Rorug02G0259000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000254
Physical Location & Seq
Reverse (-)
27243109 .. 27245137
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0259000.1

Sequence Viewer

Length: 417 bp
ATGTCCGGCGAAGAGGAAGAGAACGCCGCCGAGCTCAAAATCGGAGACGAGTTTCTCAAGGCAAAGTGTTTGATGAACTGCGAAGTTTCTCTGATTCTCGAGCACAAGTTCGAGCAGCTTCAGCAGATGTCTGATGATCCCAGGAACCAAGTCTCTCAAGTGTTTGAGAAGTCTCTGCAGTATGTGAAGCGCTTTAGCCGCTATAAGAATCCTGATGCTGTGAAGCAAGTGAGAGAAATCCTCAGTAGATATCAGTTGACTGAGTTTGAGCTTTGTGTGCTTGGCAATCTCTGCCCTGAAACTGTCGAGGAGGCTATTGCTATGGTACCATCTATAAAGGCAAAAGGACGTGTGCATGATGATGAGGCAATTGATAAAATGTTGAATGACCTGGCACTAATCAAGAAATTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

15.93

Weight (kDa)

4.99

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb4 PF03874 23 - 132 9.1e-28 RNA polymerase Rpb4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 2 cut(s) 27, 199
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 327
AfeI AGCGCT 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 1 cut(s) 385
AjiI CACGTC 1 cut(s) 350
AjnI CCWGG 2 cut(s) 140, 390
AluBI AGCT 3 cut(s) 34, 118, 271
AluI AGCT 3 cut(s) 34, 118, 271
Alw21I GWGCWC 2 cut(s) 36, 105
Alw26I GTCTC 3 cut(s) 39, 157, 177
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 407
Asp718I GGTACC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 98
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 36, 105
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 142, 392
BcoDI GTCTC 3 cut(s) 39, 157, 177
BfmI CTRYAG 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 3 cut(s) 27, 116, 199
BlsI GCNGC 3 cut(s) 28, 117, 200
Bme1390I CCNGG 2 cut(s) 142, 392
BmeT110I CYCGRG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 146, 327
BmrFI CCNGG 2 cut(s) 142, 392
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpuEI CTTGAG 2 cut(s) 41, 141
BsaJI CCNNGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 142, 392
BseDI CCNNGG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 252, 256
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 127
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 36, 105
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 6
BsmAI GTCTC 3 cut(s) 39, 157, 177
BsmBI CGTCTC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 36, 105
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 2 cut(s) 27, 199
BspCNI CTCAG 2 cut(s) 253, 255
BspLI GGNNCC 2 cut(s) 146, 327
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 136
Bst2UI CCWGG 2 cut(s) 142, 392
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 6, 12
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 242, 261
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 3 cut(s) 39, 157, 177
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 4 cut(s) 121, 198, 277, 291
BstNI CCWGG 2 cut(s) 142, 392
BstSCI CCNGG 2 cut(s) 140, 390
BstSFI CTRYAG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 127
BtrI CACGTC 1 cut(s) 350
CfoI GCGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 326
CviAII CATG 1 cut(s) 356
CviJI RGCY 5 cut(s) 34, 118, 198, 271, 314
CviKI_1 RGCY 5 cut(s) 34, 118, 198, 271, 314
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 2 cut(s) 242, 261
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 2 cut(s) 6, 12
EarI CTCTTC 2 cut(s) 6, 12
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco32I GATATC 1 cut(s) 251
Eco47III AGCGCT 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 140, 390
EcoRV GATATC 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 1 cut(s) 359
FaiI YATR 5 cut(s) 183, 204, 323, 335, 357
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 27, 116, 199
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 27, 116, 199
GlaI GCGC 1 cut(s) 191
GluI GCNGC 3 cut(s) 27, 116, 199
HaeII RGCGCY 1 cut(s) 193
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 2 cut(s) 94, 208
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 44, 93, 133
Hpy188III TCNNGA 3 cut(s) 98, 212, 403
Hpy8I GTNNAC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 2 cut(s) 178, 355
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 198, 277, 291
HpyF3I CTNAG 2 cut(s) 242, 261
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 1 cut(s) 190
KpnI GGTACC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 19, 127, 154, 225, 309, 377, 404
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 205
MaeII ACGT 1 cut(s) 349
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 23, 29
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 36, 105
MluCI AATT 2 cut(s) 369, 407
MnlI CCTC 5 cut(s) 7, 251, 301, 304, 358
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 2 cut(s) 142, 392
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 2 cut(s) 142, 392
MwoI GCNNNNNNNGC 4 cut(s) 121, 198, 277, 291
NdeII GATC 1 cut(s) 136
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 2 cut(s) 146, 327
NmeAIII GCCGAG 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 98
PfeI GAWTC 2 cut(s) 94, 208
PkrI GCNGC 3 cut(s) 28, 117, 200
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 140, 390
PspGI CCWGG 2 cut(s) 140, 390
PspN4I GGNNCC 2 cut(s) 146, 327
PstI CTGCAG 1 cut(s) 180
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 1 cut(s) 36
SatI GCNGC 3 cut(s) 27, 116, 199
Sau3AI GATC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 142, 392
SduI GDGCHC 2 cut(s) 36, 105
SetI ASST 5 cut(s) 36, 120, 273, 352, 393
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 176
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 3 cut(s) 56, 98, 156
SmoI CTYRAG 3 cut(s) 56, 98, 156
Sse9I AATT 2 cut(s) 369, 407
SsiI CCGC 2 cut(s) 27, 199
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 140, 390
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 99, 111, 306
TasI AATT 2 cut(s) 369, 407
TauI GCSGC 2 cut(s) 29, 201
TfiI GAWTC 2 cut(s) 94, 208
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 89
XapI RAATTY 1 cut(s) 407
XhoI CTCGAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.