Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 33 - 74 | 2.1e-07 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 82 - 291 | 2.8e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 265 - 537 | 4.5e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 380 - 440 | 3.1e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 455 - 514 | 4.9e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1554 |
| AarI | CACCTGC | 1 cut(s) | 2508 |
| Acc36I | ACCTGC | 1 cut(s) | 2508 |
| Acc65I | GGTACC | 2 cut(s) | 847, 2369 |
| AccB1I | GGYRCC | 3 cut(s) | 847, 2369, 2932 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 920 |
| AccBSI | CCGCTC | 1 cut(s) | 2784 |
| AccI | GTMKAC | 1 cut(s) | 2172 |
| AciI | CCGC | 3 cut(s) | 1869, 2006, 2784 |
| AclWI | GGATC | 3 cut(s) | 1999, 2650, 3168 |
| AcoI | YGGCCR | 5 cut(s) | 82, 378, 1131, 1615, 2149 |
| AcuI | CTGAAG | 6 cut(s) | 719, 1310, 1820, 2000, 2493, 3146 |
| AdeI | CACNNNGTG | 1 cut(s) | 59 |
| AfaI | GTAC | 8 cut(s) | 308, 502, 823, 849, 1407, 2097, 2313, 2371 |
| AfeI | AGCGCT | 1 cut(s) | 2811 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 70, 325, 920, 1837, 3142 |
| AflIII | ACRYGT | 1 cut(s) | 1086 |
| AjnI | CCWGG | 8 cut(s) | 222, 490, 1409, 1761, 1987, 2146, 2372, 2428 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 673, 705, 1301, 1333, 3138, 3170 |
| Alw21I | GWGCWC | 3 cut(s) | 292, 604, 928 |
| Alw26I | GTCTC | 3 cut(s) | 82, 1959, 2840 |
| AlwI | GGATC | 3 cut(s) | 1999, 2650, 3168 |
| Ama87I | CYCGRG | 1 cut(s) | 2750 |
| Aor51HI | AGCGCT | 1 cut(s) | 2811 |
| ApeKI | GCWGC | 4 cut(s) | 103, 115, 1026, 2952 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 547, 2013, 3131 |
| Asp718I | GGTACC | 2 cut(s) | 847, 2369 |
| AspLEI | GCGC | 2 cut(s) | 2404, 2812 |
| AspS9I | GGNCC | 9 cut(s) | 677, 933, 1037, 1400, 1672, 1778, 2714, 2761, 2786 |
| AsuC2I | CCSGG | 1 cut(s) | 1978 |
| AsuHPI | GGTGA | 5 cut(s) | 1937, 2432, 2489, 2599, 2961 |
| AvaI | CYCGRG | 1 cut(s) | 2750 |
| AvaII | GGWCC | 5 cut(s) | 933, 1037, 1672, 1778, 2761 |
| AxyI | CCTNAGG | 1 cut(s) | 641 |
| BaeGI | GKGCMC | 1 cut(s) | 2935 |
| BalI | TGGCCA | 5 cut(s) | 84, 380, 1133, 1617, 2151 |
| BanI | GGYRCC | 3 cut(s) | 847, 2369, 2932 |
| BanII | GRGCYC | 2 cut(s) | 604, 928 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 323, 355, 1389, 1421, 2428, 2460 |
| BbsI | GAAGAC | 2 cut(s) | 1569, 2499 |
| Bbv12I | GWGCWC | 3 cut(s) | 292, 604, 928 |
| BbvCI | CCTCAGC | 1 cut(s) | 3138 |
| BbvI | GCAGC | 4 cut(s) | 102, 115, 1038, 2964 |
| BceAI | ACGGC | 1 cut(s) | 1448 |
| BciT130I | CCWGG | 8 cut(s) | 224, 492, 1411, 1763, 1989, 2148, 2374, 2430 |
| BciVI | GTATCC | 1 cut(s) | 2263 |
| BcnI | CCSGG | 1 cut(s) | 1978 |
