FvH4_1g25671

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000254
Physical Location & Seq
Forward (+)
17520084 .. 17520671
588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25671.t1

Sequence Viewer

Length: 498 bp
ATGAGAATCTGGACTGATGCTAATATCAAGAGTAATATTGAAAATGCTTTCAGCTACTCTTATCATTCATGGAAGAAGCCTGCTATTGGTTGGTATAAGCTGAACATTGATGGTTCTAGGAATTCTAGTTCTGGCAAAATTGGTGCTGCTGGAACTATAAGAGATCATCCTGGTTCTTGGATTTCTGGCTTTCAAATAAATCTTGGTATTGATTCGGCCATTCTTGTTCAACTTCTTCAGATGAATGATTGTGGTTTACATCCCCTGGGTTCCTTGATTGCTGGTTGCCTAAACCTCATAACCAAGTTTAACATTGCCAAGATCAGCCACATTTTAGAGAAGGAAACATGGTTGTTGATGCTCTTGCCAAAGATAGCATCAAATCATAGCTTCGGTTTAGTCCTCTTTGACAATCCTCCTATCCATGCTGCTCAATCTTATCTTGATGATATTTCTGCTATGTCCAGAGCTAGAAGATGCTATACTTATAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

166

Amino Acids

18.32

Weight (kDa)

9.03

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 3 cut(s) 41, 194, 230
AjnI CCWGG 2 cut(s) 169, 264
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 4 cut(s) 54, 100, 390, 470
AluI AGCT 4 cut(s) 54, 100, 390, 470
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 146, 428
ApoI RAATTY 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 466, 498
BbvI GCAGC 2 cut(s) 133, 415
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 171, 266
BfaI CTAG 3 cut(s) 117, 126, 471
BisI GCNGC 2 cut(s) 147, 429
BlsI GCNGC 2 cut(s) 148, 430
Bme1390I CCNGG 2 cut(s) 171, 266
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 171, 266
BmsI GCATC 4 cut(s) 7, 348, 386, 467
BsaJI CCNNGG 2 cut(s) 264, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 171, 266
BseDI CCNNGG 2 cut(s) 264, 265
BseGI GGATG 2 cut(s) 166, 259
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 133, 415
BshFI GGCC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 163, 321
BspANI GGCC 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 264, 265
BssMI GATC 2 cut(s) 163, 321
Bst2UI CCWGG 2 cut(s) 171, 266
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 166, 259
BstKTI GATC 2 cut(s) 166, 324
BstMBI GATC 2 cut(s) 163, 321
BstNI CCWGG 2 cut(s) 171, 266
BstSCI CCNGG 2 cut(s) 169, 264
BstV1I GCAGC 2 cut(s) 133, 415
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 166, 259
Cac8I GCNNGC 1 cut(s) 81
CviAII CATG 3 cut(s) 69, 348, 425
CviJI RGCY 8 cut(s) 54, 79, 100, 189, 218, 327, 390, 470
CviKI_1 RGCY 8 cut(s) 54, 79, 100, 189, 218, 327, 390, 470
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 165, 323
DpnII GATC 2 cut(s) 163, 321
EaeI YGGCCR 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 169, 264
FaeI CATG 3 cut(s) 72, 351, 428
FatI CATG 3 cut(s) 68, 347, 424
Fnu4HI GCNGC 2 cut(s) 147, 429
FokI GGATG 2 cut(s) 153, 246
Fsp4HI GCNGC 2 cut(s) 147, 429
FspBI CTAG 3 cut(s) 117, 126, 471
GluI GCNGC 2 cut(s) 147, 429
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 3 cut(s) 72, 351, 428
HinfI GANTC 2 cut(s) 6, 212
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 4 cut(s) 10, 28, 443, 465
Hpy8I GTNNAC 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 334
HpyF3I CTNAG 1 cut(s) 495
Hsp92II CATG 3 cut(s) 72, 351, 428
Kzo9I GATC 2 cut(s) 163, 321
Lsp1109I GCAGC 2 cut(s) 133, 415
LweI GCATC 4 cut(s) 7, 348, 386, 467
MaeI CTAG 3 cut(s) 117, 126, 471
MalI GATC 2 cut(s) 165, 323
MboI GATC 2 cut(s) 163, 321
MboII GAAGA 3 cut(s) 85, 227, 486
MluCI AATT 2 cut(s) 121, 138
MnlI CCTC 3 cut(s) 305, 413, 426
MseI TTAA 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 171, 266
MvaI CCWGG 2 cut(s) 171, 266
NdeII GATC 2 cut(s) 163, 321
NlaIII CATG 3 cut(s) 72, 351, 428
NlaIV GGNNCC 1 cut(s) 271
PasI CCCWGGG 1 cut(s) 265
PfeI GAWTC 2 cut(s) 6, 212
PkrI GCNGC 2 cut(s) 148, 430
PsiI TTATAA 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 169, 264
PspGI CCWGG 2 cut(s) 169, 264
PspN4I GGNNCC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 147, 429
Sau3AI GATC 2 cut(s) 163, 321
ScrFI CCNGG 2 cut(s) 171, 266
SetI ASST 5 cut(s) 56, 102, 297, 392, 472
SfaNI GCATC 4 cut(s) 7, 348, 386, 467
Sse9I AATT 2 cut(s) 121, 138
SspI AATATT 1 cut(s) 37
SspMI CTAG 3 cut(s) 117, 126, 471
StyD4I CCNGG 2 cut(s) 169, 264
TasI AATT 2 cut(s) 121, 138
TfiI GAWTC 2 cut(s) 6, 212
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 2 cut(s) 146, 428
TspDTI ATGAA 2 cut(s) 57, 257
XapI RAATTY 1 cut(s) 121
XspI CTAG 3 cut(s) 117, 126, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.