Rmu_sc0000745.1_g000029

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000745.1
OG0000254
Physical Location & Seq
Forward (+)
108200 .. 109165
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000745.1_g000029.1.cds

Sequence Viewer

Length: 966 bp
atgggtcgggccgacccgtttgccacctctactgggtgggatttgaatctcctatctactgtaattcctagtgatatcattaatcatgtcatcagtgtccctactggttttagtggttgtggtatggacactctaatttggggccctacctctaatggatacttcactgttaaatctgcatacaattccatttttgattactctagtccccagaaccctctttggaaagttatctggaagcttgatacccctcccaagttaaaaacctttctttggactgttatgcataagaaaattcttaccaatgtccagcgtgctactcgtggttttactctgtttctacataccatttgtgcaatgttgctgatgaaactctacacctatttagagattgccccagatccatggccatttggaaatgcttcattaaatctggtaccatccttaattctttctcccttgattggaacagttggattcttgaacaactgcattgtcataccattatcaagaacaatatcaaatggtgcaacatttttgtttttatttgttggttcatctggaagtagaggaataagcaggtctttgatatttcatttactatgcctacttgccctgctaaacttatatgggattatgctgtggagtggaaaaatgccatttacaagactagcgtttccaatatgtacagtctggacttcctggaagaaacctcctgaaaatttttacaaactaaatgttgacgacactcaaaattctgcatctggtaaaattgaggctggcggagtcatcaaagaccacactgagaattgggtgattggcttccaaatttacttaggggttggtgagattctggaggctgaagcctggggtctcttttatggtttgaagttagcatcaagtctgcacatccaaatgtcggaaattgaatccgactctgttgttcacttgttcttgtccagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

321

Amino Acids

35.62

Weight (kDa)