| BcoDI | GTCTC | 3 cut(s) | 82, 1959, 2840 |
| BfaI | CTAG | 5 cut(s) | 944, 1172, 1905, 2192, 2216 |
| BfmI | CTRYAG | 4 cut(s) | 302, 857, 2169, 2501 |
| BfoI | RGCGCY | 1 cut(s) | 2813 |
| BfuAI | ACCTGC | 1 cut(s) | 2508 |
| BfuI | GTATCC | 1 cut(s) | 2263 |
| BglII | AGATCT | 1 cut(s) | 1012 |
| BisI | GCNGC | 5 cut(s) | 104, 116, 1027, 1869, 2953 |
| BlsI | GCNGC | 5 cut(s) | 105, 117, 1028, 1870, 2954 |
| BmcAI | AGTACT | 1 cut(s) | 2097 |
| Bme1390I | CCNGG | 9 cut(s) | 224, 492, 1411, 1763, 1978, 1989, 2148, 2374, 2430 |
| Bme18I | GGWCC | 5 cut(s) | 933, 1037, 1672, 1778, 2761 |
| BmeT110I | CYCGRG | 1 cut(s) | 2750 |
| BmgT120I | GGNCC | 9 cut(s) | 677, 933, 1037, 1400, 1672, 1778, 2714, 2761, 2786 |
| BmiI | GGNNCC | 5 cut(s) | 849, 1038, 1474, 2371, 2934 |
| BmrFI | CCNGG | 9 cut(s) | 224, 492, 1411, 1763, 1978, 1989, 2148, 2374, 2430 |
| BmrI | ACTGGG | 1 cut(s) | 3016 |
| BmsI | GCATC | 4 cut(s) | 526, 2464, 2965, 3071 |
| BmuI | ACTGGG | 1 cut(s) | 3016 |
| BpiI | GAAGAC | 2 cut(s) | 1569, 2499 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2071, 2103 |
| BpmI | CTGGAG | 2 cut(s) | 735, 1870 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2780, 3138 |
| BpuEI | CTTGAG | 6 cut(s) | 268, 469, 533, 977, 1663, 2851 |
| BpuMI | CCSGG | 1 cut(s) | 1978 |
| Bsa29I | ATCGAT | 2 cut(s) | 260, 1994 |
| BsaI | GGTCTC | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 7 cut(s) | 223, 1409, 1761, 2248, 2680, 2757, 3188 |
| BsaWI | WCCGGW | 1 cut(s) | 1912 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1711, 1741, 2878, 2908 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 70, 325, 920, 1837, 3142 |
| Bse21I | CCTNAGG | 1 cut(s) | 641 |
| Bse3DI | GCAATG | 4 cut(s) | 886, 2008, 2082, 2463 |
| BseBI | CCWGG | 8 cut(s) | 224, 492, 1411, 1763, 1989, 2148, 2374, 2430 |
| BseCI | ATCGAT | 2 cut(s) | 260, 1994 |
| BseDI | CCNNGG | 7 cut(s) | 223, 1409, 1761, 2248, 2680, 2757, 3188 |
| BseGI | GGATG | 4 cut(s) | 517, 1255, 2357, 2551 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 70, 325, 920, 1837, 3142 |
| BseMI | GCAATG | 4 cut(s) | 886, 2008, 2082, 2463 |
| BseMII | CTCAG | 9 cut(s) | 70, 617, 632, 729, 1601, 1652, 1738, 2771, 3152 |
| BseSI | GKGCMC | 1 cut(s) | 2935 |
| BseXI | GCAGC | 4 cut(s) | 102, 115, 1038, 2964 |
| BseYI | CCCAGC | 1 cut(s) | 2650 |
| BshNI | GGYRCC | 3 cut(s) | 847, 2369, 2932 |
| BshVI | ATCGAT | 2 cut(s) | 260, 1994 |
| BsiHKAI | GWGCWC | 3 cut(s) | 292, 604, 928 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2750 |
| BsiSI | CCGG | 3 cut(s) | 974, 1913, 1977 |
| BslFI | GGGAC | 3 cut(s) | 1050, 1252, 2676 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 70, 325, 920, 1837, 3142 |
| BsmAI | GTCTC | 3 cut(s) | 82, 1959, 2840 |
