Rorug02G0142900
ERF Family

Major facilitator superfamily domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000254
Physical Location & Seq
Forward (+)
12560106 .. 12562412
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0142900.1

Sequence Viewer

Length: 651 bp
ATGCTGAAAAGGGTAAGCTCAGAGAATCAAAAACAACTGTGGAGGAGAAAGATGTCGTTTCAGATAATCTTGGGCTCGGCGTCAATGGCACGCCGGCAAATACTGGCGGAGATGGGCTACGAGTTCAAAATCATGACTGCAGATATAGACGAGAAGAGTATCAGGATGGATAAGCCAGAGGAGTTGGTGATGGTTCTAGCTGAGGCAAAAGCAGATGCTATCATTTCAAGGATGCAAAGTAGTGAATTGGATGTTGGTGCTGATCAAACAACATTGTTGATTACTGCAGATACAGTGGTGGTGTATGAAGGGATAATAAGGGAAAAACCGTCCAGCAAGGAAGAAGCATGGGATTTTATCAAAGGCTATTCTGGTGGTCAAGCAGGAGTTATAGGATCTGTACTTGTGACCAACCTTAAAACAGGAAAAAGAAAAGGGGGGTGGCGCAGCGCAGAGGTCTATTTTCACGTCATACCAGAGGAGATTATTGACAACCTGATAGAGGAGGGAACTACACTCAACGTTGCTGGGGGTCTGATGCTTGAACATCCTATGATATCACCCTTTGTAGAAGCAGTGATAGGGACAAGTGACACGGTAATGGGACTGCCTAAAGAACTCACAGAAAAGCTCATCCATGAAGCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_5

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

5.15

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 21 - 214 1.1e-42 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AclI AACGTT 1 cut(s) 522
AclWI GGATC 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 502
AgsI TTSAA 3 cut(s) 127, 228, 545
AjiI CACGTC 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 18, 200, 631
AluI AGCT 3 cut(s) 18, 200, 631
AlwI GGATC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 447
AspLEI GCGC 2 cut(s) 447, 452
AsuHPI GGTGA 2 cut(s) 199, 552
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BanII GRGCYC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 459
BccI CCATC 3 cut(s) 106, 160, 184
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 138, 285
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
BmgBI CACGTC 1 cut(s) 469
BmsI GCATC 3 cut(s) 205, 222, 528
Bpu10I CCTNAGC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 108
BseGI GGATG 5 cut(s) 171, 237, 256, 547, 633
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 33, 192
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 4 cut(s) 58, 194, 494, 518
BseXI GCAGC 1 cut(s) 459
BseYI CCCAGC 1 cut(s) 527
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 2 cut(s) 598, 618
BslI CCNNNNNNNGG 1 cut(s) 502
BsmFI GGGAC 2 cut(s) 598, 618
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 262, 395
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 32, 193
BspHI TCATGA 1 cut(s) 132
BspMAI CTGCAG 2 cut(s) 142, 289
BspPI GGATC 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 2 cut(s) 262, 395
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 4 cut(s) 39, 295, 330, 598
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 91, 95
BstDEI CTNAG 2 cut(s) 19, 201
BstENI CCTNNNNNAGG 1 cut(s) 500
BstF5I GGATG 5 cut(s) 171, 237, 256, 547, 633
BstHHI GCGC 2 cut(s) 447, 452
BstKTI GATC 2 cut(s) 265, 398
BstMBI GATC 2 cut(s) 262, 395
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 2 cut(s) 138, 285
BstV1I GCAGC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 5 cut(s) 171, 237, 256, 547, 633
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 300, 582
Cac8I GCNNGC 2 cut(s) 91, 95
CciI TCATGA 1 cut(s) 132
CfoI GCGC 2 cut(s) 447, 452
Cfr10I RCCGGY 1 cut(s) 93
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 133, 348, 638
CviJI RGCY 7 cut(s) 18, 75, 117, 175, 200, 366, 631
CviKI_1 RGCY 7 cut(s) 18, 75, 117, 175, 200, 366, 631
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 19, 201
DpnI GATC 2 cut(s) 264, 397
DpnII GATC 2 cut(s) 262, 395
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 500
EcoRV GATATC 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 3 cut(s) 136, 351, 641
FaiI YATR 8 cut(s) 134, 146, 306, 349, 392, 473, 554, 639
FaqI GGGAC 2 cut(s) 598, 618
FatI CATG 3 cut(s) 132, 347, 637
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 5 cut(s) 178, 244, 263, 534, 620
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 448
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 446, 451
GluI GCNGC 1 cut(s) 448
GsaI CCCAGC 1 cut(s) 531
HapII CCGG 1 cut(s) 94
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 447, 452
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 136, 351, 641
Hin6I GCGC 2 cut(s) 445, 450
HinP1I GCGC 2 cut(s) 445, 450
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 199, 552
Hpy188I TCNGA 3 cut(s) 22, 63, 537
Hpy188III TCNNGA 2 cut(s) 133, 163
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 4 cut(s) 39, 295, 330, 598
HpyCH4IV ACGT 2 cut(s) 468, 522
HpyCH4V TGCA 3 cut(s) 140, 235, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 19, 201
HpySE526I ACGT 2 cut(s) 468, 522
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 136, 351, 641
HspAI GCGC 2 cut(s) 445, 450
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 262, 395
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 3 cut(s) 205, 222, 528
MaeI CTAG 1 cut(s) 197
MaeII ACGT 2 cut(s) 468, 522
MaeIII GTNAC 2 cut(s) 406, 590
MalI GATC 2 cut(s) 264, 397
MboI GATC 2 cut(s) 262, 395
MboII GAAGA 2 cut(s) 166, 353
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 1 cut(s) 245
MnlI CCTC 7 cut(s) 36, 172, 196, 448, 472, 496, 499
MroNI GCCGGC 1 cut(s) 93
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 599
MspI CCGG 1 cut(s) 94
MteI GCGCNGCGC 1 cut(s) 448
MwoI GCNNNNNNNGC 1 cut(s) 86
NaeI GCCGGC 1 cut(s) 95
NdeII GATC 2 cut(s) 262, 395
NgoMIV GCCGGC 1 cut(s) 93
NlaIII CATG 3 cut(s) 136, 351, 641
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 406, 590
PagI TCATGA 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 449
Psp1406I AACGTT 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 527
PstI CTGCAG 2 cut(s) 142, 289
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 599
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 1 cut(s) 448
Sau3AI GATC 2 cut(s) 262, 395
SduI GDGCHC 1 cut(s) 77
SetI ASST 8 cut(s) 20, 202, 417, 459, 471, 498, 525, 633
SfaNI GCATC 3 cut(s) 205, 222, 528
SfcI CTRYAG 2 cut(s) 138, 285
SmiMI CAYNNNNRTG 1 cut(s) 599
Sse9I AATT 1 cut(s) 245
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 4 cut(s) 39, 295, 330, 598
TaiI ACGT 2 cut(s) 471, 525
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 300, 582
TseFI GTSAC 2 cut(s) 406, 590
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 2 cut(s) 406, 590
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 2 cut(s) 300, 582
XagI CCTNNNNNAGG 1 cut(s) 500
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.