RchiOBHm_Chr1g0322281

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000254
Physical Location & Seq
Forward (+)
9692822 .. 9693423
602 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55230

Sequence Viewer

Length: 519 bp
ATGTCAAGGACTAGGTCCTCATCCACTGGCAAAATTGGTGCTGGTGGTGTTATCAGAGATCAGCTTGGCAATTGGATCACTGGATTCCAAGTGAATTTGGGAACTGGAGAAATCCTTGATGCTGAAGCTTGGGGCTTACTCTATGGTCTTAAACTAGTCTTGAACCTCCATATCTCTCACCTTGAAGTTGAGTCTGATTCTGCCATCCTTGTGCAGCTAATGCAAAAAGCTGAATTCTCCCTCCATCCCCTTGGTTCTCTCCTCAAGGGCTGCTCAAATATCATGGATGCTATGGAAAATGCTCACCTTTCTCACATCTTCAGAGAGTGCAATATGACTGCTGACTGCTTGGCTAAGGACAGCATCAATCATGAGCTTGGTACCATCATCTTTGAGTACCCCCCCCCCCCATTCATGATGCGCAGGCATATCTTAATGACATCTCTGCTGTTTCTAGAGCAAGGAGGAGCTCCTGCTCTAATTCTTAGCCTTTTTGTTGTTTTTGTTTGGGTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

172

Amino Acids

19.0

Weight (kDa)

5.74

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 120 1.1e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 422
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 94, 233
AcuI CTGAAG 2 cut(s) 144, 304
AfaI GTAC 2 cut(s) 382, 398
AgsI TTSAA 2 cut(s) 163, 185
AhlI ACTAGT 1 cut(s) 154
AluBI AGCT 6 cut(s) 64, 128, 217, 230, 376, 470
AluI AGCT 6 cut(s) 64, 128, 217, 230, 376, 470
Alw21I GWGCWC 1 cut(s) 472
AlwI GGATC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 214, 270
ApoI RAATTY 2 cut(s) 94, 233
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 170, 296
AvaII GGWCC 1 cut(s) 15
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 226, 257
BccI CCATC 3 cut(s) 212, 252, 392
BcuI ACTAGT 1 cut(s) 154
BfaI CTAG 3 cut(s) 12, 155, 455
BisI GCNGC 2 cut(s) 215, 271
BlsI GCNGC 2 cut(s) 216, 272
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 4 cut(s) 109, 277, 372, 408
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 31, 85, 109
BseDI CCNNGG 1 cut(s) 250
BseGI GGATG 4 cut(s) 20, 204, 244, 292
BseNI ACTGG 3 cut(s) 31, 85, 109
BseRI GAGGAG 2 cut(s) 251, 480
BseXI GCAGC 2 cut(s) 226, 257
BsgI GTGCAG 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 2 cut(s) 58, 75
BspHI TCATGA 2 cut(s) 370, 414
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 380
BsrI ACTGG 3 cut(s) 31, 85, 109
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 2 cut(s) 58, 75
BssT1I CCWWGG 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 354, 485
BstF5I GGATG 4 cut(s) 20, 204, 244, 292
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 2 cut(s) 61, 78
BstMBI GATC 2 cut(s) 58, 75
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 226, 257
BstXI CCANNNNNNTGG 1 cut(s) 251
BtsCI GGATG 4 cut(s) 20, 204, 244, 292
BtsIMutI CAGTG 2 cut(s) 24, 78
Cac8I GCNNGC 1 cut(s) 425
CciI TCATGA 2 cut(s) 370, 414
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 381, 397
CviAII CATG 3 cut(s) 283, 371, 415
CviQI GTAC 2 cut(s) 381, 397
DdeI CTNAG 2 cut(s) 354, 485
DpnI GATC 2 cut(s) 60, 77
DpnII GATC 2 cut(s) 58, 75
Ecl136II GAGCTC 1 cut(s) 470
Eco130I CCWWGG 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 470
Eco57I CTGAAG 2 cut(s) 144, 304
EcoICRI GAGCTC 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 15
EcoRI GAATTC 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 286, 374, 418
FaiI YATR 8 cut(s) 144, 171, 284, 293, 335, 372, 416, 429
FatI CATG 3 cut(s) 282, 370, 414
Fnu4HI GCNGC 2 cut(s) 215, 271
FokI GGATG 4 cut(s) 7, 191, 231, 299
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 2 cut(s) 215, 271
FspBI CTAG 3 cut(s) 12, 155, 455
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 215, 271
GsuI CTGGAG 1 cut(s) 126
HhaI GCGC 1 cut(s) 423
Hin1II CATG 3 cut(s) 286, 374, 418
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 3 cut(s) 84, 191, 197
HphI GGTGA 2 cut(s) 170, 296
Hpy188I TCNGA 3 cut(s) 56, 196, 323
Hpy188III TCNNGA 4 cut(s) 160, 371, 415, 455
HpyCH4V TGCA 3 cut(s) 214, 223, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 354, 485
Hsp92II CATG 3 cut(s) 286, 374, 418
HspAI GCGC 1 cut(s) 421
KpnI GGTACC 1 cut(s) 384
Kzo9I GATC 2 cut(s) 58, 75
LmnI GCTCC 2 cut(s) 467, 475
LpnPI CCDG 6 cut(s) 12, 27, 66, 90, 409, 486
Lsp1109I GCAGC 2 cut(s) 226, 257
LweI GCATC 4 cut(s) 109, 277, 372, 408
MaeI CTAG 3 cut(s) 12, 155, 455
MalI GATC 2 cut(s) 60, 77
MboI GATC 2 cut(s) 58, 75
MboII GAAGA 1 cut(s) 310
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 5 cut(s) 33, 70, 94, 233, 480
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 28, 176, 251, 272, 458
MseI TTAA 2 cut(s) 150, 434
MslI CAYNNNNRTG 1 cut(s) 209
MunI CAATTG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 2 cut(s) 58, 75
NlaIII CATG 3 cut(s) 286, 374, 418
NlaIV GGNNCC 1 cut(s) 382
NsbI TGCGCA 1 cut(s) 422
PagI TCATGA 2 cut(s) 370, 414
PfeI GAWTC 2 cut(s) 84, 197
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 216, 272
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 472
Psp5II RGGWCCY 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 2 cut(s) 382, 398
RsaNI GTAC 2 cut(s) 381, 397
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 472
SaqAI TTAA 2 cut(s) 150, 434
SatI GCNGC 2 cut(s) 215, 271
Sau3AI GATC 2 cut(s) 58, 75
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 4 cut(s) 109, 277, 372, 408
SinI GGWCC 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 154
Sse9I AATT 5 cut(s) 33, 70, 94, 233, 480
SspMI CTAG 3 cut(s) 12, 155, 455
SstI GAGCTC 1 cut(s) 472
StyI CCWWGG 1 cut(s) 250
TasI AATT 5 cut(s) 33, 70, 94, 233, 480
TfiI GAWTC 2 cut(s) 84, 197
Tru1I TTAA 2 cut(s) 150, 434
Tru9I TTAA 2 cut(s) 150, 434
TscAI CASTG 2 cut(s) 31, 85
TseI GCWGC 2 cut(s) 214, 270
TspDTI ATGAA 1 cut(s) 403
TspRI CASTG 2 cut(s) 31, 85
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 2 cut(s) 94, 233
XbaI TCTAGA 1 cut(s) 454
XspI CTAG 3 cut(s) 12, 155, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.