| BsmFI | GGGAC | 3 cut(s) | 1050, 1252, 2676 |
| BsmI | GAATGC | 4 cut(s) | 412, 1845, 1983, 2385 |
| Bso31I | GGTCTC | 1 cut(s) | 82 |
| BsoBI | CYCGRG | 1 cut(s) | 2750 |
| Bsp1286I | GDGCHC | 4 cut(s) | 292, 604, 928, 2935 |
| Bsp19I | CCATGG | 2 cut(s) | 2680, 3188 |
| BspACI | CCGC | 3 cut(s) | 1869, 2006, 2784 |
| BspCNI | CTCAG | 9 cut(s) | 69, 616, 633, 728, 1600, 1653, 1737, 2772, 3151 |
| BspDI | ATCGAT | 2 cut(s) | 260, 1994 |
| BspHI | TCATGA | 1 cut(s) | 801 |
| BspLI | GGNNCC | 5 cut(s) | 849, 1038, 1474, 2371, 2934 |
| BspMAI | CTGCAG | 3 cut(s) | 306, 861, 2505 |
| BspMI | ACCTGC | 1 cut(s) | 2508 |
| BspPI | GGATC | 3 cut(s) | 1999, 2650, 3168 |
| BspQI | GCTCTTC | 2 cut(s) | 879, 933 |
| BspT107I | GGYRCC | 3 cut(s) | 847, 2369, 2932 |
| BspTNI | GGTCTC | 1 cut(s) | 82 |
| BsrBI | CCGCTC | 1 cut(s) | 2784 |
| BsrDI | GCAATG | 4 cut(s) | 886, 2008, 2082, 2463 |
| BssECI | CCNNGG | 7 cut(s) | 223, 1409, 1761, 2248, 2680, 2757, 3188 |
| BssT1I | CCWWGG | 4 cut(s) | 2248, 2680, 2757, 3188 |
| Bst2UI | CCWGG | 8 cut(s) | 224, 492, 1411, 1763, 1989, 2148, 2374, 2430 |
| Bst4CI | ACNGT | 8 cut(s) | 197, 1490, 1945, 2170, 2230, 2557, 2602, 2853 |
| Bst6I | CTCTTC | 5 cut(s) | 879, 933, 1284, 1357, 2904 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 112, 1300 |
| BstC8I | GCNNGC | 4 cut(s) | 412, 2125, 2454, 2786 |
| BstDSI | CCRYGG | 2 cut(s) | 2680, 3188 |
| BstF5I | GGATG | 4 cut(s) | 517, 1255, 2357, 2551 |
| BstH2I | RGCGCY | 1 cut(s) | 2813 |
| BstHHI | GCGC | 2 cut(s) | 2404, 2812 |
| BstMAI | GTCTC | 3 cut(s) | 82, 1959, 2840 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 112, 416, 514, 599, 953, 1300, 2809, 2961 |
| BstNI | CCWGG | 8 cut(s) | 224, 492, 1411, 1763, 1989, 2148, 2374, 2430 |
| BstNSI | RCATGY | 4 cut(s) | 1090, 2952, 3042, 3176 |
| BstSCI | CCNGG | 9 cut(s) | 222, 490, 1409, 1761, 1976, 1987, 2146, 2372, 2428 |
| BstSFI | CTRYAG | 4 cut(s) | 302, 857, 2169, 2501 |
| BstSLI | GKGCMC | 1 cut(s) | 2935 |
| BstV1I | GCAGC | 4 cut(s) | 102, 115, 1038, 2964 |
| BstV2I | GAAGAC | 2 cut(s) | 1569, 2499 |
| BstX2I | RGATCY | 1 cut(s) | 1012 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1694 |
| BstYI | RGATCY | 1 cut(s) | 1012 |
| Bsu15I | ATCGAT | 2 cut(s) | 260, 1994 |
| Bsu36I | CCTNAGG | 1 cut(s) | 641 |
| BsuI | GTATCC | 1 cut(s) | 2263 |
| BsuTUI | ATCGAT | 2 cut(s) | 260, 1994 |
| BtgI | CCRYGG | 2 cut(s) | 2680, 3188 |
| BtgZI | GCGATG | 1 cut(s) | 3043 |
| BtsCI | GGATG | 4 cut(s) | 517, 1255, 2357, 2551 |
| BtsI | GCAGTG | 2 cut(s) | 503, 629 |
| BveI | ACCTGC | 1 cut(s) | 2508 |
| Cac8I | GCNNGC | 4 cut(s) | 412, 2125, 2454, 2786 |
| CciI | TCATGA | 1 cut(s) | 801 |
| CfoI | GCGC | 2 cut(s) | 2404, 2812 |
