Rmu_sc0005065.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005065.1
OG0000254
Physical Location & Seq
Reverse (-)
221 .. 1054
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005065.1_g000001.1.cds

Sequence Viewer

Length: 693 bp
atgagactctcctccacctgttcagagactgctctagatctagacatatttggtctgctattcctaaacccggatccatcatcgcctcctttaccctcgactggcatggttggatcactgctcaactgcattaaatggaggaacaagcagatttttgacccaacctttactctccttattaatcctgggaaagttatacttgactctgctgatgagtggaggattgctgctttcaaggctaaaatgtccactacttgtgattttagcttgttctcttggacaaagcctcctgaagagaccatcttggccattggattgctggcttccaaattaaccttagtattggtactatccttccaaattgctagaaatctgctcatctccaatctggaaattgagtctgattctgccatccttattaatctcttgcaaagatctgatctatctctgcaccctcttggatctcttatggagggttgtcatcatttcatatctaccttggacaattctagaattagccatatttttagagagtgcaacatgacagctgatgctctagccaaaaggagtactgagcatgctcctggtctcatcatctttgaggatccttctactcatgctgtgaatgctttcttggatgacttagatggtgtttctagacctagaagaactgggattactgttgctccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

230

Amino Acids

25.29

Weight (kDa)

5.47

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 68, 81, 121, 469, 599, 612
AcoI YGGCCR 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 348, 571
AfiI CCNNNNNNNGG 2 cut(s) 70, 101
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 2 cut(s) 184, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 2 cut(s) 267, 548
AluI AGCT 2 cut(s) 267, 548
Alw26I GTCTC 3 cut(s) 20, 290, 593
AlwI GGATC 6 cut(s) 68, 81, 121, 469, 599, 612
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 227
AseI ATTAAT 2 cut(s) 180, 420
Asp700I GAANNNNTTC 1 cut(s) 629
AsuC2I CCSGG 1 cut(s) 71
BalI TGGCCA 1 cut(s) 308
BamHI GGATCC 2 cut(s) 73, 604
BbvI GCAGC 1 cut(s) 214
BccI CCATC 4 cut(s) 85, 308, 419, 641
BciT130I CCWGG 2 cut(s) 186, 585
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 20, 290, 593
BfaI CTAG 7 cut(s) 35, 41, 366, 510, 557, 657, 663
BglII AGATCT 2 cut(s) 37, 434
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 71, 186, 585
BmiI GGNNCC 2 cut(s) 75, 606
BmrFI CCNGG 3 cut(s) 71, 186, 585
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 681
BpuMI CCSGG 1 cut(s) 71
BsaI GGTCTC 2 cut(s) 290, 593
BsaJI CCNNGG 2 cut(s) 185, 498
BsaXI ACNNNNNCTCC 3 cut(s) 271, 301, 670
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 101
Bse1I ACTGG 2 cut(s) 106, 676
BseBI CCWGG 2 cut(s) 186, 585
BseDI CCNNGG 2 cut(s) 185, 498
BseGI GGATG 2 cut(s) 411, 643
BseLI CCNNNNNNNGG 2 cut(s) 70, 101
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 106, 676
BseXI GCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 434
BshFI GGCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 70, 101
BsmAI GTCTC 3 cut(s) 20, 290, 593
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 2 cut(s) 290, 593
Bsp143I GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 75, 606
BspPI GGATC 6 cut(s) 68, 81, 121, 469, 599, 612
BspTNI GGTCTC 2 cut(s) 290, 593
BsrI ACTGG 2 cut(s) 106, 676
BssECI CCNNGG 2 cut(s) 185, 498
BssMI GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 2 cut(s) 186, 585
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 321, 579
BstDEI CTNAG 4 cut(s) 337, 573, 643, 690
BstF5I GGATG 2 cut(s) 411, 643
BstKTI GATC 7 cut(s) 40, 76, 116, 437, 442, 464, 607
BstMAI GTCTC 3 cut(s) 20, 290, 593
BstMBI GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
BstMWI GCNNNNNNNGC 2 cut(s) 236, 626
BstNI CCWGG 2 cut(s) 186, 585
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 69, 184, 583
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 5 cut(s) 37, 73, 434, 461, 604
BstYI RGATCY 5 cut(s) 37, 73, 434, 461, 604
BsuRI GGCC 1 cut(s) 308
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 411, 643
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 321, 579
CaiI CAGNNNCTG 1 cut(s) 29
Csp6I GTAC 2 cut(s) 347, 570
CviAII CATG 4 cut(s) 106, 541, 578, 617
CviJI RGCY 8 cut(s) 239, 267, 286, 308, 323, 519, 548, 560
