FvH4_6g25791

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000254
Physical Location & Seq
Reverse (-)
19769184 .. 19769626
443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25791.t1

Sequence Viewer

Length: 441 bp
ATGGGGACATTGGATGGAAGTGGTTGTTGGAAGAATGGCTTTATGATTAACATTGGTTCTGGAGACGTGCTCCAAGCTGAGGCCTGGGGTCTTTTTTATGGCATTCAATTGACTTTAGACATGCAAATTTCCAATTTGGAAGTGGAGTCAGGTTCTGCTGTTCTCATCAATCTTCTGCAGAATTATGATAGTGAGTATCACCCTCTGGGCACCATTGTGACAAATTGCAGGTCTATGCTTCAACATTTTGCCTCAGTCCATGTTAAGCATGTTCACCGTGAGCGGAATATGGTTGCTGATTTGCTGGCCAAGAACAGTACTCTCAATGCTCAAGGCATCTGTTATCTCTATGAGCCCCCTGCTATTGTTACTGAAGCTCTCCTTGATGATATTGTGGGAGTTGCTAGGTGTAGAAGTTTTAGAACCAGTAGTACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.01

Weight (kDa)

5.39

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 19 - 105 1.1e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 1 cut(s) 283
AciI CCGC 1 cut(s) 283
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 2 cut(s) 319, 433
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 107, 242
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 2 cut(s) 77, 377
AluI AGCT 2 cut(s) 77, 377
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 155
AoxI GGCC 2 cut(s) 81, 306
ApoI RAATTY 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AsuHPI GGTGA 2 cut(s) 191, 266
BaeGI GKGCMC 1 cut(s) 212
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 72
BbvCI CCTCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 219
BmcAI AGTACT 2 cut(s) 319, 433
Bme1390I CCNGG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 54, 86
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 426, 439
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 69, 267
BseNI ACTGG 2 cut(s) 426, 439
BseSI GKGCMC 1 cut(s) 212
BshFI GGCC 2 cut(s) 83, 308
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 2 cut(s) 83, 308
Bsp1286I GDGCHC 3 cut(s) 72, 212, 357
BspACI CCGC 1 cut(s) 283
BspANI GGCC 2 cut(s) 83, 308
BspCNI CTCAG 2 cut(s) 70, 266
BspLI GGNNCC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 283
BsrI ACTGG 2 cut(s) 426, 439
BssECI CCNNGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 278, 317
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 78, 253
BstF5I GGATG 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 57
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 2 cut(s) 124, 272
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 176
BstSLI GKGCMC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 83, 308
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 155
Csp6I GTAC 2 cut(s) 318, 432
CviAII CATG 3 cut(s) 121, 260, 269
CviJI RGCY 6 cut(s) 39, 77, 83, 308, 355, 377
CviKI_1 RGCY 6 cut(s) 39, 77, 83, 308, 355, 377
CviQI GTAC 2 cut(s) 318, 432
DdeI CTNAG 2 cut(s) 78, 253
EaeI YGGCCR 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 83
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 3 cut(s) 124, 263, 272
FaiI YATR 9 cut(s) 44, 99, 122, 186, 236, 261, 270, 290, 351
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 366, 398
FaqI GGGAC 1 cut(s) 19
FatI CATG 3 cut(s) 120, 259, 268
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 357
FspBI CTAG 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 83, 308
Hin1II CATG 3 cut(s) 124, 263, 272
HinfI GANTC 1 cut(s) 146
HphI GGTGA 2 cut(s) 191, 266
Hpy166II GTNNAC 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 278, 317
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 124, 178, 228
HpyF3I CTNAG 2 cut(s) 78, 253
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 3 cut(s) 124, 263, 272
LmnI GCTCC 1 cut(s) 75
LpnPI CCDG 9 cut(s) 45, 70, 97, 135, 191, 214, 290, 372, 420
LweI GCATC 1 cut(s) 345
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 217, 367
MbiI CCGCTC 1 cut(s) 283
MboII GAAGA 2 cut(s) 43, 164
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 3 cut(s) 72, 212, 357
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 107, 126, 133, 181, 223
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 3 cut(s) 73, 213, 262
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 2 cut(s) 48, 264
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 85
MunI CAATTG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 85
NlaIII CATG 3 cut(s) 124, 263, 272
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 2 cut(s) 124, 272
OliI CACNNNNGTG 1 cut(s) 215
PceI AGGCCT 1 cut(s) 83
PctI GAATGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 211
PsrI GAACNNNNNNTAC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 319, 433
RsaNI GTAC 2 cut(s) 318, 432
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 48, 264
ScaI AGTACT 2 cut(s) 319, 433
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 3 cut(s) 72, 212, 357
SetI ASST 6 cut(s) 69, 79, 154, 233, 379, 410
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 5 cut(s) 107, 126, 133, 181, 223
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 1 cut(s) 283
SspMI CTAG 1 cut(s) 405
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 278, 317
TaiI ACGT 1 cut(s) 69
TasI AATT 5 cut(s) 107, 126, 133, 181, 223
TatI WGTACW 2 cut(s) 317, 431
Tru1I TTAA 2 cut(s) 48, 264
Tru9I TTAA 2 cut(s) 48, 264
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
XapI RAATTY 1 cut(s) 126
XceI RCATGY 2 cut(s) 124, 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 1 cut(s) 405
ZrmI AGTACT 2 cut(s) 319, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.