Rorug05G0287300

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000254
Physical Location & Seq
Forward (+)
32985254 .. 32987995
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0287300.1

Sequence Viewer

Length: 1098 bp
ATGAACCCTTACTTGAACATGAAAATCTTCACCCAAACACCACGCGACCTCCACGCACCACCACCACCCTCGCCGGAAATGAAACAAGCCGTGGCAGCCGTGGAGATGATCGTAAGCTACGCATTCAAGAACAAGAGGCTTCTAGAGGAGGCTCTCACCCACCCCTCCCATTCCGACGCTGTGTCGTATCAGCGGCTCGAGTTCGTAGGCGATGCCGTTCTTAGCCTCGCTGTAAGCAACTACCTTTTTCTTGCTTACCCCAGAATTGACCAAGGCAACCTCTCTATGCTACGCTCCGCTAACGTCAGTACCGAGAAGCTCGCACGCGTTGCCGTACGACACGGGCTTTTTCGCTTCCTTCGCCACTCTGCACCTGTTCTCGATGATAAGGTTAGGGAGTTTACTGAAGTTGTCAGTGGAGAAGAAGAGATGCCACTTGTATATAGAGGGTCTGTAAAAGCCCCAAAAGTTCTTGCAGATATTGTGGAGTCTGTGGCTGCTGCTATTTATGTTGATTTGAATTTTGATCTGGAAAAACTTTGGATGATCTTTAGGCATGTTTTGGAGCCTATAGTGACGCTCGAAGACTTGCAGCAACAACCTCAACCCGTGACAAAGTTGTTTGAGGTTTGCCAAAAGCATGGGAAGCATGTCGACATTAAGTATTGGAGGGATGAGACGAAAAGCATTGCGAGTGTGTATGTTGATGGCAAGTTTGTTGCCTCGGGTTCTTCTGAACAGAAAGAAGTTGCCAAGGTCAATGCTGCTGAGATAGCTCTATATAAGTTGTCGAAATTGATGCGCATAGATGATGTGTCGATTGAAGTTATTGCTGGAATTGATGGGTCATTTCATATTGAAGGAGCAAAACATAAGTTGCATGAGCTATGTGGAAAGAAGAAGTGGCCTAAACCAATCTACAACATCAAGCAAGACAAAGGTTCTTCACATGAGAAGAAGTTTGTATCGACAGTTCAAATTGCAACTATTGATGGTGTGCTTTGTATGACGGGAGATGAAATGTCGAGAGTAAAGGATGCAGAGAATTCTGCAGCTTCTTTAATGATCCGTGCTTTGCAAGAGTCTGATTATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

365

Amino Acids

40.98

Weight (kDa)

