RchiOBHm_Chr7g0200931

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000254
Physical Location & Seq
Reverse (-)
18612671 .. 18613540
870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17987

Sequence Viewer

Length: 780 bp
ATGAGTTGGGAAGGTTGGTTACAGGCGAATCTTTTCTGCAAAGCCAAATGTAATGCTGGAAATCTTTGGTGTTCTACCTTTGTTTTCATATGCTGGCTTATCTGGAAATGGAGGAACAATCATATTTTTGAGTCTCACTTTCGAAAACCAAATTATCCAGGTATGGTCATTAGTGCTGCTATCTCTGAATGGAACAATGCTCAGTTGAAATCTGACTTGAACAGAACTTATTGTCTTAAGCTTCTGAATTGGATGAAACCCCCTCATGGAACCTATAAATTAAACATTGATGGAAGTAGAAATGGACATTCTGGAAAAATTGGTGCTGGAGGGGTTATCAGATGTTCTAATGGATTATGGATCAAGGGTTTTCAGATAAACTTGGGCATAGGCGAAGTTTTAGATGCTGAATCTTGGGGCCTATATTATGGTCTCCAACAAGCTCTTAAATGTCACATTACTCATGTTGAAGTAGAAACGGACTCTGCAATTCTGGCAAAGTTGATCTCTCATACTGATGTCACTCTTCATCCCATGGGCTCCCTTATTTGTTGCTGCAAAAATTTGATCAGAAACTTCCTTTGCTTCTCCCTAAAGCACATTTACAGAGAAAGTAATATGGTAGCAGACTGCCTTGCTAAGGAGAGCATCAATCATGATTATGGGATAATTGAGTTTGATAGCCCTCCCACTCATGCCTCTTCTGCTTACCTTGATGATCTTGATGGTGCAACCCGTCAAAGAAGAATCTCTGTTAGGCATGATGATAGGCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

259

Amino Acids

29.4

Weight (kDa)

