Rmu_ssc0000008.1_g000014

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000008.1
OG0000254
Physical Location & Seq
Forward (+)
52313 .. 53768
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000008.1_g000014.1.cds

Sequence Viewer

Length: 666 bp
atgatggcacaagaattgcttcttctggctcaattggtgccggtggtgttactacttattagagaccatcttggcaattggattgctggcttccaaattaaccttggtattggtgctatccttgatgctgaagtttgggggctgtactatcgtctcaaaactgctagaaatctgctcatctccaatctggaaattgagtctgattctgccatccttattaatctcttgcaaagatctgatctatctctgcaccctcttggatctcttatggagggttgtcatcatttcgtatctaccctggacaattctagaattagccatatttttagggagtgcaacatgacagctaatgctctagccaaaaggagtattgagcatgctcttggtcttataatctttgaggatcctcctactcatgctgtgaatgctttcttggatgacttagctggaaagaagtcctttctcggaaggctagaaaagaaccttgtggcgaggttggtgctcttctcgtccacaacgcttgaagaagaagtcaagtcaagggactcccccgacgactgcaccccacggtgctggcacgcccgcacacacgctcaaaagagacagtttgcacgccaaccggttttggagccaaacattttggcacgcccggtgggacgccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

221

Amino Acids

24.81

Weight (kDa)

