Rorug07G0202100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000254
Physical Location & Seq
Forward (+)
17676839 .. 17677307
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0202100.1

Sequence Viewer

Length: 375 bp
ATGGCTGGAGGCATAACTGGGGATCACGATGTGATTGTCAATTTGGATTCGACGCTGGTTTCCTTGGGGGACGCGGGAGCTGCTGCGTTCCAGGACGACTTCTGGTATATGGCCGGCAGGCTGCTGGCACCGAAAGCCAAGTTCTCGGGATTCAAAGGGACCATCGCCACTATTTGGGGTGTCAGATCGGGTCTCACTATACAAGATGCCGGAGAGCGTTTTGTTTTTCAGTTCAATAGTGAAGCGGTGCGTAATCGCATCTTGCATGGGGGTCCTTGGTTCTACCGTAATACCATGCTGGTAGTAGGAGAGTATGATGGGATTTTTCCAGTGGAGGATGTGTCGTGGAATACAATGGAGGCTTGGGTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

4.77

Isoelectric Point (pI)

28.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 104 3.3e-09 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 174
AccII CGCG 1 cut(s) 74
AciI CCGC 2 cut(s) 74, 245
AclWI GGATC 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 2 cut(s) 154, 235
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 80, 83, 121
AspS9I GGNCC 2 cut(s) 159, 272
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 2 cut(s) 159, 272
BanI GGYRCC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 67, 70, 108
BccI CCATC 2 cut(s) 170, 311
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 197
BisI GCNGC 3 cut(s) 81, 84, 122
BlsI GCNGC 3 cut(s) 82, 85, 123
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 2 cut(s) 159, 272
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 159, 272
BmiI GGNNCC 3 cut(s) 129, 160, 273
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 2 cut(s) 196, 267
BmuI ACTGGG 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 63, 275
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 22, 329
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 63, 275
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 22, 329
BseXI GCAGC 3 cut(s) 67, 70, 108
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 2 cut(s) 114, 210
BslFI GGGAC 2 cut(s) 83, 172
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 83, 172
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 145
Bsp143I GATC 2 cut(s) 22, 185
BspACI CCGC 2 cut(s) 74, 245
BspANI GGCC 1 cut(s) 113
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 3 cut(s) 129, 160, 273
BspPI GGATC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 22, 329
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 63, 275
BssMI GATC 2 cut(s) 22, 185
BssT1I CCWWGG 2 cut(s) 63, 275
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 115, 119, 126
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 2 cut(s) 25, 188
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 22, 185
BstMWI GCNNNNNNNGC 3 cut(s) 80, 134, 368
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 67, 70, 108
BsuRI GGCC 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 115, 119, 126
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 159, 272
CseI GACGC 2 cut(s) 61, 80
CviAII CATG 2 cut(s) 266, 295
CviJI RGCY 6 cut(s) 5, 80, 113, 121, 137, 362
CviKI_1 RGCY 6 cut(s) 5, 80, 113, 121, 137, 362
DpnI GATC 2 cut(s) 24, 187
DpnII GATC 2 cut(s) 22, 185
DraIII CACNNNGTG 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 63, 275
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 159, 272
Eco88I CYCGRG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 63, 275
ErhI CCWWGG 2 cut(s) 63, 275
FaeI CATG 2 cut(s) 269, 298
FaiI YATR 7 cut(s) 14, 108, 110, 200, 267, 296, 315
FaqI GGGAC 2 cut(s) 83, 172
FatI CATG 2 cut(s) 265, 294
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 81, 84, 122
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 3 cut(s) 81, 84, 122
GluI GCNGC 3 cut(s) 81, 84, 122
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 113
HapII CCGG 2 cut(s) 114, 210
HgaI GACGC 2 cut(s) 61, 80
Hin1II CATG 2 cut(s) 269, 298
HinfI GANTC 2 cut(s) 47, 150
HpaII CCGG 2 cut(s) 114, 210
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 2 cut(s) 26, 147
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 134, 368
Hsp92II CATG 2 cut(s) 269, 298
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 22, 185
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 3 cut(s) 67, 70, 108
LweI GCATC 2 cut(s) 196, 267
MalI GATC 2 cut(s) 24, 187
MboI GATC 2 cut(s) 22, 185
MluCI AATT 1 cut(s) 40
MnlI CCTC 2 cut(s) 328, 352
MroNI GCCGGC 1 cut(s) 113
MspI CCGG 2 cut(s) 114, 210
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 80, 134, 368
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 2 cut(s) 22, 185
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 269, 298
NlaIV GGNNCC 3 cut(s) 129, 160, 273
PdiI GCCGGC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 47, 150
PflMI CCANNNNNTGG 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 82, 85, 123
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 129, 160, 273
PspPI GGNCC 2 cut(s) 159, 272
PspPPI RGGWCCY 1 cut(s) 272
SatI GCNGC 3 cut(s) 81, 84, 122
Sau3AI GATC 2 cut(s) 22, 185
Sau96I GGNCC 2 cut(s) 159, 272
ScrFI CCNGG 1 cut(s) 92
SetI ASST 1 cut(s) 82
SfaNI GCATC 2 cut(s) 196, 267
SinI GGWCC 2 cut(s) 159, 272
Sse9I AATT 1 cut(s) 40
SsiI CCGC 2 cut(s) 74, 245
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 2 cut(s) 63, 275
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 40
TfiI GAWTC 2 cut(s) 47, 150
TscAI CASTG 1 cut(s) 336
TseI GCWGC 3 cut(s) 80, 83, 121
TspRI CASTG 1 cut(s) 336
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 159, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.