Rmu_sc0009556.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009556.1
OG0000254
Physical Location & Seq
Forward (+)
5353 .. 5751
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009556.1_g000002.1.cds

Sequence Viewer

Length: 399 bp
atggagatgcaagaatgtcttggatttggattttcatatccttataacccttctaaagttatctttaactatgctgctgaatggtccgaggctgttgctaagactaatgtgaagatgtataggcatgttgaaatgctatcttggcttaaacctggttctggtaatcataagcttaatgttgattgttcaagagtcagtaatggagctactggagcaggtggtgttataagggatgattctgggtgctggtgtgatcgttttatgattaatgttggtgctagtgaggtcctgcaagctgaatcttggggtctctttcatggtccgcacctggccttgagtttaaagatcactaggttggaagttgagtctgacttttctgttattattaacctcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.65

Weight (kDa)

5.75

Isoelectric Point (pI)

27.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 45, 227
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 206
AciI CCGC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 131, 189
AjnI CCWGG 2 cut(s) 151, 327
AluBI AGCT 3 cut(s) 172, 206, 296
AluI AGCT 3 cut(s) 172, 206, 296
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 74
AseI ATTAAT 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 84, 286, 320
AvaII GGWCC 3 cut(s) 84, 286, 320
BbvI GCAGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 2 cut(s) 153, 329
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 279, 351
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 153, 329
Bme18I GGWCC 3 cut(s) 84, 286, 320
BmgT120I GGNCC 3 cut(s) 84, 286, 320
BmrFI CCNGG 2 cut(s) 153, 329
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 355
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 153, 329
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 253, 345
BspACI CCGC 1 cut(s) 323
BspANI GGCC 1 cut(s) 332
BspMI ACCTGC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 253, 345
Bst2UI CCWGG 2 cut(s) 153, 329
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 256, 348
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 253, 345
BstMWI GCNNNNNNNGC 2 cut(s) 142, 212
BstNI CCWGG 2 cut(s) 153, 329
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 151, 327
BstV1I GCAGC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 238
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 3 cut(s) 84, 286, 320
CsiI ACCWGGT 1 cut(s) 151
CviAII CATG 2 cut(s) 125, 317
CviJI RGCY 6 cut(s) 92, 145, 172, 206, 296, 332
CviKI_1 RGCY 6 cut(s) 92, 145, 172, 206, 296, 332
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 255, 347
DpnII GATC 2 cut(s) 253, 345
DraI TTTAAA 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 3 cut(s) 84, 286, 320
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 151, 327
FaeI CATG 2 cut(s) 128, 320
FaiI YATR 9 cut(s) 37, 45, 72, 120, 126, 168, 227, 263, 318
FalI AAGNNNNNCTT 1 cut(s) 35
FatI CATG 2 cut(s) 124, 316
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 279, 351
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 332
Hin1II CATG 2 cut(s) 128, 320
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 4 cut(s) 192, 236, 299, 365
Hpy188I TCNGA 2 cut(s) 88, 370
Hpy188III TCNNGA 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 10, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 212
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 2 cut(s) 128, 320
Kzo9I GATC 2 cut(s) 253, 345
LmnI GCTCC 2 cut(s) 203, 212
Lsp1109I GCAGC 1 cut(s) 61
MabI ACCWGGT 1 cut(s) 151
MaeI CTAG 2 cut(s) 279, 351
MalI GATC 2 cut(s) 255, 347
MboI GATC 2 cut(s) 253, 345
MboII GAAGA 1 cut(s) 124
MlyI GAGTC 2 cut(s) 201, 374
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 2 cut(s) 82, 277
MseI TTAA 6 cut(s) 66, 147, 174, 267, 341, 387
MspR9I CCNGG 2 cut(s) 153, 329
MvaI CCWGG 2 cut(s) 153, 329
MwoI GCNNNNNNNGC 2 cut(s) 142, 212
NdeII GATC 2 cut(s) 253, 345
NlaIII CATG 2 cut(s) 128, 320
NspI RCATGY 1 cut(s) 128
PaqCI CACCTGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 236, 299
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 200, 373
PpsI GAGTC 2 cut(s) 200, 373
PpuMI RGGWCCY 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 267
PsiI TTATAA 2 cut(s) 45, 227
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 151, 327
PspGI CCWGG 2 cut(s) 151, 327
PspPI GGNCC 3 cut(s) 84, 286, 320
PspPPI RGGWCCY 1 cut(s) 286
SaqAI TTAA 6 cut(s) 66, 147, 174, 267, 341, 387
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 253, 345
Sau96I GGNCC 3 cut(s) 84, 286, 320
SchI GAGTC 2 cut(s) 201, 374
ScrFI CCNGG 2 cut(s) 153, 329
SetI ASST 9 cut(s) 154, 174, 208, 220, 288, 298, 330, 356, 393
SexAI ACCWGGT 1 cut(s) 151
SinI GGWCC 3 cut(s) 84, 286, 320
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SsiI CCGC 1 cut(s) 323
SspMI CTAG 2 cut(s) 279, 351
StyD4I CCNGG 2 cut(s) 151, 327
TfiI GAWTC 2 cut(s) 236, 299
Tru1I TTAA 6 cut(s) 66, 147, 174, 267, 341, 387
Tru9I TTAA 6 cut(s) 66, 147, 174, 267, 341, 387
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 24, 305
VpaK11BI GGWCC 3 cut(s) 84, 286, 320
VspI ATTAAT 1 cut(s) 267
XceI RCATGY 1 cut(s) 128
XspI CTAG 2 cut(s) 279, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.