6.75

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 1 cut(s) 583
AclWI GGATC 3 cut(s) 268, 398, 411
AcuI CTGAAG 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 658
AfaI GTAC 1 cut(s) 146
AgeI ACCGGT 1 cut(s) 619
AgsI TTSAA 1 cut(s) 524
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 2 cut(s) 347, 446
AluI AGCT 2 cut(s) 347, 446
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 3 cut(s) 57, 158, 595
AlwI GGATC 3 cut(s) 268, 398, 411
AseI ATTAAT 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 619
Asp700I GAANNNNTTC 2 cut(s) 18, 428
AsuC2I CCSGG 1 cut(s) 650
BamHI GGATCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 504
BccI CCATC 2 cut(s) 75, 218
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 650
BcoDI GTCTC 3 cut(s) 57, 158, 595
BfaI CTAG 4 cut(s) 165, 309, 356, 473
BglII AGATCT 1 cut(s) 233
Bme1390I CCNGG 2 cut(s) 299, 650
BmiI GGNNCC 3 cut(s) 39, 405, 630
BmrFI CCNGG 2 cut(s) 299, 650
BmsI GCATC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 650
BsaHI GRCGYC 1 cut(s) 658
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 103, 297, 566
BsaWI WCCGGW 1 cut(s) 619
Bse118I RCCGGY 2 cut(s) 40, 619
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 3 cut(s) 103, 297, 566
BseGI GGATG 2 cut(s) 210, 442
BsgI GTGCAG 2 cut(s) 233, 544
BshNI GGYRCC 1 cut(s) 37
BshTI ACCGGT 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 3 cut(s) 41, 620, 650
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 3 cut(s) 57, 158, 595
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 1 cut(s) 430
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 233, 238, 260, 403
BspACI CCGC 1 cut(s) 583
BspLI GGNNCC 3 cut(s) 39, 405, 630
BspPI GGATC 3 cut(s) 268, 398, 411
BspQI GCTCTTC 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 57
BsrFI RCCGGY 2 cut(s) 40, 619
BssAI RCCGGY 2 cut(s) 40, 619
BssECI CCNNGG 3 cut(s) 103, 297, 566
BssMI GATC 4 cut(s) 233, 238, 260, 403
BssNI GRCGYC 1 cut(s) 658
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 570, 606
Bst6I CTCTTC 1 cut(s) 509
BstACI GRCGYC 1 cut(s) 658
BstC8I GCNNGC 7 cut(s) 88, 378, 575, 579, 583, 613, 646
BstDEI CTNAG 1 cut(s) 442
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 210, 442
BstKTI GATC 4 cut(s) 236, 241, 263, 406
BstMAI GTCTC 3 cut(s) 57, 158, 595
BstMBI GATC 4 cut(s) 233, 238, 260, 403
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 297, 648
BstX2I RGATCY 3 cut(s) 233, 260, 403
BstXI CCANNNNNNTGG 1 cut(s) 573
BstYI RGATCY 3 cut(s) 233, 260, 403
BtgI CCRYGG 1 cut(s) 566
BtsCI GGATG 2 cut(s) 210, 442
Cac8I GCNNGC 7 cut(s) 88, 378, 575, 579, 583, 613, 646
Cfr10I RCCGGY 2 cut(s) 40, 619
Csp6I GTAC 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 3 cut(s) 340, 377, 416
CviJI RGCY 9 cut(s) 29, 90, 142, 318, 347, 359, 446, 472, 631
CviKI_1 RGCY 9 cut(s) 29, 90, 142, 318, 347, 359, 446, 472, 631
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 442
DpnI GATC 4 cut(s) 235, 240, 262, 405
DpnII GATC 4 cut(s) 233, 238, 260, 403
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
Eco130I CCWWGG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 3 cut(s) 343, 380, 419
FaiI YATR 6 cut(s) 269, 321, 341, 378, 392, 417
FalI AAGNNNNNCTT 3 cut(s) 35, 443, 475
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 339, 376, 415
FauI CCCGC 1 cut(s) 590
FokI GGATG 2 cut(s) 197, 449
FspBI CTAG 4 cut(s) 165, 309, 356, 473
HapII CCGG 3 cut(s) 41, 620, 650
Hin1I GRCGYC 1 cut(s) 658
Hin1II CATG 3 cut(s) 343, 380, 419
HinfI GANTC 3 cut(s) 197, 203, 545
HpaII CCGG 3 cut(s) 41, 620, 650
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 3 cut(s) 202, 238, 467
Hpy188III TCNNGA 2 cut(s) 188, 309
Hpy8I GTNNAC 1 cut(s) 513
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 1 cut(s) 462
HpyCH4III ACNGT 2 cut(s) 570, 606
HpyCH4V TGCA 5 cut(s) 229, 250, 336, 561, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 1 cut(s) 442
Hsp92I GRCGYC 1 cut(s) 658
Hsp92II CATG 3 cut(s) 343, 380, 419
Kzo9I GATC 4 cut(s) 233, 238, 260, 403
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 1 cut(s) 628
LpnPI CCDG 9 cut(s) 11, 54, 72, 173, 284, 311, 432, 559, 633
LweI GCATC 1 cut(s) 115
MaeI CTAG 4 cut(s) 165, 309, 356, 473
MaeIII GTNAC 1 cut(s) 48
MalI GATC 4 cut(s) 235, 240, 262, 405
MboI GATC 4 cut(s) 233, 238, 260, 403
MboII GAAGA 4 cut(s) 14, 496, 536, 539
MfeI CAATTG 2 cut(s) 32, 76
MflI RGATCY 3 cut(s) 233, 260, 403
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 7 cut(s) 14, 32, 76, 96, 192, 304, 312
MlyI GAGTC 2 cut(s) 206, 539
MnlI CCTC 5 cut(s) 264, 265, 394, 417, 486
MroXI GAANNNNTTC 2 cut(s) 18, 428
MseI TTAA 2 cut(s) 99, 219
MspI CCGG 3 cut(s) 41, 620, 650
MspR9I CCNGG 2 cut(s) 299, 650
MunI CAATTG 2 cut(s) 32, 76
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 425
NciI CCSGG 1 cut(s) 650
NdeII GATC 4 cut(s) 233, 238, 260, 403
NlaIII CATG 3 cut(s) 343, 380, 419
NlaIV GGNNCC 3 cut(s) 39, 405, 630
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 509
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 2 cut(s) 18, 428
PfeI GAWTC 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 619
PleI GAGTC 2 cut(s) 205, 539
PpsI GAGTC 2 cut(s) 205, 539
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 39, 405, 630
PsuI RGATCY 3 cut(s) 233, 260, 403
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 509
SaqAI TTAA 2 cut(s) 99, 219
Sau3AI GATC 4 cut(s) 233, 238, 260, 403
SchI GAGTC 2 cut(s) 206, 539
ScrFI CCNGG 2 cut(s) 299, 650
SduI GDGCHC 1 cut(s) 504
SetI ASST 5 cut(s) 105, 349, 448, 486, 497
SfaNI GCATC 1 cut(s) 115
SphI GCATGC 1 cut(s) 380
Sse9I AATT 7 cut(s) 14, 32, 76, 96, 192, 304, 312
SsiI CCGC 1 cut(s) 583
SspMI CTAG 4 cut(s) 165, 309, 356, 473
StyD4I CCNGG 2 cut(s) 297, 648
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 570, 606
TasI AATT 7 cut(s) 14, 32, 76, 96, 192, 304, 312
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 99, 219
Tru9I TTAA 2 cut(s) 99, 219
VspI ATTAAT 1 cut(s) 219
XbaI TCTAGA 1 cut(s) 308
XceI RCATGY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XmnI GAANNNNTTC 2 cut(s) 18, 428
XspI CTAG 4 cut(s) 165, 309, 356, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.