8.22

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 570
Acc65I GGTACC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 436
AciI CCGC 1 cut(s) 783
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 4 cut(s) 294, 721, 754, 828
AcuI CTGAAG 1 cut(s) 882
AfaI GTAC 2 cut(s) 438, 688
AfiI CCNNNNNNNGG 4 cut(s) 33, 273, 464, 919
AgsI TTSAA 4 cut(s) 46, 484, 889, 929
AjnI CCWGG 2 cut(s) 701, 866
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 878
AlwI GGATC 1 cut(s) 395
AoxI GGCC 3 cut(s) 9, 142, 407
ApaI GGGCCC 1 cut(s) 146
ApoI RAATTY 4 cut(s) 294, 721, 754, 828
AseI ATTAAT 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 421
Asp718I GGTACC 1 cut(s) 436
AspS9I GGNCC 3 cut(s) 9, 142, 143
AsuHPI GGTGA 2 cut(s) 826, 857
BaeGI GKGCMC 1 cut(s) 146
BalI TGGCCA 1 cut(s) 409
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 146
BauI CACGAG 1 cut(s) 321
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 703, 868
BciVI GTATCC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 878
BfaI CTAG 3 cut(s) 69, 204, 671
BfuAI ACCTGC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 703, 868
BmgT120I GGNCC 3 cut(s) 9, 142, 143
BmiI GGNNCC 3 cut(s) 143, 144, 438
BmrFI CCNGG 2 cut(s) 703, 868
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 770, 905
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 875
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 404, 867
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 273, 464, 919
Bse1I ACTGG 3 cut(s) 37, 109, 960
Bse3DI GCAATG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 2 cut(s) 703, 868
BseDI CCNNGG 2 cut(s) 404, 867
BseGI GGATG 2 cut(s) 440, 909
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 4 cut(s) 33, 273, 464, 919
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 3 cut(s) 37, 109, 960
BseSI GKGCMC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 890
BshFI GGCC 3 cut(s) 11, 144, 409
BshNI GGYRCC 1 cut(s) 436
BslFI GGGAC 2 cut(s) 83, 192
BslI CCNNNNNNNGG 4 cut(s) 33, 273, 464, 919
BsmAI GTCTC 1 cut(s) 878
BsmFI GGGAC 2 cut(s) 83, 192
BsnI GGCC 3 cut(s) 11, 144, 409
Bso31I GGTCTC 1 cut(s) 878
Bsp120I GGGCCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 146
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 1 cut(s) 783
BspANI GGCC 3 cut(s) 11, 144, 409
BspCNI CTCAG 1 cut(s) 796
BspLI GGNNCC 3 cut(s) 143, 144, 438
BspMI ACCTGC 1 cut(s) 570
BspPI GGATC 1 cut(s) 395
BspT107I GGYRCC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 3 cut(s) 37, 109, 960
BssECI CCNNGG 2 cut(s) 404, 867
BssMI GATC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 404
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 2 cut(s) 703, 868
Bst4CI ACNGT 5 cut(s) 61, 169, 280, 472, 691
BstAUI TGTACA 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 315, 781
BstDEI CTNAG 2 cut(s) 804, 835
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 440, 909
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 878
BstMBI GATC 1 cut(s) 400
BstNI CCWGG 2 cut(s) 703, 868
BstSCI CCNGG 2 cut(s) 701, 866
BstSLI GKGCMC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 400
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 400
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 3 cut(s) 11, 144, 409
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 440, 909
BtsIMutI CAGTG 3 cut(s) 100, 165, 801
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 315, 781
Cfr13I GGNCC 3 cut(s) 9, 142, 143
Csp6I GTAC 2 cut(s) 437, 687
CviAII CATG 2 cut(s) 86, 405
CviJI RGCY 8 cut(s) 11, 144, 241, 409, 779, 822, 860, 866
CviKI_1 RGCY 8 cut(s) 11, 144, 241, 409, 779, 822, 860, 866
CviQI GTAC 2 cut(s) 437, 687
DdeI CTNAG 2 cut(s) 804, 835
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 407
EciI GGCGGA 1 cut(s) 798
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 878
Eco32I GATATC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 882
EcoO109I RGGNCCY 2 cut(s) 142, 143
EcoRII CCWGG 2 cut(s) 701, 866
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 89, 408
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FaqI GGGAC 2 cut(s) 83, 192
FatI CATG 2 cut(s) 85, 404
FokI GGATG 2 cut(s) 427, 896
FriOI GRGCYC 1 cut(s) 146
FspBI CTAG 3 cut(s) 69, 204, 671
GsuI CTGGAG 1 cut(s) 875
HaeIII GGCC 3 cut(s) 11, 144, 409
Hin1II CATG 2 cut(s) 89, 408
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 6 cut(s) 46, 477, 786, 850, 929, 935
HphI GGTGA 2 cut(s) 826, 857
Hpy166II GTNNAC 2 cut(s) 742, 946
Hpy188I TCNGA 2 cut(s) 922, 934
Hpy188III TCNNGA 7 cut(s) 235, 481, 510, 561, 694, 716, 854
Hpy8I GTNNAC 2 cut(s) 742, 946
HpyCH4III ACNGT 5 cut(s) 61, 169, 280, 472, 691
HpyCH4V TGCA 7 cut(s) 179, 286, 356, 492, 530, 761, 907
HpyF3I CTNAG 2 cut(s) 804, 835
Hsp92II CATG 2 cut(s) 89, 408
KpnI GGTACC 1 cut(s) 440
Kzo9I GATC 1 cut(s) 400
LweI GCATC 2 cut(s) 770, 905
MaeI CTAG 3 cut(s) 69, 204, 671
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 1 cut(s) 718
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 409
MluNI TGGCCA 1 cut(s) 409
MlyI GAGTC 2 cut(s) 795, 929
MmeI TCCRAC 3 cut(s) 454, 900, 957
MnlI CCTC 8 cut(s) 37, 160, 228, 261, 563, 723, 769, 850
Mox20I TGGCCA 1 cut(s) 409
Mph1103I ATGCAT 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 421
MscI TGGCCA 1 cut(s) 409
MseI TTAA 5 cut(s) 81, 171, 260, 428, 446
MslI CAYNNNNRTG 1 cut(s) 914
Msp20I TGGCCA 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 703, 868
MvaI CCWGG 2 cut(s) 703, 868
NcoI CCATGG 1 cut(s) 404
NdeII GATC 1 cut(s) 400
NlaIII CATG 2 cut(s) 89, 408
NlaIV GGNNCC 3 cut(s) 143, 144, 438
NsiI ATGCAT 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 4 cut(s) 46, 477, 850, 929
PfoI TCCNGGA 1 cut(s) 701
PleI GAGTC 2 cut(s) 794, 929
PpsI GAGTC 2 cut(s) 794, 929
PshBI ATTAAT 1 cut(s) 81
Psp6I CCWGG 2 cut(s) 701, 866
PspGI CCWGG 2 cut(s) 701, 866
PspN4I GGNNCC 3 cut(s) 143, 144, 438
PspOMI GGGCCC 1 cut(s) 142
PspPI GGNCC 3 cut(s) 9, 142, 143
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 2 cut(s) 438, 688
RsaNI GTAC 2 cut(s) 437, 687
RseI CAYNNNNRTG 1 cut(s) 914
SaqAI TTAA 5 cut(s) 81, 171, 260, 428, 446
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 3 cut(s) 9, 142, 143
SchI GAGTC 2 cut(s) 795, 929
ScrFI CCNGG 2 cut(s) 703, 868
SduI GDGCHC 1 cut(s) 146
SetI ASST 7 cut(s) 29, 152, 243, 269, 383, 584, 715
SfaNI GCATC 2 cut(s) 770, 905
SmiMI CAYNNNNRTG 1 cut(s) 914
SsiI CCGC 1 cut(s) 783
SspMI CTAG 3 cut(s) 69, 204, 671
StyD4I CCNGG 2 cut(s) 701, 866
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 5 cut(s) 61, 169, 280, 472, 691
TatI WGTACW 1 cut(s) 686
TfiI GAWTC 4 cut(s) 46, 477, 850, 929
Tru1I TTAA 5 cut(s) 81, 171, 260, 428, 446
Tru9I TTAA 5 cut(s) 81, 171, 260, 428, 446
TscAI CASTG 3 cut(s) 100, 172, 808
TspDTI ATGAA 4 cut(s) 383, 414, 546, 584
TspRI CASTG 3 cut(s) 100, 172, 808
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 4 cut(s) 294, 721, 754, 828
XmnI GAANNNNTTC 1 cut(s) 421
XspI CTAG 3 cut(s) 69, 204, 671
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.