| Cfr13I | GGNCC | 9 cut(s) | 677, 933, 1037, 1400, 1672, 1778, 2714, 2761, 2786 |
| ClaI | ATCGAT | 2 cut(s) | 260, 1994 |
| CseI | GACGC | 1 cut(s) | 2352 |
| Csp6I | GTAC | 8 cut(s) | 307, 501, 822, 848, 1406, 2096, 2312, 2370 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 148, 183, 2398, 2433, 2712, 2747 |
| CviQI | GTAC | 8 cut(s) | 307, 501, 822, 848, 1406, 2096, 2312, 2370 |
| DraI | TTTAAA | 1 cut(s) | 2163 |
| DraIII | CACNNNGTG | 1 cut(s) | 59 |
| EaeI | YGGCCR | 5 cut(s) | 82, 378, 1131, 1615, 2149 |
| Eam1104I | CTCTTC | 5 cut(s) | 879, 933, 1284, 1357, 2904 |
| EarI | CTCTTC | 5 cut(s) | 879, 933, 1284, 1357, 2904 |
| Ecl136II | GAGCTC | 2 cut(s) | 602, 926 |
| Eco130I | CCWWGG | 4 cut(s) | 2248, 2680, 2757, 3188 |
| Eco24I | GRGCYC | 2 cut(s) | 604, 928 |
| Eco31I | GGTCTC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 5 cut(s) | 933, 1037, 1672, 1778, 2761 |
| Eco47III | AGCGCT | 1 cut(s) | 2811 |
| Eco53kI | GAGCTC | 2 cut(s) | 602, 926 |
| Eco57I | CTGAAG | 6 cut(s) | 719, 1310, 1820, 2000, 2493, 3146 |
| Eco81I | CCTNAGG | 1 cut(s) | 641 |
| Eco88I | CYCGRG | 1 cut(s) | 2750 |
| EcoICRI | GAGCTC | 2 cut(s) | 602, 926 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1778, 2714 |
| EcoRI | GAATTC | 2 cut(s) | 495, 805 |
| EcoRII | CCWGG | 8 cut(s) | 222, 490, 1409, 1761, 1987, 2146, 2372, 2428 |
| EcoT14I | CCWWGG | 4 cut(s) | 2248, 2680, 2757, 3188 |
| EcoT38I | GRGCYC | 2 cut(s) | 604, 928 |
| ErhI | CCWWGG | 4 cut(s) | 2248, 2680, 2757, 3188 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 824, 856, 999, 1031 |
| FaqI | GGGAC | 3 cut(s) | 1050, 1252, 2676 |
| FauI | CCCGC | 1 cut(s) | 2777 |
| FblI | GTMKAC | 1 cut(s) | 2172 |
| Fnu4HI | GCNGC | 5 cut(s) | 104, 116, 1027, 1869, 2953 |
| FokI | GGATG | 4 cut(s) | 504, 1262, 2364, 2558 |
| FriOI | GRGCYC | 2 cut(s) | 604, 928 |
| Fsp4HI | GCNGC | 5 cut(s) | 104, 116, 1027, 1869, 2953 |
| FspBI | CTAG | 5 cut(s) | 944, 1172, 1905, 2192, 2216 |
| GlaI | GCGC | 2 cut(s) | 2403, 2811 |
| GluI | GCNGC | 5 cut(s) | 104, 116, 1027, 1869, 2953 |
| GsaI | CCCAGC | 1 cut(s) | 2654 |
| GsuI | CTGGAG | 2 cut(s) | 735, 1870 |
| HaeII | RGCGCY | 1 cut(s) | 2813 |
| HapII | CCGG | 3 cut(s) | 974, 1913, 1977 |
| HgaI | GACGC | 1 cut(s) | 2352 |
| HhaI | GCGC | 2 cut(s) | 2404, 2812 |
| Hin6I | GCGC | 2 cut(s) | 2402, 2810 |
| HinP1I | GCGC | 2 cut(s) | 2402, 2810 |
| HincII | GTYRAC | 3 cut(s) | 1816, 2395, 2617 |
| HindII | GTYRAC | 3 cut(s) | 1816, 2395, 2617 |
| HindIII | AAGCTT | 3 cut(s) | 701, 1100, 2437 |
| HpaII | CCGG | 3 cut(s) | 974, 1913, 1977 |
| HphI | GGTGA | 5 cut(s) | 1937, 2432, 2489, 2599, 2961 |
| HpyCH4III | ACNGT | 8 cut(s) | 197, 1490, 1945, 2170, 2230, 2557, 2602, 2853 |
