 36
Psp6I CCWGG 2 cut(s) 254, 314
PspGI CCWGG 2 cut(s) 254, 314
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 3 cut(s) 17, 96, 122
SatI GCNGC 3 cut(s) 246, 249, 324
Sau3AI GATC 1 cut(s) 175
ScaI AGTACT 1 cut(s) 83
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 3 cut(s) 198, 256, 316
SetI ASST 4 cut(s) 173, 247, 257, 296
SfcI CTRYAG 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 378
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 3 cut(s) 196, 254, 314
TaaI ACNGT 1 cut(s) 15
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 17, 96, 122
Tru9I TTAA 3 cut(s) 17, 96, 122
TscAI CASTG 1 cut(s) 18
TseI GCWGC 2 cut(s) 245, 323
TspDTI ATGAA 1 cut(s) 376
TspRI CASTG 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 301
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.