Rorug01G0474200

Monogalactosyldiacylglycerol synthase 2

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
56479016 .. 56480334
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0474200.1

Sequence Viewer

Length: 651 bp
ATGGAGAGGGAAGTAGAAAGCCTACAGACGCATTCTACTGCGAAAAGGAAGAAGAATAACAAGAGCCAGAATAGTAGGAGGTTTAGTGATGAGCAGATCAAGTTGTTGGAGTCGATATTTGAAGCAGATTCGAAGCTTGAGCCAAGGAGGAAAGTGCAGGTGGCAAGAGAGTTGGGGCTGCAGCCGCGCCAGGTTGCTATATGGTTTCAGAACAGAAGAGCTAGATGGAAGTCGAAGCAAATCGAGCAAGACTTTAGAACACTCAGAAATGAGTATGACTTGTTAGCATCTAAGTTTGAGTCTTTGAAGGAGGAAAAGCAATCCTTGCTTATACAGTTGGAGAAGCTAAATGATCTCATGGGAAAAACAAAAGTTCATGAAGAGAACATGGATGGTAAAGATTTGGAAGGCTCAAGTAACAAAGACGGAGATTGTGAGACTACAGAAGAAAAGCCAAGTCACTTACAGTCCCACAAGAACTTTGCAAGTGATGATGTTGGGAATGAAGGTCATGAGCAGCTTATGAACATGTGTCAAGTAGGAGCTATAGTGTCACCTGAAGATTGGCACAGATTTGATTCAGGCGGTCTCTTTGATCCTCCACGTAGCAGCAGTGCTACTTCACAATGGTTAAATTTCTGGATTAACTAA

Protein Analysis

216

Amino Acids

25.15

Weight (kDa)

6.12

Isoelectric Point (pI)