| HpyCH4IV | ACGT | 1 cut(s) | 1802 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 112, 416, 514, 599, 953, 1300, 2809, 2961 |
| HpySE526I | ACGT | 1 cut(s) | 1802 |
| HspAI | GCGC | 2 cut(s) | 2402, 2810 |
| KpnI | GGTACC | 2 cut(s) | 851, 2373 |
| LguI | GCTCTTC | 2 cut(s) | 879, 933 |
| LmnI | GCTCC | 6 cut(s) | 123, 599, 754, 923, 1478, 1980 |
| Lsp1109I | GCAGC | 4 cut(s) | 102, 115, 1038, 2964 |
| LweI | GCATC | 4 cut(s) | 526, 2464, 2965, 3071 |
| MaeI | CTAG | 5 cut(s) | 944, 1172, 1905, 2192, 2216 |
| MaeII | ACGT | 1 cut(s) | 1802 |
| MaeIII | GTNAC | 7 cut(s) | 89, 232, 813, 1235, 2557, 2735, 2944 |
| MbiI | CCGCTC | 1 cut(s) | 2784 |
| MfeI | CAATTG | 3 cut(s) | 122, 681, 2221 |
| MflI | RGATCY | 1 cut(s) | 1012 |
| MhlI | GDGCHC | 4 cut(s) | 292, 604, 928, 2935 |
| MlsI | TGGCCA | 5 cut(s) | 84, 380, 1133, 1617, 2151 |
| MluNI | TGGCCA | 5 cut(s) | 84, 380, 1133, 1617, 2151 |
| MlyI | GAGTC | 3 cut(s) | 1525, 2762, 2842 |
| MmeI | TCCRAC | 6 cut(s) | 1332, 1453, 1519, 1851, 2214, 2382 |
| Mox20I | TGGCCA | 5 cut(s) | 84, 380, 1133, 1617, 2151 |
| MroXI | GAANNNNTTC | 3 cut(s) | 547, 2013, 3131 |
| MscI | TGGCCA | 5 cut(s) | 84, 380, 1133, 1617, 2151 |
| MslI | CAYNNNNRTG | 1 cut(s) | 573 |
| Msp20I | TGGCCA | 5 cut(s) | 84, 380, 1133, 1617, 2151 |
| MspA1I | CMGCKG | 1 cut(s) | 3142 |
| MspI | CCGG | 3 cut(s) | 974, 1913, 1977 |
| MspR9I | CCNGG | 9 cut(s) | 224, 492, 1411, 1763, 1978, 1989, 2148, 2374, 2430 |
| MunI | CAATTG | 3 cut(s) | 122, 681, 2221 |
| Mva1269I | GAATGC | 4 cut(s) | 412, 1845, 1983, 2385 |
| MvaI | CCWGG | 8 cut(s) | 224, 492, 1411, 1763, 1989, 2148, 2374, 2430 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 112, 416, 514, 599, 953, 1300, 2809, 2961 |
| NciI | CCSGG | 1 cut(s) | 1978 |
| NcoI | CCATGG | 2 cut(s) | 2680, 3188 |
| NlaIV | GGNNCC | 5 cut(s) | 849, 1038, 1474, 2371, 2934 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| NspI | RCATGY | 4 cut(s) | 1090, 2952, 3042, 3176 |
| PaeR7I | CTCGAG | 1 cut(s) | 2750 |
| PagI | TCATGA | 1 cut(s) | 801 |
| PaqCI | CACCTGC | 1 cut(s) | 2508 |
| PciI | ACATGT | 1 cut(s) | 1086 |
| PciSI | GCTCTTC | 2 cut(s) | 879, 933 |
| PctI | GAATGC | 4 cut(s) | 412, 1845, 1983, 2385 |
| PdmI | GAANNNNTTC | 3 cut(s) | 547, 2013, 3131 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 920 |
| PfoI | TCCNGGA | 2 cut(s) | 490, 1987 |
| PkrI | GCNGC | 5 cut(s) | 105, 117, 1028, 1870, 2954 |
| PleI | GAGTC | 3 cut(s) | 1524, 2761, 2841 |
| PpsI | GAGTC | 3 cut(s) | 1524, 2761, 2841 |
| PpuMI | RGGWCCY | 1 cut(s) | 1778 |
| PscI | ACATGT | 1 cut(s) | 1086 |
| PsiI | TTATAA | 1 cut(s) | 1554 |
| Psp124BI | GAGCTC | 2 cut(s) | 604, 928 |
| Psp5II | RGGWCCY | 1 cut(s) | 1778 |
| Psp6I | CCWGG | 8 cut(s) | 222, 490, 1409, 1761, 1987, 2146, 2372, 2428 |
| PspFI | CCCAGC | 1 cut(s) | 2650 |
