FvH4_3g27901

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000254
Physical Location & Seq
Reverse (-)
20931046 .. 20932622
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27901.t1

Sequence Viewer

Length: 1491 bp
ATGGTGTGCAGACCTACATGTTTTGGTGGCTTGGGAATAAAGAGATCTGCTGATATGAATAGGGCTATGCTTGCTAAAGCTAGTTGGAGGATGGCCCAAGGCGATAATGGTCTTTGGAATAAGATCTACCAGCAGAAATACCTGCATTCTAGCTCTATGTTCCAGGATAACTACAAGAAGCCTTCTAACTGTTCTCCTACCTGGACTGCTATTGTTTCTGGTGCTAGTTTTGATTTAGCTTTGATTGGTGCAAATATTGACCTACATGCTACTGTTGGTGAGTTTTGGATTGAGGGAAGCTGGAATTTGCCTCTGCTCTATCTTTCCTTGCCGCCTGAAGTTGTGGACATCATCTCTGCTATTCCCATTTCTCAATGTGACTTGCAGGATAAAATTATGTGGGGTGGTACTTCTTTTGGAGTTTTTTCTGTAAAGTCTGCCTATAGGTTGCTTTGTGATGATTATGACTTTCAGAGTTACCCTTGGTTGAAGAATTGGTCCCTGAATATTCCCCCCAAGCTTAAAATTTTTTTATGGACTTTTGTCTCCAGTAAGCTGCTGACTAATATGCAGAGAGTTAAAAGACACCTTTTTGGGAATCCTTGCTGTCATCATTGTACAGATGCTCCTAAAACTATGTTGCATCTGTTCCAGGATTGTCCTATGGCTATGATGGTTTGGAGATCTTTTAACATTCCTATCAATATGTGGAACACTTTTACTCTAAATTGGGATGGCTGGCTTTTTGCTAATCTTATGCAAGACCGGTGTCATATCAATAATATGAATTGGAATATTTTCTTCATTTTCTGCTGTTGGTTTATTTGGAAGTGGAGGTGTAAGTGCATTTTTGAGGAGAGGTTCCGGTATCCCTATAACTTTACTGATGTCATTCTTAACTATGCTGCTGAATGGACCAAGGCATCTGCCAAGCATAAGGTGCAAAGAGTTGAACAGGTGGAAGCTTTATCTTGGATCAAACCTGTTCTTGGAGTTCACAAATTAAATGTTGATGGTTCAAGAACCAGAGCTGGTGATATTGGTGCTGGAGGGATCATTAGGGATAGCAGTGGTTGCTGGTGTGGTGGTTTTATGGTTAATATTGGTGCTGGCGAAGTTTTACAAGCAGAAGCTTGGGGCCTTTTCTATGGCATTCAACTGGCCTTTAGTATGAAAATTCCTAAGTTGGAGATAGAATCTGATTCTGTTGTTCTGGTTAATTTGCTGCAGAATTCTGATATGGATGTTCACCCTCTAGGCACCATTGTGCTGAATTGTAGAGCTATGATGCAGCATTTTGACTTTGTCCAGATTAAGCATATTCACAAGGAGAGGAACATGGTGGCTGATTTATTGGCCAAAAACAGCCCTCTTAATGCTAAGGGAATCTGCATTTTCAATGAGCCTCCTGATCTTGTCACTAATGCTCTGCTGGATGACATTGTTGGAGTTACAAGATGTAGGACTGTTAGTATCAGCAGTGCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

497

Amino Acids

56.51

Weight (kDa)

