FvH4_4g10141

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000254
Physical Location & Seq
Reverse (-)
13159611 .. 13159943
333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10141.t1

Sequence Viewer

Length: 333 bp
ATGGTGTTTAAGCATTCAATTGTCAACTCAGGGATTGAATCAGATTCTGCTATTCTGGTTCAGCTTATGCAAAAGTCTGAGAATATTGTTCATCCCTTGAGATCCTTACTTGATGGTTATGTTATGATGATGTCAAATCTGCAGAATGCCAAGCTTAGTCATATTTTCAGAGAGTGCAACATGGTGGCAGGTGTCTTGGCCAAGGATAGCATCAACCATGATCCTGGTTTAATTACTTTTGTTGAAGCTCCTGTTCATACTGCTCAAGCAATTTTGGATGACCTTACTGGTGTCACAAGAGCTAGAAGGACTGGTTTATGTTCCAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

111

Amino Acids

12.01

Weight (kDa)

6.49

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 3 - 69 6.3e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 96, 215
AcoI YGGCCR 1 cut(s) 198
AgsI TTSAA 3 cut(s) 18, 38, 245
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 4 cut(s) 64, 154, 248, 302
AluI AGCT 4 cut(s) 64, 154, 248, 302
AlwI GGATC 2 cut(s) 96, 215
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 200
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 225
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 118, 249
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 292, 316, 324
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 91, 283
BseMII CTCAG 2 cut(s) 42, 69
BseNI ACTGG 3 cut(s) 292, 316, 324
BshFI GGCC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 13, 151
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 101, 220
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 41, 70
BspMAI CTGCAG 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 96, 215
BsrI ACTGG 3 cut(s) 292, 316, 324
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 101, 220
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 225
BstDEI CTNAG 4 cut(s) 28, 78, 155, 330
BstF5I GGATG 2 cut(s) 91, 283
BstKTI GATC 2 cut(s) 104, 223
BstMBI GATC 2 cut(s) 101, 220
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 224
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 2 cut(s) 91, 283
BveI ACCTGC 1 cut(s) 179
CaiI CAGNNNCTG 1 cut(s) 47
CviAII CATG 2 cut(s) 181, 218
CviJI RGCY 5 cut(s) 64, 154, 200, 248, 302
CviKI_1 RGCY 5 cut(s) 64, 154, 200, 248, 302
DdeI CTNAG 4 cut(s) 28, 78, 155, 330
DpnI GATC 2 cut(s) 103, 222
DpnII GATC 2 cut(s) 101, 220
EaeI YGGCCR 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 184, 221
FaiI YATR 8 cut(s) 68, 120, 125, 162, 182, 219, 258, 319
FatI CATG 2 cut(s) 180, 217
FokI GGATG 2 cut(s) 78, 290
FspBI CTAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 2 cut(s) 184, 221
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 2 cut(s) 38, 44
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 43, 79, 170
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 70, 142, 177
HpyF3I CTNAG 4 cut(s) 28, 78, 155, 330
Hsp92II CATG 2 cut(s) 184, 221
Kzo9I GATC 2 cut(s) 101, 220
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 15, 41, 174, 210, 237, 264, 273, 297
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 103, 222
MboI GATC 2 cut(s) 101, 220
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 3 cut(s) 18, 231, 270
MluNI TGGCCA 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 2 cut(s) 9, 230
Msp20I TGGCCA 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 2 cut(s) 13, 151
MvaI CCWGG 1 cut(s) 225
NdeII GATC 2 cut(s) 101, 220
NlaIII CATG 2 cut(s) 184, 221
NmuCI GTSAC 1 cut(s) 292
PaqCI CACCTGC 1 cut(s) 179
PctI GAATGC 2 cut(s) 13, 151
PfeI GAWTC 2 cut(s) 38, 44
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 101
SaqAI TTAA 2 cut(s) 9, 230
Sau3AI GATC 2 cut(s) 101, 220
ScrFI CCNGG 1 cut(s) 225
SetI ASST 6 cut(s) 66, 156, 193, 250, 285, 304
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 97, 264
SmoI CTYRAG 2 cut(s) 97, 264
Sse9I AATT 3 cut(s) 18, 231, 270
SspI AATATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 201
TasI AATT 3 cut(s) 18, 231, 270
TfiI GAWTC 2 cut(s) 38, 44
Tru1I TTAA 2 cut(s) 9, 230
Tru9I TTAA 2 cut(s) 9, 230
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 2 cut(s) 80, 245
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.