Rmu_sc0013205.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013205.1
OG0000254
Physical Location & Seq
Forward (+)
22791 .. 23138
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013205.1_g000002.1.cds

Sequence Viewer

Length: 348 bp
atgactggtttatccattgccagggagttgggtattacacatattgaagttgaaactgactcagctgttcttatgcagctcatgatgcattgtgatattgatcttcatcctttgggaaccttattatccaactgtcaaactatgctcaattcctttgaatttcattccatacaacacattcatcgggagcgaaatatggtagctgatggattagctaaaagaagtactgatcaagagcttggattatgcaggtgtccttcagctccttcctttatttgtcaagccatgcttgatgacattgatggctttgctaggcctagagtgttcagatcagttgaggctttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

5.35

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 3 cut(s) 47, 53, 158
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 6 cut(s) 65, 79, 203, 215, 238, 263
AluI AGCT 6 cut(s) 65, 79, 203, 215, 238, 263
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 158
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 200, 296
BciT130I CCWGG 1 cut(s) 22
BclI TGATCA 1 cut(s) 229
BfaI CTAG 2 cut(s) 312, 318
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 75
BsaBI GATNNNNATC 2 cut(s) 99, 105
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 2 cut(s) 99, 105
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 2 cut(s) 99, 105
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 316
Bsp143I GATC 3 cut(s) 100, 229, 329
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 100, 229, 329
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 3 cut(s) 103, 232, 332
BstMBI GATC 3 cut(s) 100, 229, 329
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 28
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 81
Csp6I GTAC 1 cut(s) 225
CviAII CATG 2 cut(s) 82, 286
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 61
DpnI GATC 3 cut(s) 102, 231, 331
DpnII GATC 3 cut(s) 100, 229, 329
Eco147I AGGCCT 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 90
FaeI CATG 2 cut(s) 85, 289
FaiI YATR 8 cut(s) 42, 74, 83, 143, 170, 197, 247, 287
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 2 cut(s) 81, 285
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 2 cut(s) 312, 318
GluI GCNGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 316
Hin1II CATG 2 cut(s) 85, 289
HinfI GANTC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 3 cut(s) 82, 185, 233
HpyAV CCTTC 2 cut(s) 267, 276
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 76, 88, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 2 cut(s) 85, 289
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 100, 229, 329
LmnI GCTCC 2 cut(s) 187, 268
LpnPI CCDG 3 cut(s) 7, 34, 235
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 75
MaeI CTAG 2 cut(s) 312, 318
MalI GATC 3 cut(s) 102, 231, 331
MboI GATC 3 cut(s) 100, 229, 329
MboII GAAGA 1 cut(s) 95
MluCI AATT 2 cut(s) 148, 158
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 331
Mph1103I ATGCAT 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 3 cut(s) 100, 229, 329
NlaIII CATG 2 cut(s) 85, 289
NlaIV GGNNCC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 90
PagI TCATGA 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 240
PceI AGGCCT 1 cut(s) 316
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 100, 229, 329
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 22
SetI ASST 8 cut(s) 67, 81, 122, 205, 217, 240, 254, 265
SfaNI GCATC 1 cut(s) 75
Sse9I AATT 2 cut(s) 148, 158
SseBI AGGCCT 1 cut(s) 316
SspMI CTAG 2 cut(s) 312, 318
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 134
TasI AATT 2 cut(s) 148, 158
TatI WGTACW 1 cut(s) 224
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 95, 152, 170
XapI RAATTY 1 cut(s) 158
XspI CTAG 2 cut(s) 312, 318
ZrmI AGTACT 1 cut(s) 226
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.