FvH4_7g05070

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000254
Physical Location & Seq
Reverse (-)
5460086 .. 5461488
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05070.t1

Sequence Viewer

Length: 570 bp
ATGGCGTTCGCTCCGTCGTCAGGGGCGGAGGGGCTGGGTAGTAGGTCTCTTAAAGGGCTCAAGGTGGCGGTCGTAGATGATGGGCTAGGTCGAATCCGCCACCCTAATGCTCTGAATCATGAATTCTCACCGACGAGAGGACGACTACCTGGAAAATCAGAAGCGGCTTCTGAAGTCTCGGTGGTGAATTATCTTCTTCTTTTCATGCTCAAAGAGAAAGTCCTTTCTGGTCAAATTGGTGCTGGAGGTGTGATCAGCACCCCAGTTTGTTTTCAGGTTAATCTTGGTGTTGGGGATATCTTAGATGCTGAGGCTTGGGGATTATTTTTTGGGATTAGCTTCAAAATGCACATTATTCACGTGGAAGTTGAGTCTGATTATGCATTATTAGTGCAGCTGGTTCAGAATGTTGAAGTTTTTGACCCTCATCCCCTTAGCAATATGACAGCTGATGCCCTTGCCGAAAACAGTGTTAATCATGAGCTTGGTTTCATTGCTTTTGACCATCTTCCCATTCATGGTGCACAAGCCTTTCCGGATGACATGCTGCCGTCTGTAGAGCTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

190

Amino Acids

20.19

Weight (kDa)

4.99

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 4 cut(s) 26, 68, 97, 164
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 192
AcvI CACGTG 1 cut(s) 361
AfiI CCNNNNNNNGG 3 cut(s) 20, 137, 518
AgsI TTSAA 2 cut(s) 343, 413
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 5 cut(s) 339, 397, 449, 484, 562
AluI AGCT 5 cut(s) 339, 397, 449, 484, 562
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 2 cut(s) 51, 181
Alw44I GTGCAC 1 cut(s) 522
Aor13HI TCCGGA 1 cut(s) 535
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 2 cut(s) 394, 547
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AsuHPI GGTGA 2 cut(s) 120, 196
BaeGI GKGCMC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 60
BbrPI CACGTG 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 406, 534
BccI CCATC 2 cut(s) 74, 513
BceAI ACGGC 1 cut(s) 535
BciT130I CCWGG 1 cut(s) 150
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 51, 181
BfaI CTAG 2 cut(s) 86, 563
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 3 cut(s) 165, 395, 548
BlsI GCNGC 3 cut(s) 166, 396, 549
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 2 cut(s) 295, 442
BmuI ACTGGG 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 309, 434
BpuEI CTTGAG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 535
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 137, 518
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 427, 544
BseLI CCNNNNNNNGG 3 cut(s) 20, 137, 518
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 526
BseXI GCAGC 2 cut(s) 406, 534
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 20, 137, 518
BsmAI GTCTC 2 cut(s) 51, 181
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 60, 526
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 4 cut(s) 26, 68, 97, 164
BspCNI CTCAG 1 cut(s) 301
BspEI TCCGGA 1 cut(s) 535
BspHI TCATGA 2 cut(s) 118, 478
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 1 cut(s) 263
BssMI GATC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 470
BstBAI YACGTR 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 301, 309, 434
BstF5I GGATG 2 cut(s) 427, 544
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 51, 181
BstMBI GATC 1 cut(s) 252
BstMCI CGRYCG 1 cut(s) 72
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 526
BstV1I GCAGC 2 cut(s) 406, 534
BtsCI GGATG 2 cut(s) 427, 544
BtsIMutI CAGTG 1 cut(s) 475
CciI TCATGA 2 cut(s) 118, 478
CviAII CATG 5 cut(s) 119, 205, 479, 518, 544
DdeI CTNAG 3 cut(s) 301, 309, 434
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EciI GGCGGA 2 cut(s) 41, 86
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 192
Eco72I CACGTG 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 5 cut(s) 122, 208, 482, 521, 547
FaiI YATR 7 cut(s) 120, 206, 381, 443, 480, 519, 545
FatI CATG 5 cut(s) 118, 204, 478, 517, 543
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 165, 395, 548
FokI GGATG 2 cut(s) 414, 551
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 3 cut(s) 165, 395, 548
FspBI CTAG 2 cut(s) 86, 563
GluI GCNGC 3 cut(s) 165, 395, 548
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 264
HapII CCGG 1 cut(s) 536
Hin1II CATG 5 cut(s) 122, 208, 482, 521, 547
HinfI GANTC 3 cut(s) 93, 115, 371
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 120, 196
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 5 cut(s) 114, 160, 172, 376, 405
Hpy188III TCNNGA 3 cut(s) 119, 479, 536
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 2 cut(s) 19, 136
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 349, 383, 394, 524
HpyF3I CTNAG 3 cut(s) 301, 309, 434
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 5 cut(s) 122, 208, 482, 521, 547
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 406, 534
LweI GCATC 2 cut(s) 295, 442
MaeI CTAG 2 cut(s) 86, 563
MaeII ACGT 1 cut(s) 360
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 3 cut(s) 185, 188, 500
MhlI GDGCHC 2 cut(s) 60, 526
MluCI AATT 3 cut(s) 122, 187, 234
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 5 cut(s) 22, 131, 239, 304, 435
Mph1103I ATGCAT 1 cut(s) 385
MroI TCCGGA 1 cut(s) 535
MseI TTAA 3 cut(s) 51, 279, 474
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 397, 449
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 252
NlaIII CATG 5 cut(s) 122, 208, 482, 521, 547
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 1 cut(s) 547
PagI TCATGA 2 cut(s) 118, 478
PfeI GAWTC 2 cut(s) 93, 115
PkrI GCNGC 3 cut(s) 166, 396, 549
PleI GAGTC 1 cut(s) 379
PmaCI CACGTG 1 cut(s) 361
PmlI CACGTG 1 cut(s) 361
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 148
PspCI CACGTG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 148
PvuII CAGCTG 2 cut(s) 397, 449
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 51, 279, 474
SatI GCNGC 3 cut(s) 165, 395, 548
Sau3AI GATC 1 cut(s) 252
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 60, 526
SfaNI GCATC 2 cut(s) 295, 442
SfcI CTRYAG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 122, 187, 234
SsiI CCGC 4 cut(s) 26, 68, 97, 164
SspMI CTAG 2 cut(s) 86, 563
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 91
TasI AATT 3 cut(s) 122, 187, 234
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 2 cut(s) 93, 115
Tru1I TTAA 3 cut(s) 51, 279, 474
Tru9I TTAA 3 cut(s) 51, 279, 474
TscAI CASTG 1 cut(s) 475
TseI GCWGC 2 cut(s) 394, 547
TspDTI ATGAA 4 cut(s) 135, 193, 481, 506
TspRI CASTG 1 cut(s) 475
VneI GTGCAC 1 cut(s) 522
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 547
XspI CTAG 2 cut(s) 86, 563
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.