RchiOBHm_Chr4g0426941

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000254
Physical Location & Seq
Forward (+)
52244122 .. 52244860
739 bp
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UTR
Exon/CDS
Intron
PRQ39591

Sequence Viewer

Length: 435 bp
ATGGACTGGAATGAATTATTCATCATTGTTTGCTGGCACATTTGGAAGTGGAGGAACAAAGGCATCTTTGAGGCTAATTTCACCTTCCCTCATAATCCTAAAGAGATTATTTTTCAGTATGCTACTGAAATCTCCAATGCTTCCAAGCCTAGCATTGATAATAGGCCTCATCAGATTGTTACCCTTCATTGGGAGAAACCAGCTAGAAACAACTTCAAATTGAACGTTGATGGGTCCAGATCTTATGCAGGAGTGATTGGCGCTGGGGGCCTCATTAGGAATAGCTCTGGTGTTTGGATTAAAGGTTTCTCCCACAGTATGGGAGTTGGCGAAATCGTCGAGGCTGAAGCCTGGGGTCTTTTTATTGGTTTAAAGCTTGCCTTTGGTCTCCATATTAAAGACTGGAAGTTGAAAGTGATTCAGCCATTGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.53

Weight (kDa)

9.34

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 75 - 134 2e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 319
AclI AACGTT 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 366
AfiI CCNNNNNNNGG 3 cut(s) 189, 190, 319
AgsI TTSAA 3 cut(s) 217, 223, 412
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 3 cut(s) 203, 285, 376
AluI AGCT 3 cut(s) 203, 285, 376
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 2 cut(s) 164, 268
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 234, 268
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 234
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 2 cut(s) 150, 204
BfoI RGCGCY 1 cut(s) 264
BglII AGATCT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 2 cut(s) 234, 268
BmiI GGNNCC 2 cut(s) 235, 269
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 190, 319
Bse1I ACTGG 2 cut(s) 11, 407
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 189, 190, 319
BseNI ACTGG 2 cut(s) 11, 407
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 166, 270
BslI CCNNNNNNNGG 3 cut(s) 189, 190, 319
BsmAI GTCTC 1 cut(s) 392
BsnI GGCC 2 cut(s) 166, 270
Bso31I GGTCTC 1 cut(s) 392
Bsp143I GATC 1 cut(s) 239
BspANI GGCC 2 cut(s) 166, 270
BspLI GGNNCC 2 cut(s) 235, 269
BspTNI GGTCTC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 11, 407
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 35, 378
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 1 cut(s) 242
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 352
BstSCI CCNGG 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 166, 270
Cac8I GCNNGC 2 cut(s) 35, 378
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 234, 268
DpnI GATC 1 cut(s) 241
DpnII GATC 1 cut(s) 239
DraI TTTAAA 1 cut(s) 372
Eco147I AGGCCT 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 350
FaiI YATR 5 cut(s) 93, 120, 246, 320, 393
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FspBI CTAG 2 cut(s) 150, 204
GlaI GCGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 2 cut(s) 166, 270
HhaI GCGC 1 cut(s) 263
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 418
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 94, 194
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 225
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 1 cut(s) 239
LpnPI CCDG 9 cut(s) 19, 213, 234, 249, 250, 273, 337, 364, 388
LweI GCATC 1 cut(s) 72
MaeI CTAG 2 cut(s) 150, 204
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 241
MboI GATC 1 cut(s) 239
MflI RGATCY 1 cut(s) 239
MluCI AATT 3 cut(s) 14, 76, 218
MnlI CCTC 6 cut(s) 45, 64, 99, 177, 281, 334
MseI TTAA 3 cut(s) 300, 371, 396
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 235, 269
PceI AGGCCT 1 cut(s) 166
PfeI GAWTC 1 cut(s) 418
PflMI CCANNNNNTGG 1 cut(s) 319
Psp1406I AACGTT 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 235, 269
PspPI GGNCC 2 cut(s) 234, 268
PsuI RGATCY 1 cut(s) 239
SaqAI TTAA 3 cut(s) 300, 371, 396
Sau3AI GATC 1 cut(s) 239
Sau96I GGNCC 2 cut(s) 234, 268
ScrFI CCNGG 1 cut(s) 352
SetI ASST 6 cut(s) 86, 205, 228, 287, 307, 378
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 1 cut(s) 234
Sse9I AATT 3 cut(s) 14, 76, 218
SseBI AGGCCT 1 cut(s) 166
SspMI CTAG 2 cut(s) 150, 204
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 339
TasI AATT 3 cut(s) 14, 76, 218
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 300, 371, 396
Tru9I TTAA 3 cut(s) 300, 371, 396
TspDTI ATGAA 3 cut(s) 10, 27, 176
Van91I CCANNNNNTGG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 234
XspI CTAG 2 cut(s) 150, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.