Rmu_sc0000496.1_g000011

(R)-mandelonitrile lyase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000496.1
OG0000254
Physical Location & Seq
Reverse (-)
44756 .. 48879
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000496.1_g000011.1.cds

Sequence Viewer

Length: 849 bp
atgcttaagacctatattaagtgtagtattgtcagctttcaaaatacctggaatatcactttgattcacattgtcaacttctgcaagaaagcctgcaaacttgccaatgcccaacacctctccttctcatctgaagatggtgttccaaatgtccgaggacgcattcttggaggcagcagggccatgaatgctggggcttacattgaatcagcctccactgtcatccaatttgcatccccagcccctactgtggtcactctcatggagaagattctcgggccggtctctgctggttctttgaggctggcttcaactgatgtcaaggtgaatcctatcattcaattcaattacttcaacagcccagtggtcagtggatgtgatgttctcaggaccaagtctatggatgatttcaagttccagggatggtttgggaataaggattttaggggctgcatcaccgctgttgctggtgatttcctcatcattggtatagatgcactccgtacttttggtatatcaccagggacaaatcctcaggctacccttctgatgcttggaagattaaagcttgccttaaagcataatattgccaatcttaaggttgaatctgattctgctgtccttgtacaacttatgcaatcatcaaacactggccttcatccccttggctctttgcttgatggttgtgctatattgatggccaaatttcagattgtcaagctggctcacatctttagggaatgcaatatgactgcggatgcccttgccaagaatagcattgatcatgagcttggactgatcacctttgatgatccccctattcatgttgcccaagcttttcttagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko01110 map00460 map01110
Pfam Domains
Protein Families
GMC_oxred_C GMC_oxred_N

Protein Analysis

282

Amino Acids

30.56

Weight (kDa)

