RchiOBHm_Chr1g0334981

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000254
Physical Location & Seq
Forward (+)
27184521 .. 27184979
459 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56366

Sequence Viewer

Length: 438 bp
ATGTTTAGGCATGTTGAAATGCTATCTTGGCTTAAACCTGGTTCTGGTAATTATAAGCTTAATGTTGATGGTTCAAGAGTCAGTAATGGAGCTACTGGAGCTGGTGGTGTTATAAGGGATGATTCTGGGTGCTGGTGTGGTGGTTTTATGATTAATGTTGGTGCTGGTGAGGTCTTGCAAGCTGAATCTTGGGGTCTCTCTCTTGGTCTGCACCTGGCCTTGAGTTTAAAGATCACTAGGTTGGAAGTTGAGTCTGACTCTTCTGTTCTTATTAACCTCATTCATAGTGACAGTATTGATCTTCATCCCCTGGGAACATTAATTATGAACTGCAGGAATCTGATGCAGGAGTTTGAGTTTATTCAGATGAAACACAATCATGGCGAGCGTAATATGGTTGCAGATCTACTGGCTAAGAACAGTATCCTTCATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.83

Weight (kDa)

5.92

Isoelectric Point (pI)

20.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 21 - 140 1.5e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 54, 113
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 17, 75
AjnI CCWGG 3 cut(s) 37, 213, 309
AluBI AGCT 4 cut(s) 58, 92, 101, 182
AluI AGCT 4 cut(s) 58, 92, 101, 182
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 1 cut(s) 216
AseI ATTAAT 2 cut(s) 153, 320
AsuHPI GGTGA 1 cut(s) 179
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 39, 215, 311
BciVI GTATCC 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 331
BfuI GTATCC 1 cut(s) 434
BglII AGATCT 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 39, 215, 311
BmrFI CCNGG 3 cut(s) 39, 215, 311
BmsI GCATC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 309, 310
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 100, 414
Bse8I GATNNNNATC 1 cut(s) 303
BseBI CCWGG 3 cut(s) 39, 215, 311
BseDI CCNNGG 2 cut(s) 309, 310
BseGI GGATG 2 cut(s) 124, 304
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 100, 414
BsgI GTGCAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 218
Bso31I GGTCTC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 231, 298, 403
BspANI GGCC 1 cut(s) 218
BspMAI CTGCAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 100, 414
BssECI CCNNGG 2 cut(s) 309, 310
BssMI GATC 3 cut(s) 231, 298, 403
Bst2UI CCWGG 3 cut(s) 39, 215, 311
Bst4CI ACNGT 2 cut(s) 293, 422
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 180, 386
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 124, 304
BstKTI GATC 3 cut(s) 234, 301, 406
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 3 cut(s) 231, 298, 403
BstMWI GCNNNNNNNGC 2 cut(s) 28, 98
BstNI CCWGG 3 cut(s) 39, 215, 311
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 3 cut(s) 37, 213, 309
BstSFI CTRYAG 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 2 cut(s) 124, 304
Cac8I GCNNGC 2 cut(s) 180, 386
CsiI ACCWGGT 1 cut(s) 37
CviAII CATG 3 cut(s) 11, 380, 431
CviJI RGCY 7 cut(s) 31, 58, 92, 101, 182, 218, 413
CviKI_1 RGCY 7 cut(s) 31, 58, 92, 101, 182, 218, 413
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 233, 300, 405
DpnII GATC 3 cut(s) 231, 298, 403
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 37, 213, 309
FaeI CATG 3 cut(s) 14, 383, 434
FaiI YATR 9 cut(s) 12, 54, 113, 149, 285, 326, 381, 395, 432
FatI CATG 3 cut(s) 10, 379, 430
FokI GGATG 2 cut(s) 131, 291
FspBI CTAG 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 218
Hin1II CATG 3 cut(s) 14, 383, 434
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 6 cut(s) 78, 122, 185, 251, 257, 337
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 256, 342, 366
Hpy188III TCNNGA 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 2 cut(s) 293, 422
HpyCH4V TGCA 5 cut(s) 178, 211, 333, 346, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 98
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 3 cut(s) 14, 383, 434
Kzo9I GATC 3 cut(s) 231, 298, 403
LmnI GCTCC 2 cut(s) 89, 98
LweI GCATC 1 cut(s) 333
MabI ACCWGGT 1 cut(s) 37
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 233, 300, 405
MboI GATC 3 cut(s) 231, 298, 403
MboII GAAGA 2 cut(s) 252, 293
MflI RGATCY 1 cut(s) 403
MluCI AATT 2 cut(s) 49, 321
MlyI GAGTC 3 cut(s) 87, 251, 260
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 2 cut(s) 163, 287
MseI TTAA 6 cut(s) 33, 60, 153, 227, 273, 320
MslI CAYNNNNRTG 1 cut(s) 378
MspR9I CCNGG 3 cut(s) 39, 215, 311
MvaI CCWGG 3 cut(s) 39, 215, 311
MwoI GCNNNNNNNGC 2 cut(s) 28, 98
NdeII GATC 3 cut(s) 231, 298, 403
NlaIII CATG 3 cut(s) 14, 383, 434
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 1 cut(s) 14
PasI CCCWGGG 1 cut(s) 310
PfeI GAWTC 3 cut(s) 122, 185, 337
PleI GAGTC 3 cut(s) 86, 251, 259
PpsI GAGTC 3 cut(s) 86, 251, 259
PshBI ATTAAT 2 cut(s) 153, 320
PsiI TTATAA 2 cut(s) 54, 113
Psp6I CCWGG 3 cut(s) 37, 213, 309
PspGI CCWGG 3 cut(s) 37, 213, 309
PstI CTGCAG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 403
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 6 cut(s) 33, 60, 153, 227, 273, 320
Sau3AI GATC 3 cut(s) 231, 298, 403
SchI GAGTC 3 cut(s) 87, 251, 260
ScrFI CCNGG 3 cut(s) 39, 215, 311
SetI ASST 9 cut(s) 40, 60, 94, 103, 174, 184, 216, 242, 279
SexAI ACCWGGT 1 cut(s) 37
SfaNI GCATC 1 cut(s) 333
SfcI CTRYAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 2 cut(s) 49, 321
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 37, 213, 309
TaaI ACNGT 2 cut(s) 293, 422
TasI AATT 2 cut(s) 49, 321
TfiI GAWTC 3 cut(s) 122, 185, 337
Tru1I TTAA 6 cut(s) 33, 60, 153, 227, 273, 320
Tru9I TTAA 6 cut(s) 33, 60, 153, 227, 273, 320
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 5 cut(s) 272, 293, 341, 383, 419
VspI ATTAAT 2 cut(s) 153, 320
XceI RCATGY 1 cut(s) 14
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.