| PspGI | CCWGG | 8 cut(s) | 222, 490, 1409, 1761, 1987, 2146, 2372, 2428 |
| PspN4I | GGNNCC | 5 cut(s) | 849, 1038, 1474, 2371, 2934 |
| PspPI | GGNCC | 9 cut(s) | 677, 933, 1037, 1400, 1672, 1778, 2714, 2761, 2786 |
| PspPPI | RGGWCCY | 1 cut(s) | 1778 |
| PspXI | VCTCGAGB | 1 cut(s) | 2750 |
| PstI | CTGCAG | 3 cut(s) | 306, 861, 2505 |
| PsuI | RGATCY | 1 cut(s) | 1012 |
| PvuII | CAGCTG | 1 cut(s) | 3142 |
| RsaI | GTAC | 8 cut(s) | 308, 502, 823, 849, 1407, 2097, 2313, 2371 |
| RsaNI | GTAC | 8 cut(s) | 307, 501, 822, 848, 1406, 2096, 2312, 2370 |
| RseI | CAYNNNNRTG | 1 cut(s) | 573 |
| SacI | GAGCTC | 2 cut(s) | 604, 928 |
| SapI | GCTCTTC | 2 cut(s) | 879, 933 |
| SatI | GCNGC | 5 cut(s) | 104, 116, 1027, 1869, 2953 |
| Sau96I | GGNCC | 9 cut(s) | 677, 933, 1037, 1400, 1672, 1778, 2714, 2761, 2786 |
| ScaI | AGTACT | 1 cut(s) | 2097 |
| SchI | GAGTC | 3 cut(s) | 1525, 2762, 2842 |
| ScrFI | CCNGG | 9 cut(s) | 224, 492, 1411, 1763, 1978, 1989, 2148, 2374, 2430 |
| SduI | GDGCHC | 4 cut(s) | 292, 604, 928, 2935 |
| SfaNI | GCATC | 4 cut(s) | 526, 2464, 2965, 3071 |
| SfcI | CTRYAG | 4 cut(s) | 302, 857, 2169, 2501 |
| Sfr274I | CTCGAG | 1 cut(s) | 2750 |
| SinI | GGWCC | 5 cut(s) | 933, 1037, 1672, 1778, 2761 |
| SlaI | CTCGAG | 1 cut(s) | 2750 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 573 |
| SmlI | CTYRAG | 7 cut(s) | 247, 448, 512, 992, 1642, 2750, 2830 |
| SmoI | CTYRAG | 7 cut(s) | 247, 448, 512, 992, 1642, 2750, 2830 |
| SsiI | CCGC | 3 cut(s) | 1869, 2006, 2784 |
| SspMI | CTAG | 5 cut(s) | 944, 1172, 1905, 2192, 2216 |
| SstI | GAGCTC | 2 cut(s) | 604, 928 |
| StyD4I | CCNGG | 9 cut(s) | 222, 490, 1409, 1761, 1976, 1987, 2146, 2372, 2428 |
| StyI | CCWWGG | 4 cut(s) | 2248, 2680, 2757, 3188 |
| TaaI | ACNGT | 8 cut(s) | 197, 1490, 1945, 2170, 2230, 2557, 2602, 2853 |
| TaiI | ACGT | 1 cut(s) | 1805 |
| TaqI | TCGA | 8 cut(s) | 260, 312, 404, 1004, 1052, 1514, 1994, 2751 |
| TaqII | GACCGA | 1 cut(s) | 921 |
| TatI | WGTACW | 3 cut(s) | 306, 2095, 2311 |
| TauI | GCSGC | 1 cut(s) | 1871 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| TseI | GCWGC | 4 cut(s) | 103, 115, 1026, 2952 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspGWI | ACGGA | 1 cut(s) | 1082 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 920 |
| VpaK11BI | GGWCC | 5 cut(s) | 933, 1037, 1672, 1778, 2761 |
| XbaI | TCTAGA | 1 cut(s) | 2191 |
| XceI | RCATGY | 4 cut(s) | 1090, 2952, 3042, 3176 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1603 |
| XhoI | CTCGAG | 1 cut(s) | 2750 |
| XmiI | GTMKAC | 1 cut(s) | 2172 |
| XmnI | GAANNNNTTC | 3 cut(s) | 547, 2013, 3131 |
| XspI | CTAG | 5 cut(s) | 944, 1172, 1905, 2192, 2216 |
| ZrmI | AGTACT | 1 cut(s) | 2097 |