6.65

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonucleas_3_3 PF14622 44 - 175 4.8e-18 Ribonuclease-III-like
Ribonuclease_3 PF00636 64 - 172 2.6e-22 Ribonuclease III domain
dsrm PF00035 203 - 263 1.4e-08 Double-stranded RNA binding motif
DND1_DSRM PF14709 288 - 360 4.5e-14 double strand RNA binding domain from DEAD END PROTEIN 1
dsrm PF00035 289 - 359 9.7e-13 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 803
AccI GTMKAC 1 cut(s) 654
AccII CGCG 2 cut(s) 45, 327
AciI CCGC 2 cut(s) 193, 297
AclWI GGATC 1 cut(s) 1060
AcsI RAATTY 2 cut(s) 520, 1045
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 2 cut(s) 310, 336
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 6 cut(s) 16, 127, 520, 824, 860, 977
AhdI GACNNNNNGTC 1 cut(s) 181
AluBI AGCT 5 cut(s) 117, 319, 776, 886, 1055
AluI AGCT 5 cut(s) 117, 319, 776, 886, 1055
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 1 cut(s) 1060
Ama87I CYCGRG 2 cut(s) 197, 724
AoxI GGCC 1 cut(s) 905
ApeKI GCWGC 6 cut(s) 95, 497, 500, 592, 764, 1052
ApoI RAATTY 2 cut(s) 520, 1045
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 804
AsuHPI GGTGA 2 cut(s) 22, 148
AvaI CYCGRG 2 cut(s) 197, 724
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 6 cut(s) 107, 484, 487, 604, 751, 1064
BccI CCATC 3 cut(s) 701, 836, 986
BceAI ACGGC 4 cut(s) 74, 83, 200, 317
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 2 cut(s) 570, 1050
BisI GCNGC 7 cut(s) 96, 194, 498, 501, 593, 765, 1053
BlsI GCNGC 7 cut(s) 97, 195, 499, 502, 594, 766, 1054
BmeRI GACNNNNNGTC 1 cut(s) 181
BmeT110I CYCGRG 2 cut(s) 197, 724
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 4 cut(s) 202, 420, 789, 1027
BpiI GAAGAC 1 cut(s) 591
BsaJI CCNNGG 5 cut(s) 90, 99, 271, 723, 753
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse3DI GCAATG 1 cut(s) 687
BseDI CCNNGG 5 cut(s) 90, 99, 271, 723, 753
BseGI GGATG 3 cut(s) 549, 679, 1042
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 759
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 6 cut(s) 107, 484, 487, 604, 751, 1064
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 2 cut(s) 45, 327
BshFI GGCC 1 cut(s) 907
BsiHKCI CYCGRG 2 cut(s) 197, 724
BsiSI CCGG 1 cut(s) 74
BsiWI CGTACG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 671
BsmBI CGTCTC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 1 cut(s) 907
BsoBI CYCGRG 2 cut(s) 197, 724
Bsp143I GATC 4 cut(s) 108, 526, 546, 1065
BspACI CCGC 2 cut(s) 193, 297
BspANI GGCC 1 cut(s) 907
BspCNI CTCAG 1 cut(s) 760
BspFNI CGCG 2 cut(s) 45, 327
BspLI GGNNCC 1 cut(s) 567
BspMAI CTGCAG 1 cut(s) 1054
BspPI GGATC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 687
BssECI CCNNGG 5 cut(s) 90, 99, 271, 723, 753
BssMI GATC 4 cut(s) 108, 526, 546, 1065
BssT1I CCWWGG 2 cut(s) 271, 753
Bst4CI ACNGT 1 cut(s) 973
Bst6I CTCTTC 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 321, 325
BstDEI CTNAG 2 cut(s) 221, 768
BstDSI CCRYGG 2 cut(s) 90, 99
BstF5I GGATG 3 cut(s) 549, 679, 1042
BstFNI CGCG 2 cut(s) 45, 327
BstHHI GCGC 1 cut(s) 804
BstKTI GATC 4 cut(s) 111, 529, 549, 1068
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 4 cut(s) 108, 526, 546, 1065
BstMWI GCNNNNNNNGC 5 cut(s) 95, 329, 360, 646, 773
BstNSI RCATGY 2 cut(s) 560, 653
BstSFI CTRYAG 2 cut(s) 570, 1050
BstUI CGCG 2 cut(s) 45, 327
BstV1I GCAGC 6 cut(s) 107, 484, 487, 604, 751, 1064
BstV2I GAAGAC 1 cut(s) 591
BstXI CCANNNNNNTGG 1 cut(s) 641
BsuRI GGCC 1 cut(s) 907
BtgI CCRYGG 2 cut(s) 90, 99
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 549, 679, 1042
BtsIMutI CAGTG 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 321, 325
CfoI GCGC 1 cut(s) 804
CseI GACGC 2 cut(s) 185, 586
Csp6I GTAC 2 cut(s) 309, 335
CviAII CATG 6 cut(s) 19, 557, 641, 650, 881, 950
CviQI GTAC 2 cut(s) 309, 335
DdeI CTNAG 2 cut(s) 221, 768
DpnI GATC 4 cut(s) 110, 528, 548, 1067
DpnII GATC 4 cut(s) 108, 526, 546, 1065
DriI GACNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 420
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 420
