Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AfaI | GTAC | 2 cut(s) | 34, 284 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 60, 105 |
| AflIII | ACRYGT | 1 cut(s) | 186 |
| AjiI | CACGTC | 1 cut(s) | 187 |
| AjnI | CCWGG | 2 cut(s) | 28, 54 |
| AluBI | AGCT | 1 cut(s) | 334 |
| AluI | AGCT | 1 cut(s) | 334 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 176, 208 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BccI | CCATC | 2 cut(s) | 14, 338 |
| BciT130I | CCWGG | 2 cut(s) | 30, 56 |
| BfmI | CTRYAG | 1 cut(s) | 315 |
| Bme1390I | CCNGG | 2 cut(s) | 30, 56 |
| BmgBI | CACGTC | 1 cut(s) | 187 |
| BmrFI | CCNGG | 2 cut(s) | 30, 56 |
| BsaJI | CCNNGG | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 35, 65 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 60, 105 |
| Bse1I | ACTGG | 1 cut(s) | 408 |
| BseBI | CCWGG | 2 cut(s) | 30, 56 |
| BseDI | CCNNGG | 1 cut(s) | 54 |
| BseGI | GGATG | 1 cut(s) | 291 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 60, 105 |
| BseNI | ACTGG | 1 cut(s) | 408 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 60, 105 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1407I | TGTACA | 1 cut(s) | 282 |
| Bsp143I | GATC | 1 cut(s) | 396 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BsrGI | TGTACA | 1 cut(s) | 282 |
| BsrI | ACTGG | 1 cut(s) | 408 |
| BssECI | CCNNGG | 1 cut(s) | 54 |
| BssMI | GATC | 1 cut(s) | 396 |
| Bst2UI | CCWGG | 2 cut(s) | 30, 56 |
| Bst4CI | ACNGT | 1 cut(s) | 68 |
| BstAUI | TGTACA | 1 cut(s) | 282 |
| BstF5I | GGATG | 1 cut(s) | 291 |
| BstKTI | GATC | 1 cut(s) | 399 |
| BstMBI | GATC | 1 cut(s) | 396 |
| BstNI | CCWGG | 2 cut(s) | 30, 56 |
| BstNSI | RCATGY | 1 cut(s) | 210 |
| BstSCI | CCNGG | 2 cut(s) | 28, 54 |
| BstSFI | CTRYAG | 1 cut(s) | 315 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtrI | CACGTC | 1 cut(s) | 187 |
| BtsCI | GGATG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 1 cut(s) | 401 |
| CsiI | ACCWGGT | 1 cut(s) | 28 |
| Csp6I | GTAC | 2 cut(s) | 33, 283 |
| CviAII | CATG | 1 cut(s) | 207 |
| CviJI | RGCY | 3 cut(s) | 5, 334, 380 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 334, 380 |
| CviQI | GTAC | 2 cut(s) | 33, 283 |
| DpnI | GATC | 1 cut(s) | 398 |
| DpnII | GATC | 1 cut(s) | 396 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EcoRII | CCWGG | 2 cut(s) | 28, 54 |
| FaeI | CATG | 1 cut(s) | 210 |
| FaiI | YATR | 7 cut(s) | 96, 200, 208, 224, 226, 234, 281 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 164, 196, 346, 378 |
| FatI | CATG | 1 cut(s) | 206 |
| FokI | GGATG | 1 cut(s) | 278 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| Hin1II | CATG | 1 cut(s) | 210 |
| HinfI | GANTC | 2 cut(s) | 73, 387 |
| Hpy188I | TCNGA | 1 cut(s) | 296 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 106, 157, 394 |
| HpyCH4III | ACNGT | 1 cut(s) | 68 |
| HpyCH4IV | ACGT | 1 cut(s) | 186 |
| HpyCH4V | TGCA | 2 cut(s) | 88, 126 |
| HpySE526I | ACGT | 1 cut(s) | 186 |
| Hsp92II | CATG | 1 cut(s) | 210 |
| Kzo9I | GATC | 1 cut(s) | 396 |
| MabI | ACCWGGT | 1 cut(s) | 28 |
| MaeII | ACGT | 1 cut(s) | 186 |
| MalI | GATC | 1 cut(s) | 398 |
| MboI | GATC | 1 cut(s) | 396 |
| MboII | GAAGA | 1 cut(s) | 319 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 408 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 396 |
| MmeI | TCCRAC | 2 cut(s) | 50, 319 |
| MnlI | CCTC | 2 cut(s) | 159, 299 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 24, 42 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 2 cut(s) | 30, 56 |
| MvaI | CCWGG | 2 cut(s) | 30, 56 |
| NdeII | GATC | 1 cut(s) | 396 |
| NlaIII | CATG | 1 cut(s) | 210 |
| NspI | RCATGY | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 73 |
| PleI | GAGTC | 1 cut(s) | 395 |
| PpsI | GAGTC | 1 cut(s) | 395 |
| Psp6I | CCWGG | 2 cut(s) | 28, 54 |
| PspGI | CCWGG | 2 cut(s) | 28, 54 |
| RsaI | GTAC | 2 cut(s) | 34, 284 |
| RsaNI | GTAC | 2 cut(s) | 33, 283 |
| SaqAI | TTAA | 2 cut(s) | 24, 42 |
| Sau3AI | GATC | 1 cut(s) | 396 |
| SchI | GAGTC | 1 cut(s) | 396 |
| ScrFI | CCNGG | 2 cut(s) | 30, 56 |
| SetI | ASST | 5 cut(s) | 31, 189, 291, 316, 336 |
| SexAI | ACCWGGT | 1 cut(s) | 28 |
| SfcI | CTRYAG | 1 cut(s) | 315 |
| Sse9I | AATT | 1 cut(s) | 408 |
| SspI | AATATT | 1 cut(s) | 130 |
| StyD4I | CCNGG | 2 cut(s) | 28, 54 |
| TaaI | ACNGT | 1 cut(s) | 68 |
| TaiI | ACGT | 1 cut(s) | 189 |
| TaqI | TCGA | 1 cut(s) | 352 |
| TasI | AATT | 1 cut(s) | 408 |
| TatI | WGTACW | 1 cut(s) | 282 |
| TfiI | GAWTC | 1 cut(s) | 73 |
| Tru1I | TTAA | 2 cut(s) | 24, 42 |
| Tru9I | TTAA | 2 cut(s) | 24, 42 |
| TscAI | CASTG | 1 cut(s) | 408 |
| TspDTI | ATGAA | 1 cut(s) | 142 |
| TspRI | CASTG | 1 cut(s) | 408 |
| XceI | RCATGY | 1 cut(s) | 210 |