Rh6BG475100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000254
Physical Location & Seq
Forward (+)
68160657 .. 68160959
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG475100.1

Sequence Viewer

Length: 303 bp
ATGATCGAATCTGATTTTGAAGTGCTGGTCAACCTCCTCAATAGCAATGATACTGGTTTACATCCTCTTGATACCTTATTTTCAACCTGCAAAACTCTTCTATTGTCTTTTGATTCTTACTCTATCTATCATGTTCATAGGGAGAGGAACATGGTGGCTGATTGCTTAGCAAAGAGAAGCACAGAGATGGATTTTGGCCCTTTGCATTTACCAAATCCTCCTATCTTTGTCAACCAGATAGTTCAGAATGACATTGATGGCCTTGTTAGGCCTAGATCTTTTGTAACAGCTACGGCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.23

Weight (kDa)

5.08

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 59 2.7e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AgsI TTSAA 2 cut(s) 20, 84
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AoxI GGCC 3 cut(s) 196, 259, 269
AspS9I GGNCC 1 cut(s) 197
BccI CCATC 2 cut(s) 181, 251
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 275
BlpI GCTNAGC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 52
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 26
BshFI GGCC 3 cut(s) 198, 261, 271
BsnI GGCC 3 cut(s) 198, 261, 271
Bsp143I GATC 2 cut(s) 3, 275
Bsp1720I GCTNAGC 1 cut(s) 166
BspANI GGCC 3 cut(s) 198, 261, 271
BspMI ACCTGC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 1 cut(s) 58
BssMI GATC 2 cut(s) 3, 275
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 6, 278
BstMBI GATC 2 cut(s) 3, 275
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuRI GGCC 3 cut(s) 198, 261, 271
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 2 cut(s) 131, 151
CviJI RGCY 6 cut(s) 158, 198, 261, 271, 290, 296
CviKI_1 RGCY 6 cut(s) 158, 198, 261, 271, 290, 296
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 5, 277
DpnII GATC 2 cut(s) 3, 275
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 271
FaeI CATG 2 cut(s) 134, 154
FaiI YATR 3 cut(s) 132, 138, 152
FatI CATG 2 cut(s) 130, 150
FokI GGATG 1 cut(s) 48
FspBI CTAG 1 cut(s) 273
HaeIII GGCC 3 cut(s) 198, 261, 271
Hin1II CATG 2 cut(s) 134, 154
HincII GTYRAC 2 cut(s) 31, 232
HindII GTYRAC 2 cut(s) 31, 232
HinfI GANTC 2 cut(s) 8, 113
Hpy166II GTNNAC 3 cut(s) 31, 59, 232
Hpy188I TCNGA 2 cut(s) 13, 246
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 3 cut(s) 31, 59, 232
HpyCH4V TGCA 2 cut(s) 90, 205
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 2 cut(s) 134, 154
Kzo9I GATC 2 cut(s) 3, 275
LpnPI CCDG 5 cut(s) 11, 39, 100, 248, 282
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 5, 277
MboI GATC 2 cut(s) 3, 275
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 275
MnlI CCTC 5 cut(s) 44, 47, 75, 138, 228
MslI CAYNNNNRTG 1 cut(s) 185
NdeII GATC 2 cut(s) 3, 275
NlaIII CATG 2 cut(s) 134, 154
PceI AGGCCT 1 cut(s) 271
PfeI GAWTC 2 cut(s) 8, 113
PspPI GGNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 185
Sau3AI GATC 2 cut(s) 3, 275
Sau96I GGNCC 1 cut(s) 197
SetI ASST 4 cut(s) 36, 77, 89, 292
SgeI CNNG 9 cut(s) 38, 66, 80, 99, 143, 163, 247, 275, 285
SmiMI CAYNNNNRTG 1 cut(s) 185
SseBI AGGCCT 1 cut(s) 271
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 271
TaqI TCGA 1 cut(s) 6
TfiI GAWTC 2 cut(s) 8, 113
TspDTI ATGAA 1 cut(s) 125
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.