FvH4_3g36953

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000254
Physical Location & Seq
Forward (+)
31659478 .. 31659936
459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36953.t1

Sequence Viewer

Length: 459 bp
ATGATTGGAGCTGGTGGTGTTATTAGAAACCATTATGGTGCTTGGATTACTGGCTTTCAAATTAATCTTAGGGTTGGTGCCATTCTTGATGCTGAGGCATGGGGCATGTTTCATGGTTTAAAGTTGGCTTTTAATCTGCACATTTCAAAGCTTGAGATTGAATTTGACTCTGCTATCCTTATGGATCTTATGAAAAGTGTCAATCTCTCTCTCCATCCGCTGGGATCTCTTCTCAATGGTTGCAAAAGCATGATGTCCCAAATGGATGATGTGAAGCCCTCTCATGTGTTCAGAGAGTCCAACATGACAGCTGATGCCCTACTAGCAAAGTGCAGCATCTCCAATGATCTTGGTCTCATTCTTTTTGAAGAACCTCTAGTTCATGTCATTCCAGTTTTTCTTGATGATTTAGCTGCTGTTACTAGAGCTAGGAGAACATGCTCTCGTTTTAGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

153

Amino Acids

16.74

Weight (kDa)

6.27

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 109 1.2e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 192, 232
AcsI RAATTY 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 4 cut(s) 59, 147, 161, 368
AluBI AGCT 5 cut(s) 11, 151, 311, 413, 428
AluI AGCT 5 cut(s) 11, 151, 311, 413, 428
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 192, 232
ApeKI GCWGC 2 cut(s) 333, 413
ApoI RAATTY 1 cut(s) 161
AseI ATTAAT 1 cut(s) 63
BanI GGYRCC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 345, 400
BccI CCATC 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 4 cut(s) 323, 377, 423, 429
BisI GCNGC 2 cut(s) 334, 414
BlsI GCNGC 2 cut(s) 335, 415
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 3 cut(s) 79, 304, 345
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 55, 392
BseGI GGATG 2 cut(s) 214, 271
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 55, 392
BseXI GCAGC 2 cut(s) 345, 400
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 2 cut(s) 122, 352
BshNI GGYRCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 359
Bsp143I GATC 3 cut(s) 184, 224, 346
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 2 cut(s) 192, 232
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 55, 392
BssMI GATC 3 cut(s) 184, 224, 346
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 68, 93
BstF5I GGATG 2 cut(s) 214, 271
BstKTI GATC 3 cut(s) 187, 227, 349
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 184, 224, 346
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 109, 441
BstV1I GCAGC 2 cut(s) 345, 400
BstX2I RGATCY 2 cut(s) 184, 224
BstYI RGATCY 2 cut(s) 184, 224
BtsCI GGATG 2 cut(s) 214, 271
CviAII CATG 8 cut(s) 99, 106, 113, 250, 284, 304, 383, 438
CviJI RGCY 8 cut(s) 11, 54, 128, 151, 277, 311, 413, 428
CviKI_1 RGCY 8 cut(s) 11, 54, 128, 151, 277, 311, 413, 428
DdeI CTNAG 2 cut(s) 68, 93
DpnI GATC 3 cut(s) 186, 226, 348
DpnII GATC 3 cut(s) 184, 224, 346
DraI TTTAAA 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 359
FaeI CATG 8 cut(s) 102, 109, 116, 253, 287, 307, 386, 441
FaqI GGGAC 1 cut(s) 241
FatI CATG 8 cut(s) 98, 105, 112, 249, 283, 303, 382, 437
Fnu4HI GCNGC 2 cut(s) 334, 414
FokI GGATG 2 cut(s) 201, 278
Fsp4HI GCNGC 2 cut(s) 334, 414
FspBI CTAG 4 cut(s) 323, 377, 423, 429
GluI GCNGC 2 cut(s) 334, 414
GsaI CCCAGC 1 cut(s) 224
Hin1II CATG 8 cut(s) 102, 109, 116, 253, 287, 307, 386, 441
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 167, 296
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 2 cut(s) 86, 401
HpyCH4V TGCA 3 cut(s) 139, 243, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 68, 93
Hsp92II CATG 8 cut(s) 102, 109, 116, 253, 287, 307, 386, 441
Kzo9I GATC 3 cut(s) 184, 224, 346
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 36, 206, 405
Lsp1109I GCAGC 2 cut(s) 345, 400
LweI GCATC 3 cut(s) 79, 304, 345
MaeI CTAG 4 cut(s) 323, 377, 423, 429
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 186, 226, 348
MboI GATC 3 cut(s) 184, 224, 346
MboII GAAGA 2 cut(s) 221, 380
MflI RGATCY 2 cut(s) 184, 224
MluCI AATT 2 cut(s) 60, 161
MlyI GAGTC 2 cut(s) 161, 305
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 3 cut(s) 88, 289, 384
MseI TTAA 3 cut(s) 63, 119, 132
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 220, 311
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 3 cut(s) 184, 224, 346
NlaIII CATG 8 cut(s) 102, 109, 116, 253, 287, 307, 386, 441
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 2 cut(s) 109, 441
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 2 cut(s) 335, 415
PleI GAGTC 2 cut(s) 161, 304
PpsI GAGTC 2 cut(s) 161, 304
PshBI ATTAAT 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 79
PsuI RGATCY 2 cut(s) 184, 224
PvuII CAGCTG 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 3 cut(s) 63, 119, 132
SatI GCNGC 2 cut(s) 334, 414
Sau3AI GATC 3 cut(s) 184, 224, 346
SchI GAGTC 2 cut(s) 161, 305
SetI ASST 6 cut(s) 13, 153, 313, 376, 415, 430
SfaNI GCATC 3 cut(s) 79, 304, 345
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 2 cut(s) 60, 161
SsiI CCGC 1 cut(s) 218
SspMI CTAG 4 cut(s) 323, 377, 423, 429
TasI AATT 2 cut(s) 60, 161
Tru1I TTAA 3 cut(s) 63, 119, 132
Tru9I TTAA 3 cut(s) 63, 119, 132
TseI GCWGC 2 cut(s) 333, 413
TspDTI ATGAA 3 cut(s) 101, 206, 371
Van91I CCANNNNNTGG 1 cut(s) 220
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 1 cut(s) 161
XceI RCATGY 2 cut(s) 109, 441
XspI CTAG 4 cut(s) 323, 377, 423, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.