CviKI_1 RGCY 8 cut(s) 239, 267, 286, 308, 323, 519, 548, 560
CviQI GTAC 2 cut(s) 347, 570
DdeI CTNAG 4 cut(s) 337, 573, 643, 690
DpnI GATC 7 cut(s) 39, 75, 115, 436, 441, 463, 606
DpnII GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 498
Eco31I GGTCTC 2 cut(s) 290, 593
Eco57I CTGAAG 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 184, 583
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 4 cut(s) 109, 544, 581, 620
FaiI YATR 9 cut(s) 47, 107, 197, 470, 491, 522, 542, 579, 618
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 4 cut(s) 105, 540, 577, 616
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 2 cut(s) 398, 650
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 7 cut(s) 35, 41, 366, 510, 557, 657, 663
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 71
Hin1II CATG 4 cut(s) 109, 544, 581, 620
HinfI GANTC 4 cut(s) 6, 203, 398, 404
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 3 cut(s) 25, 403, 439
Hpy188III TCNNGA 6 cut(s) 35, 41, 290, 389, 510, 657
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 2 cut(s) 364, 618
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 4 cut(s) 129, 430, 451, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 626
HpyF3I CTNAG 4 cut(s) 337, 573, 643, 690
Hsp92II CATG 4 cut(s) 109, 544, 581, 620
Kzo9I GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
LmnI GCTCC 2 cut(s) 586, 691
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 541
MaeI CTAG 7 cut(s) 35, 41, 366, 510, 557, 657, 663
MalI GATC 7 cut(s) 39, 75, 115, 436, 441, 463, 606
MboI GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
MboII GAAGA 2 cut(s) 305, 678
MflI RGATCY 5 cut(s) 37, 73, 434, 461, 604
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 329, 360, 393, 505, 513
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 2 cut(s) 197, 407
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 9 cut(s) 22, 96, 106, 132, 213, 297, 465, 466, 595
Mox20I TGGCCA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 629
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 132, 180, 332, 420
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 3 cut(s) 71, 186, 585
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 2 cut(s) 186, 585
MwoI GCNNNNNNNGC 2 cut(s) 236, 626
NciI CCSGG 1 cut(s) 71
NdeII GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
NlaIII CATG 4 cut(s) 109, 544, 581, 620
NlaIV GGNNCC 2 cut(s) 75, 606
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PctI GAATGC 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 2 cut(s) 197, 406
PpsI GAGTC 2 cut(s) 197, 406
PshBI ATTAAT 2 cut(s) 180, 420
Psp6I CCWGG 2 cut(s) 184, 583
PspGI CCWGG 2 cut(s) 184, 583
PspN4I GGNNCC 2 cut(s) 75, 606
PsrI GAACNNNNNNTAC 2 cut(s) 661, 693
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 5 cut(s) 37, 73, 434, 461, 604
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 348, 571
RsaNI GTAC 2 cut(s) 347, 570
SaqAI TTAA 4 cut(s) 132, 180, 332, 420
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 7 cut(s) 37, 73, 113, 434, 439, 461, 604
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 2 cut(s) 197, 407
ScrFI CCNGG 3 cut(s) 71, 186, 585
SetI ASST 7 cut(s) 20, 167, 269, 338, 500, 550, 664
SfaNI GCATC 1 cut(s) 541
SphI GCATGC 1 cut(s) 581
Sse9I AATT 5 cut(s) 329, 360, 393, 505, 513
SspMI CTAG 7 cut(s) 35, 41, 366, 510, 557, 657, 663
StyD4I CCNGG 3 cut(s) 69, 184, 583
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 682
TaqI TCGA 1 cut(s) 98
TasI AATT 5 cut(s) 329, 360, 393, 505, 513
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 4 cut(s) 132, 180, 332, 420
Tru9I TTAA 4 cut(s) 132, 180, 332, 420
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 478
TspRI CASTG 1 cut(s) 123
VspI ATTAAT 2 cut(s) 180, 420
XbaI TCTAGA 4 cut(s) 34, 40, 509, 656
XceI RCATGY 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 7 cut(s) 35, 41, 366, 510, 557, 657, 663
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.