8.44

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 142 - 227 3.4e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 336 - 455 1.1e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 1259
AciI CCGC 1 cut(s) 332
AclWI GGATC 2 cut(s) 983, 1061
AcoI YGGCCR 1 cut(s) 1356
AcsI RAATTY 4 cut(s) 304, 525, 1176, 1231
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 2 cut(s) 409, 619
AfiI CCNNNNNNNGG 1 cut(s) 989
AflIII ACRYGT 1 cut(s) 17
AgeI ACCGGT 1 cut(s) 765
AgsI TTSAA 5 cut(s) 490, 953, 1020, 1157, 1399
AjnI CCWGG 3 cut(s) 162, 200, 651
AleI CACNNNNGTG 1 cut(s) 1265
Alw26I GTCTC 1 cut(s) 550
AlwI GGATC 2 cut(s) 983, 1061
AoxI GGCC 4 cut(s) 93, 1138, 1161, 1356
ApeKI GCWGC 4 cut(s) 556, 905, 1225, 1291
ApoI RAATTY 4 cut(s) 304, 525, 1176, 1231
AsiGI ACCGGT 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 797
AspS9I GGNCC 4 cut(s) 94, 498, 915, 1138
AsuHPI GGTGA 3 cut(s) 290, 1046, 1241
AvaII GGWCC 2 cut(s) 498, 915
BalI TGGCCA 1 cut(s) 1358
BanI GGYRCC 1 cut(s) 1259
BbvI GCAGC 4 cut(s) 543, 892, 1212, 1303
BccI CCATC 4 cut(s) 85, 667, 728, 1007
BciT130I CCWGG 3 cut(s) 164, 202, 653
BciVI GTATCC 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 4 cut(s) 81, 150, 225, 1256
BfmI CTRYAG 2 cut(s) 442, 1226
BfuAI ACCTGC 1 cut(s) 150
BfuI GTATCC 1 cut(s) 879
BglII AGATCT 3 cut(s) 44, 123, 683
BisI GCNGC 5 cut(s) 332, 557, 906, 1226, 1292
BlsI GCNGC 5 cut(s) 333, 558, 907, 1227, 1293
Bme1390I CCNGG 3 cut(s) 164, 202, 653
Bme18I GGWCC 2 cut(s) 498, 915
BmgT120I GGNCC 4 cut(s) 94, 498, 915, 1138
BmiI GGNNCC 4 cut(s) 500, 863, 1139, 1261
BmrFI CCNGG 3 cut(s) 164, 202, 653
BmsI GCATC 4 cut(s) 613, 652, 932, 1278
BoxI GACNNNNGTC 2 cut(s) 542, 768
BpmI CTGGAG 2 cut(s) 532, 1068
Bpu10I CCTNAGC 1 cut(s) 1380
BsaJI CCNNGG 3 cut(s) 97, 482, 918
BsaWI WCCGGW 2 cut(s) 765, 864
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse118I RCCGGY 1 cut(s) 765
Bse1I ACTGG 2 cut(s) 549, 1164
BseBI CCWGG 3 cut(s) 164, 202, 653
BseDI CCNNGG 3 cut(s) 97, 482, 918
BseGI GGATG 4 cut(s) 96, 739, 1249, 1441
BseLI CCNNNNNNNGG 1 cut(s) 989
BseNI ACTGG 2 cut(s) 549, 1164
BseRI GAGGAG 1 cut(s) 869
BseXI GCAGC 4 cut(s) 543, 892, 1212, 1303
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 4 cut(s) 95, 1140, 1163, 1358
BshNI GGYRCC 1 cut(s) 1259
BshTI ACCGGT 1 cut(s) 765
BsiSI CCGG 2 cut(s) 766, 865
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 2 cut(s) 145, 1152
BsnI GGCC 4 cut(s) 95, 1140, 1163, 1358
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
BspACI CCGC 1 cut(s) 332
BspANI GGCC 4 cut(s) 95, 1140, 1163, 1358
BspLI GGNNCC 4 cut(s) 500, 863, 1139, 1261
BspMAI CTGCAG 1 cut(s) 1230
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 2 cut(s) 983, 1061
BspT107I GGYRCC 1 cut(s) 1259
BsrFI RCCGGY 1 cut(s) 765