Eco130I CCWWGG 2 cut(s) 271, 753
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 197, 724
EcoRI GAATTC 1 cut(s) 1045
EcoT14I CCWWGG 2 cut(s) 271, 753
ErhI CCWWGG 2 cut(s) 271, 753
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 6 cut(s) 22, 560, 644, 653, 884, 953
FatI CATG 6 cut(s) 18, 556, 640, 649, 880, 949
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 7 cut(s) 96, 194, 498, 501, 593, 765, 1053
FokI GGATG 3 cut(s) 556, 686, 1049
Fsp4HI GCNGC 7 cut(s) 96, 194, 498, 501, 593, 765, 1053
FspAI RTGCGCAY 1 cut(s) 803
FspBI CTAG 1 cut(s) 143
FspI TGCGCA 1 cut(s) 803
GlaI GCGC 1 cut(s) 803
GluI GCNGC 7 cut(s) 96, 194, 498, 501, 593, 765, 1053
HaeIII GGCC 1 cut(s) 907
HapII CCGG 1 cut(s) 74
HgaI GACGC 2 cut(s) 185, 586
HhaI GCGC 1 cut(s) 804
Hin1II CATG 6 cut(s) 22, 560, 644, 653, 884, 953
Hin6I GCGC 1 cut(s) 802
HinP1I GCGC 1 cut(s) 802
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 2 cut(s) 488, 1082
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 22, 148
Hpy166II GTNNAC 2 cut(s) 402, 655
Hpy188I TCNGA 3 cut(s) 175, 736, 1087
Hpy188III TCNNGA 5 cut(s) 127, 143, 380, 530, 1026
Hpy8I GTNNAC 2 cut(s) 402, 655
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 368, 854
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 371, 476, 592, 880, 983, 1040, 1052, 1078
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 329, 360, 646, 773
HpyF3I CTNAG 2 cut(s) 221, 768
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 6 cut(s) 22, 560, 644, 653, 884, 953
HspAI GCGC 1 cut(s) 802
Kzo9I GATC 4 cut(s) 108, 526, 546, 1065
LmnI GCTCC 3 cut(s) 299, 565, 863
LpnPI CCDG 5 cut(s) 87, 274, 387, 515, 819
Lsp1109I GCAGC 6 cut(s) 107, 484, 487, 604, 751, 1064
LweI GCATC 4 cut(s) 202, 420, 789, 1027
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 574, 610
MalI GATC 4 cut(s) 110, 528, 548, 1067
MboI GATC 4 cut(s) 108, 526, 546, 1065
MboII GAAGA 8 cut(s) 19, 434, 437, 596, 723, 910, 936, 967
MluCI AATT 6 cut(s) 264, 520, 794, 837, 978, 1045
MluI ACGCGT 1 cut(s) 325
MlyI GAGTC 2 cut(s) 497, 1091
MmeI TCCRAC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 660, 1061
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 122
MvnI CGCG 2 cut(s) 45, 327
MwoI GCNNNNNNNGC 5 cut(s) 95, 329, 360, 646, 773
NdeII GATC 4 cut(s) 108, 526, 546, 1065
NlaIII CATG 6 cut(s) 22, 560, 644, 653, 884, 953
NlaIV GGNNCC 1 cut(s) 567
NmuCI GTSAC 2 cut(s) 574, 610
NsbI TGCGCA 1 cut(s) 803
NspI RCATGY 2 cut(s) 560, 653
PaeR7I CTCGAG 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 26
Pfl23II CGTACG 1 cut(s) 334
PkrI GCNGC 7 cut(s) 97, 195, 499, 502, 594, 766, 1054
PleI GAGTC 2 cut(s) 496, 1090
PpsI GAGTC 2 cut(s) 496, 1090
PspLI CGTACG 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 567
PspXI VCTCGAGB 1 cut(s) 197
PsrI GAACNNNNNNTAC 2 cut(s) 957, 989
PstI CTGCAG 1 cut(s) 1054
RsaI GTAC 2 cut(s) 310, 336
RsaNI GTAC 2 cut(s) 309, 335
SalI GTCGAC 1 cut(s) 653
SaqAI TTAA 2 cut(s) 660, 1061
SatI GCNGC 7 cut(s) 96, 194, 498, 501, 593, 765, 1053
Sau3AI GATC 4 cut(s) 108, 526, 546, 1065
SchI GAGTC 2 cut(s) 497, 1091
SfaNI GCATC 4 cut(s) 202, 420, 789, 1027
SfcI CTRYAG 2 cut(s) 570, 1050
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 6 cut(s) 264, 520, 794, 837, 978, 1045
SsiI CCGC 2 cut(s) 193, 297
SspMI CTAG 1 cut(s) 143
StyI CCWWGG 2 cut(s) 271, 753
TaaI ACNGT 1 cut(s) 973
TaiI ACGT 1 cut(s) 306
TaqI TCGA 8 cut(s) 198, 381, 582, 654, 791, 818, 968, 1025
TasI AATT 6 cut(s) 264, 520, 794, 837, 978, 1045
TauI GCSGC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 660, 1061
Tru9I TTAA 2 cut(s) 660, 1061
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 2 cut(s) 574, 610
TseI GCWGC 6 cut(s) 95, 497, 500, 592, 764, 1052
Tsp45I GTSAC 2 cut(s) 574, 610
TspDTI ATGAA 5 cut(s) 17, 35, 95, 842, 1032
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 1 cut(s) 421
XapI RAATTY 2 cut(s) 520, 1045
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 2 cut(s) 560, 653
XhoI CTCGAG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.