8.42

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 95 - 215 1.6e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 562
AfiI CCNNNNNNNGG 2 cut(s) 266, 640
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 208, 220, 470
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 3 cut(s) 241, 443, 777
AluI AGCT 3 cut(s) 241, 443, 777
Alw26I GTCTC 2 cut(s) 138, 437
AlwI GGATC 1 cut(s) 368
AoxI GGCC 2 cut(s) 418, 770
ApeKI GCWGC 2 cut(s) 176, 555
ApoI RAATTY 1 cut(s) 562
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 142
BanII GRGCYC 1 cut(s) 542
BarI GAAGNNNNNNTAC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 163, 542
BccI CCATC 2 cut(s) 284, 719
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 567
BcoDI GTCTC 2 cut(s) 138, 437
BfaI CTAG 1 cut(s) 778
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 2 cut(s) 177, 556
BlsI GCNGC 2 cut(s) 178, 557
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 3 cut(s) 271, 419, 541
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 2 cut(s) 394, 657
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 640
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 258, 529
BseLI CCNNNNNNNGG 2 cut(s) 266, 640
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 163, 542
BshFI GGCC 2 cut(s) 420, 772
BslI CCNNNNNNNGG 2 cut(s) 266, 640
BsmAI GTCTC 2 cut(s) 138, 437
BsnI GGCC 2 cut(s) 420, 772
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 4 cut(s) 360, 504, 567, 718
Bsp19I CCATGG 1 cut(s) 534
BspANI GGCC 2 cut(s) 420, 772
BspCNI CTCAG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 3 cut(s) 271, 419, 541
BspPI GGATC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 4 cut(s) 360, 504, 567, 718
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 531, 706
BstAFI CTTAAG 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 201, 639
BstDSI CCRYGG 1 cut(s) 534
BstENI CCTNNNNNAGG 1 cut(s) 638
BstF5I GGATG 2 cut(s) 258, 529
BstKTI GATC 4 cut(s) 363, 507, 570, 721
BstMAI GTCTC 2 cut(s) 138, 437
BstMBI GATC 4 cut(s) 360, 504, 567, 718
BstMWI GCNNNNNNNGC 2 cut(s) 494, 704
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 163, 542
BsuRI GGCC 2 cut(s) 420, 772
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 258, 529
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 418
CviAII CATG 6 cut(s) 266, 464, 535, 656, 695, 761
CviJI RGCY 9 cut(s) 44, 97, 241, 420, 443, 540, 684, 772, 777
CviKI_1 RGCY 9 cut(s) 44, 97, 241, 420, 443, 540, 684, 772, 777
DdeI CTNAG 2 cut(s) 201, 639
DpnI GATC 4 cut(s) 362, 506, 569, 720
DpnII GATC 4 cut(s) 360, 504, 567, 718
Eam1104I CTCTTC 2 cut(s) 531, 706
EarI CTCTTC 2 cut(s) 531, 706
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 6 cut(s) 269, 467, 538, 659, 698, 764
FatI CATG 6 cut(s) 265, 463, 534, 655, 694, 760
FauNDI CATATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 2 cut(s) 177, 556
FokI GGATG 2 cut(s) 265, 516
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 177, 556
FspBI CTAG 1 cut(s) 778
GluI GCNGC 2 cut(s) 177, 556
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 2 cut(s) 420, 772
Hin1II CATG 6 cut(s) 269, 467, 538, 659, 698, 764
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 5 cut(s) 28, 131, 410, 482, 747
Hpy188I TCNGA 6 cut(s) 187, 214, 246, 341, 375, 572
Hpy188III TCNNGA 4 cut(s) 103, 312, 656, 722
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 4 cut(s) 39, 488, 558, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 704
HpyF3I CTNAG 2 cut(s) 201, 639
Hsp92II CATG 6 cut(s) 269, 467, 538, 659, 698, 764
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 4 cut(s) 360, 504, 567, 718
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 9 cut(s) 8, 42, 79, 88, 144, 171, 297, 312, 479
Lsp1109I GCAGC 2 cut(s) 163, 542
LweI GCATC 2 cut(s) 394, 657
MaeI CTAG 1 cut(s) 778
MaeIII GTNAC 3 cut(s) 18, 452, 520
MalI GATC 4 cut(s) 362, 506, 569, 720
MboI GATC 4 cut(s) 360, 504, 567, 718
MboII GAAGA 3 cut(s) 518, 693, 756
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 7 cut(s) 151, 247, 278, 318, 489, 562, 669
MlyI GAGTC 2 cut(s) 140, 476
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 5 cut(s) 105, 273, 323, 696, 709
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 3 cut(s) 237, 281, 447
MslI CAYNNNNRTG 2 cut(s) 516, 660
MspCI CTTAAG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 494, 704
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 89
NdeII GATC 4 cut(s) 360, 504, 567, 718
NlaIII CATG 6 cut(s) 269, 467, 538, 659, 698, 764
NlaIV GGNNCC 3 cut(s) 271, 419, 541
NmuCI GTSAC 2 cut(s) 452, 520
NspV TTCGAA 1 cut(s) 142
PagI TCATGA 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 3 cut(s) 28, 410, 747
PkrI GCNGC 2 cut(s) 178, 557
PleI GAGTC 2 cut(s) 139, 476
PpsI GAGTC 2 cut(s) 139, 476
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 271, 419, 541
PspPI GGNCC 1 cut(s) 418
RseI CAYNNNNRTG 2 cut(s) 516, 660
SaqAI TTAA 3 cut(s) 237, 281, 447
SatI GCNGC 2 cut(s) 177, 556
Sau3AI GATC 4 cut(s) 360, 504, 567, 718
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 2 cut(s) 140, 476
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 542
SetI ASST 8 cut(s) 16, 80, 163, 243, 275, 445, 714, 779
SfaNI GCATC 2 cut(s) 394, 657
SfuI TTCGAA 1 cut(s) 142
SmiMI CAYNNNNRTG 2 cut(s) 516, 660
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 7 cut(s) 151, 247, 278, 318, 489, 562, 669
SspMI CTAG 1 cut(s) 778
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 534
TaqI TCGA 1 cut(s) 142
TasI AATT 7 cut(s) 151, 247, 278, 318, 489, 562, 669
TfiI GAWTC 3 cut(s) 28, 410, 747
Tru1I TTAA 3 cut(s) 237, 281, 447
Tru9I TTAA 3 cut(s) 237, 281, 447
TseFI GTSAC 2 cut(s) 452, 520
TseI GCWGC 2 cut(s) 176, 555
Tsp45I GTSAC 2 cut(s) 452, 520
TspDTI ATGAA 3 cut(s) 76, 269, 518
TspGWI ACGGA 1 cut(s) 494
Vha464I CTTAAG 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 638
XapI RAATTY 1 cut(s) 562
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.