BsrGI TGTACA 1 cut(s) 617
BsrI ACTGG 2 cut(s) 549, 1164
BssAI RCCGGY 1 cut(s) 765
BssECI CCNNGG 3 cut(s) 97, 482, 918
BssMI GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
BssT1I CCWWGG 3 cut(s) 97, 482, 918
Bst2UI CCWGG 3 cut(s) 164, 202, 653
Bst4CI ACNGT 3 cut(s) 191, 274, 1468
BstAPI GCANNNNNTGC 2 cut(s) 940, 1074
BstAUI TGTACA 1 cut(s) 617
BstC8I GCNNGC 3 cut(s) 72, 740, 1111
BstDEI CTNAG 2 cut(s) 1182, 1380
BstF5I GGATG 4 cut(s) 96, 739, 1249, 1441
BstKTI GATC 6 cut(s) 47, 126, 686, 978, 1056, 1414
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
BstMWI GCNNNNNNNGC 3 cut(s) 71, 940, 1074
BstNI CCWGG 3 cut(s) 164, 202, 653
BstNSI RCATGY 2 cut(s) 21, 269
BstPAI GACNNNNGTC 2 cut(s) 542, 768
BstSCI CCNGG 3 cut(s) 162, 200, 651
BstSFI CTRYAG 2 cut(s) 442, 1226
BstV1I GCAGC 4 cut(s) 543, 892, 1212, 1303
BstX2I RGATCY 3 cut(s) 44, 123, 683
BstYI RGATCY 3 cut(s) 44, 123, 683
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 4 cut(s) 95, 1140, 1163, 1358
BtsCI GGATG 4 cut(s) 96, 739, 1249, 1441
BtsI GCAGTG 2 cut(s) 1075, 1486
BtsIMutI CAGTG 2 cut(s) 1075, 1486
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 72, 740, 1111
Cfr10I RCCGGY 1 cut(s) 765
Cfr13I GGNCC 4 cut(s) 94, 498, 915, 1138
Csp6I GTAC 2 cut(s) 408, 618
CspAI ACCGGT 1 cut(s) 765
CviAII CATG 3 cut(s) 18, 266, 1339
CviQI GTAC 2 cut(s) 408, 618
DdeI CTNAG 2 cut(s) 1182, 1380
DpnI GATC 6 cut(s) 46, 125, 685, 977, 1055, 1413
DpnII GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
EaeI YGGCCR 1 cut(s) 1356
Eco130I CCWWGG 3 cut(s) 97, 482, 918
Eco47I GGWCC 2 cut(s) 498, 915
Eco57I CTGAAG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 1138
EcoRI GAATTC 1 cut(s) 1231
EcoRII CCWGG 3 cut(s) 162, 200, 651
EcoT14I CCWWGG 3 cut(s) 97, 482, 918
ErhI CCWWGG 3 cut(s) 97, 482, 918
FaeI CATG 3 cut(s) 21, 269, 1342
FaqI GGGAC 1 cut(s) 484
FatI CATG 3 cut(s) 17, 265, 1338
Fnu4HI GCNGC 5 cut(s) 332, 557, 906, 1226, 1292
FokI GGATG 4 cut(s) 103, 746, 1256, 1448
Fsp4HI GCNGC 5 cut(s) 332, 557, 906, 1226, 1292
FspBI CTAG 4 cut(s) 81, 150, 225, 1256
GluI GCNGC 5 cut(s) 332, 557, 906, 1226, 1292
GsuI CTGGAG 2 cut(s) 532, 1068
HaeIII GGCC 4 cut(s) 95, 1140, 1163, 1358
HapII CCGG 2 cut(s) 766, 865
Hin1II CATG 3 cut(s) 21, 269, 1342
HindIII AAGCTT 3 cut(s) 518, 963, 1131
HinfI GANTC 4 cut(s) 598, 1196, 1202, 1386
HpaII CCGG 2 cut(s) 766, 865
HphI GGTGA 3 cut(s) 290, 1046, 1241
Hpy166II GTNNAC 3 cut(s) 346, 997, 1249
Hpy188I TCNGA 3 cut(s) 474, 1201, 1237
Hpy188III TCNNGA 3 cut(s) 1020, 1309, 1409
Hpy8I GTNNAC 3 cut(s) 346, 997, 1249
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 3 cut(s) 191, 274, 1468
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 940, 1074
HpyF3I CTNAG 2 cut(s) 1182, 1380
Hsp92II CATG 3 cut(s) 21, 269, 1342