62.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 77 6.4e-17 Homeodomain
HALZ PF02183 79 - 120 9.2e-13 Homeobox associated leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 148
Acc36I ACCTGC 1 cut(s) 148
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 185, 585
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 1 cut(s) 579
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 2 cut(s) 122, 307
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 5 cut(s) 136, 221, 346, 520, 545
AluI AGCT 5 cut(s) 136, 221, 346, 520, 545
Alw26I GTCTC 2 cut(s) 431, 593
AlwI GGATC 1 cut(s) 590
ApeKI GCWGC 4 cut(s) 178, 181, 517, 609
ApoI RAATTY 1 cut(s) 634
AspLEI GCGC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 546
AsuII TTCGAA 1 cut(s) 131
BbvI GCAGC 4 cut(s) 165, 193, 529, 621
BccI CCATC 2 cut(s) 219, 386
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 431, 593
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 4 cut(s) 23, 179, 441, 546
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 5 cut(s) 179, 182, 185, 518, 610
BlsI GCNGC 5 cut(s) 180, 183, 186, 519, 611
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 2 cut(s) 158, 397
BsaAI YACGTR 1 cut(s) 605
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 143
BsaXI ACNNNNNCTCC 4 cut(s) 70, 100, 534, 564
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 277
BseXI GCAGC 4 cut(s) 165, 193, 529, 621
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 454
BsmAI GTCTC 2 cut(s) 431, 593
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 131
Bsp143I GATC 3 cut(s) 96, 352, 595
BspACI CCGC 2 cut(s) 185, 585
BspCNI CTCAG 1 cut(s) 276
BspFNI CGCG 1 cut(s) 187
BspHI TCATGA 2 cut(s) 376, 511
BspMAI CTGCAG 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 590
BspQI GCTCTTC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 3 cut(s) 96, 352, 595
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 336, 468
Bst6I CTCTTC 2 cut(s) 211, 375
BstAPI GCANNNNNTGC 1 cut(s) 325
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 131
BstDEI CTNAG 2 cut(s) 263, 291
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 187
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 99, 355, 598
BstMAI GTCTC 2 cut(s) 431, 593
BstMBI GATC 3 cut(s) 96, 352, 595
BstMWI GCNNNNNNNGC 3 cut(s) 184, 244, 325
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 532
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 4 cut(s) 23, 179, 441, 546
BstUI CGCG 1 cut(s) 187
BstV1I GCAGC 4 cut(s) 165, 193, 529, 621
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 619
BveI ACCTGC 1 cut(s) 148
CciI TCATGA 2 cut(s) 376, 511
CfoI GCGC 1 cut(s) 189
CseI GACGC 1 cut(s) 37
CviAII CATG 5 cut(s) 358, 377, 388, 512, 529
DdeI CTNAG 2 cut(s) 263, 291
DpnI GATC 3 cut(s) 98, 354, 597
DpnII GATC 3 cut(s) 96, 352, 595
Eam1104I CTCTTC 2 cut(s) 211, 375
EarI CTCTTC 2 cut(s) 211, 375
Eco130I CCWWGG 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 5 cut(s) 361, 380, 391, 515, 532
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 1 cut(s) 454
FatI CATG 5 cut(s) 357, 376, 387, 511, 528
Fnu4HI GCNGC 5 cut(s) 179, 182, 185, 518, 610
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 5 cut(s) 179, 182, 185, 518, 610
FspBI CTAG 1 cut(s) 222
GlaI GCGC 1 cut(s) 188
GluI GCNGC 5 cut(s) 179, 182, 185, 518, 610
HgaI GACGC 1 cut(s) 37
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 361, 380, 391, 515, 532
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 110, 128, 299, 578
HphI GGTGA 1 cut(s) 546
Hpy188I TCNGA 2 cut(s) 210, 266
Hpy188III TCNNGA 3 cut(s) 377, 512, 640
HpyAV CCTTC 3 cut(s) 301, 401, 500
HpyCH4III ACNGT 2 cut(s) 336, 468
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 3 cut(s) 157, 181, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 244, 325
HpyF3I CTNAG 2 cut(s) 263, 291
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 5 cut(s) 361, 380, 391, 515, 532
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 96, 352, 595
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 542
LpnPI CCDG 7 cut(s) 80, 143, 176, 203, 567, 570, 625
Lsp1109I GCAGC 4 cut(s) 165, 193, 529, 621
LweI GCATC 1 cut(s) 296
MaeI CTAG 1 cut(s) 222
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 3 cut(s) 416, 458, 552
MalI GATC 3 cut(s) 98, 354, 597
MboI GATC 3 cut(s) 96, 352, 595
MboII GAAGA 6 cut(s) 61, 64, 228, 392, 458, 572
MluCI AATT 1 cut(s) 634
MlyI GAGTC 2 cut(s) 119, 308
MmeI TCCRAC 2 cut(s) 87, 318
MnlI CCTC 4 cut(s) 72, 141, 304, 609
MseI TTAA 2 cut(s) 632, 645
MspR9I CCNGG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 184, 244, 325
NdeII GATC 3 cut(s) 96, 352, 595
NlaIII CATG 5 cut(s) 361, 380, 391, 515, 532
NmuCI GTSAC 2 cut(s) 458, 552
NspI RCATGY 1 cut(s) 532
NspV TTCGAA 1 cut(s) 131
PagI TCATGA 2 cut(s) 376, 511
PaqCI CACCTGC 1 cut(s) 148
PciI ACATGT 1 cut(s) 528
PciSI GCTCTTC 1 cut(s) 211
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 2 cut(s) 128, 578
PkrI GCNGC 5 cut(s) 180, 183, 186, 519, 611
PleI GAGTC 2 cut(s) 118, 307
PpsI GAGTC 2 cut(s) 118, 307
Ppu21I YACGTR 1 cut(s) 605
PscI ACATGT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PstI CTGCAG 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 2 cut(s) 632, 645
SatI GCNGC 5 cut(s) 179, 182, 185, 518, 610
Sau3AI GATC 3 cut(s) 96, 352, 595
SchI GAGTC 2 cut(s) 119, 308
ScrFI CCNGG 1 cut(s) 191
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 4 cut(s) 23, 179, 441, 546
SfuI TTCGAA 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 137, 412
SmoI CTYRAG 2 cut(s) 137, 412
Sse9I AATT 1 cut(s) 634
SsiI CCGC 2 cut(s) 185, 585
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 336, 468
TaiI ACGT 1 cut(s) 607
TaqI TCGA 4 cut(s) 113, 131, 233, 243
TasI AATT 1 cut(s) 634
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 2 cut(s) 128, 578
Tru1I TTAA 2 cut(s) 632, 645
Tru9I TTAA 2 cut(s) 632, 645
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 2 cut(s) 458, 552
TseI GCWGC 4 cut(s) 178, 181, 517, 609
Tsp45I GTSAC 2 cut(s) 458, 552
TspDTI ATGAA 4 cut(s) 365, 393, 519, 539
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 619
XapI RAATTY 1 cut(s) 634
XceI RCATGY 1 cut(s) 532
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.