Kzo9I GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 4 cut(s) 543, 892, 1212, 1303
LweI GCATC 4 cut(s) 613, 652, 932, 1278
MaeI CTAG 4 cut(s) 81, 150, 225, 1256
MaeIII GTNAC 4 cut(s) 377, 476, 1417, 1450
MalI GATC 6 cut(s) 46, 125, 685, 977, 1055, 1413
MboI GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
MboII GAAGA 2 cut(s) 502, 793
MflI RGATCY 3 cut(s) 44, 123, 683
MlsI TGGCCA 1 cut(s) 1358
MluNI TGGCCA 1 cut(s) 1358
MmeI TCCRAC 3 cut(s) 65, 1167, 1426
Mox20I TGGCCA 1 cut(s) 1358
MroXI GAANNNNTTC 1 cut(s) 797
MscI TGGCCA 1 cut(s) 1358
MslI CAYNNNNRTG 1 cut(s) 1265
Msp20I TGGCCA 1 cut(s) 1358
MspI CCGG 2 cut(s) 766, 865
MspR9I CCNGG 3 cut(s) 164, 202, 653
Mva1269I GAATGC 2 cut(s) 145, 1152
MvaI CCWGG 3 cut(s) 164, 202, 653
MwoI GCNNNNNNNGC 3 cut(s) 71, 940, 1074
NdeII GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
NlaIII CATG 3 cut(s) 21, 269, 1342
NlaIV GGNNCC 4 cut(s) 500, 863, 1139, 1261
NmuCI GTSAC 2 cut(s) 377, 1417
NspI RCATGY 2 cut(s) 21, 269
OliI CACNNNNGTG 1 cut(s) 1265
PciI ACATGT 1 cut(s) 17
PctI GAATGC 2 cut(s) 145, 1152
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 4 cut(s) 598, 1196, 1202, 1386
PflFI GACNNNGTC 1 cut(s) 1304
PfoI TCCNGGA 2 cut(s) 162, 651
PinAI ACCGGT 1 cut(s) 765
PkrI GCNGC 5 cut(s) 333, 558, 907, 1227, 1293
PscI ACATGT 1 cut(s) 17
PshAI GACNNNNGTC 2 cut(s) 542, 768
Psp6I CCWGG 3 cut(s) 162, 200, 651
PspGI CCWGG 3 cut(s) 162, 200, 651
PspN4I GGNNCC 4 cut(s) 500, 863, 1139, 1261
PspPI GGNCC 4 cut(s) 94, 498, 915, 1138
PstI CTGCAG 1 cut(s) 1230
PsuI RGATCY 3 cut(s) 44, 123, 683
PsyI GACNNNGTC 1 cut(s) 1304
RsaI GTAC 2 cut(s) 409, 619
RsaNI GTAC 2 cut(s) 408, 618
RseI CAYNNNNRTG 1 cut(s) 1265
SatI GCNGC 5 cut(s) 332, 557, 906, 1226, 1292
Sau3AI GATC 6 cut(s) 44, 123, 683, 975, 1053, 1411
Sau96I GGNCC 4 cut(s) 94, 498, 915, 1138
ScrFI CCNGG 3 cut(s) 164, 202, 653
SfaNI GCATC 4 cut(s) 613, 652, 932, 1278
SfcI CTRYAG 2 cut(s) 442, 1226
SinI GGWCC 2 cut(s) 498, 915
SmiMI CAYNNNNRTG 1 cut(s) 1265
SsiI CCGC 1 cut(s) 332
SspI AATATT 4 cut(s) 256, 508, 796, 1102
SspMI CTAG 4 cut(s) 81, 150, 225, 1256
StyD4I CCNGG 3 cut(s) 162, 200, 651
StyI CCWWGG 3 cut(s) 97, 482, 918
TaaI ACNGT 3 cut(s) 191, 274, 1468
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 4 cut(s) 598, 1196, 1202, 1386
TscAI CASTG 2 cut(s) 1075, 1486
TseFI GTSAC 2 cut(s) 377, 1417
TseI GCWGC 4 cut(s) 556, 905, 1225, 1291
Tsp45I GTSAC 2 cut(s) 377, 1417
TspDTI ATGAA 4 cut(s) 71, 793, 800, 1187
TspRI CASTG 2 cut(s) 1075, 1486
Tth111I GACNNNGTC 1 cut(s) 1304
VpaK11BI GGWCC 2 cut(s) 498, 915
XapI RAATTY 4 cut(s) 304, 525, 1176, 1231
XceI RCATGY 2 cut(s) 21, 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 4 cut(s) 81, 150, 225, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.