8.97

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 459, 755
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 505, 627
AfiI CCNNNNNNNGG 1 cut(s) 250
AflII CTTAAG 2 cut(s) 5, 596
AgsI TTSAA 8 cut(s) 41, 206, 312, 341, 346, 355, 412, 605
AjnI CCWGG 3 cut(s) 47, 417, 520
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 5 cut(s) 36, 568, 721, 790, 836
AluI AGCT 5 cut(s) 36, 568, 721, 790, 836
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 4 cut(s) 180, 278, 652, 699
ApeKI GCWGC 2 cut(s) 174, 450
ApoI RAATTY 1 cut(s) 704
AspS9I GGNCC 3 cut(s) 180, 278, 390
AsuHPI GGTGA 5 cut(s) 337, 448, 482, 510, 793
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 390
AxyI CCTNAGG 1 cut(s) 534
BalI TGGCCA 1 cut(s) 701
BbvI GCAGC 2 cut(s) 186, 437
BccI CCATC 4 cut(s) 131, 417, 674, 691
BciT130I CCWGG 3 cut(s) 49, 419, 522
BclI TGATCA 2 cut(s) 781, 798
BcoDI GTCTC 1 cut(s) 289
BfrI CTTAAG 2 cut(s) 5, 596
BisI GCNGC 2 cut(s) 175, 451
BlsI GCNGC 2 cut(s) 176, 452
Bme1390I CCNGG 3 cut(s) 49, 419, 522
Bme18I GGWCC 1 cut(s) 390
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 3 cut(s) 180, 278, 390
BmrFI CCNGG 3 cut(s) 49, 419, 522
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 5 cut(s) 242, 462, 484, 540, 748
BmuI ACTGGG 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 154, 418, 521, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 362, 655
Bse21I CCTNAGG 1 cut(s) 534
BseBI CCWGG 3 cut(s) 49, 419, 522
BseDI CCNNGG 4 cut(s) 154, 418, 521, 664
BseGI GGATG 7 cut(s) 222, 233, 380, 409, 428, 658, 763
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 400, 548
BseNI ACTGG 2 cut(s) 362, 655
BseXI GCAGC 2 cut(s) 186, 437
BseYI CCCAGC 2 cut(s) 191, 238
BshFI GGCC 4 cut(s) 182, 280, 654, 701
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 3 cut(s) 162, 193, 746
BsnI GGCC 4 cut(s) 182, 280, 654, 701
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 275
Bsp1407I TGTACA 1 cut(s) 625
Bsp143I GATC 3 cut(s) 781, 798, 811
BspACI CCGC 2 cut(s) 459, 755
BspANI GGCC 4 cut(s) 182, 280, 654, 701
BspCNI CTCAG 2 cut(s) 399, 547
BspHI TCATGA 1 cut(s) 784
BspPI GGATC 1 cut(s) 806
BspTI CTTAAG 2 cut(s) 5, 596
BspTNI GGTCTC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 625
BsrI ACTGG 2 cut(s) 362, 655
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 154, 418, 521, 664
BssMI GATC 3 cut(s) 781, 798, 811
BssT1I CCWWGG 1 cut(s) 664
Bst2UI CCWGG 3 cut(s) 49, 419, 522
Bst4CI ACNGT 2 cut(s) 220, 250
BstAFI CTTAAG 2 cut(s) 5, 596
BstAUI TGTACA 1 cut(s) 625
BstC8I GCNNGC 4 cut(s) 94, 306, 570, 723
BstDEI CTNAG 3 cut(s) 386, 534, 842
BstF5I GGATG 7 cut(s) 222, 233, 380, 409, 428, 658, 763
BstKTI GATC 3 cut(s) 784, 801, 814
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 3 cut(s) 781, 798, 811
BstMWI GCNNNNNNNGC 2 cut(s) 188, 239
BstNI CCWGG 3 cut(s) 49, 419, 522
BstSCI CCNGG 3 cut(s) 47, 417, 520
BstV1I GCAGC 2 cut(s) 186, 437
BstXI CCANNNNNNTGG 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 534
BsuRI GGCC 4 cut(s) 182, 280, 654, 701
BtsCI GGATG 7 cut(s) 222, 233, 380, 409, 428, 658, 763
BtsIMutI CAGTG 4 cut(s) 216, 369, 376, 648
Cac8I GCNNGC 4 cut(s) 94, 306, 570, 723
CciI TCATGA 1 cut(s) 784
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 180, 278, 390
CseI GACGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 504, 626
CviAII CATG 4 cut(s) 184, 262, 785, 824
CviQI GTAC 2 cut(s) 504, 626
DdeI CTNAG 3 cut(s) 386, 534, 842
DpnI GATC 3 cut(s) 783, 800, 813
DpnII GATC 3 cut(s) 781, 798, 811
EaeI YGGCCR 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 153
Eco81I CCTNAGG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 47, 417, 520
EcoT14I CCWWGG 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 4 cut(s) 187, 265, 788, 827
FalI AAGNNNNNCTT 3 cut(s) 557, 589, 825
FaqI GGGAC 1 cut(s) 538
FatI CATG 4 cut(s) 183, 261, 784, 823
FbaI TGATCA 2 cut(s) 781, 798
Fnu4HI GCNGC 2 cut(s) 175, 451
FokI GGATG 7 cut(s) 209, 220, 387, 416, 435, 645, 770
Fsp4HI GCNGC 2 cut(s) 175, 451
GluI GCNGC 2 cut(s) 175, 451
GsaI CCCAGC 2 cut(s) 195, 242
HaeIII GGCC 4 cut(s) 182, 280, 654, 701
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 168
Hin1II CATG 4 cut(s) 187, 265, 788, 827
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 566, 834
HinfI GANTC 6 cut(s) 64, 206, 271, 328, 605, 611
HpaII CCGG 1 cut(s) 281
HphI GGTGA 5 cut(s) 337, 448, 482, 510, 793
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 5 cut(s) 133, 155, 549, 610, 711
Hpy188III TCNNGA 2 cut(s) 388, 785
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 3 cut(s) 133, 554, 665
HpyCH4III ACNGT 2 cut(s) 220, 250
HpyCH4V TGCA 7 cut(s) 84, 96, 233, 453, 497, 637, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 239
HpyF3I CTNAG 3 cut(s) 386, 534, 842
Hsp92II CATG 4 cut(s) 187, 265, 788, 827
Ksp22I TGATCA 2 cut(s) 781, 798
Kzo9I GATC 3 cut(s) 781, 798, 811
Lsp1109I GCAGC 2 cut(s) 186, 437
LweI GCATC 5 cut(s) 242, 462, 484, 540, 748
MaeIII GTNAC 1 cut(s) 253
MalI GATC 3 cut(s) 783, 800, 813
MboI GATC 3 cut(s) 781, 798, 811
MboII GAAGA 3 cut(s) 146, 280, 570
MlsI TGGCCA 1 cut(s) 701
MluCI AATT 4 cut(s) 227, 341, 346, 704
MluNI TGGCCA 1 cut(s) 701
MnlI CCTC 7 cut(s) 128, 149, 164, 223, 294, 488, 543
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 5 cut(s) 6, 18, 563, 575, 597
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 461
MspCI CTTAAG 2 cut(s) 5, 596
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 49, 419, 522
Mva1269I GAATGC 3 cut(s) 162, 193, 746
MvaI CCWGG 3 cut(s) 49, 419, 522
MwoI GCNNNNNNNGC 2 cut(s) 188, 239
NdeII GATC 3 cut(s) 781, 798, 811
NlaIII CATG 4 cut(s) 187, 265, 788, 827
NmuCI GTSAC 1 cut(s) 253
PagI TCATGA 1 cut(s) 784
PctI GAATGC 3 cut(s) 162, 193, 746
PfeI GAWTC 6 cut(s) 64, 206, 271, 328, 605, 611
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 176, 452
Psp6I CCWGG 3 cut(s) 47, 417, 520
PspFI CCCAGC 2 cut(s) 191, 238
PspGI CCWGG 3 cut(s) 47, 417, 520
PspPI GGNCC 3 cut(s) 180, 278, 390
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 2 cut(s) 505, 627
RsaNI GTAC 2 cut(s) 504, 626
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 5 cut(s) 6, 18, 563, 575, 597
SatI GCNGC 2 cut(s) 175, 451
Sau3AI GATC 3 cut(s) 781, 798, 811
Sau96I GGNCC 3 cut(s) 180, 278, 390
ScrFI CCNGG 3 cut(s) 49, 419, 522
SfaNI GCATC 5 cut(s) 242, 462, 484, 540, 748
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 5, 596
SmoI CTYRAG 2 cut(s) 5, 596
Sse9I AATT 4 cut(s) 227, 341, 346, 704
SsiI CCGC 2 cut(s) 459, 755
SspI AATATT 1 cut(s) 586
StyD4I CCNGG 3 cut(s) 47, 417, 520
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 2 cut(s) 220, 250
TasI AATT 4 cut(s) 227, 341, 346, 704
TatI WGTACW 1 cut(s) 625
TfiI GAWTC 6 cut(s) 64, 206, 271, 328, 605, 611
Tru1I TTAA 5 cut(s) 6, 18, 563, 575, 597
Tru9I TTAA 5 cut(s) 6, 18, 563, 575, 597
TscAI CASTG 4 cut(s) 223, 369, 376, 655
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 2 cut(s) 174, 450
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 200, 647, 812
TspGWI ACGGA 1 cut(s) 491
TspRI CASTG 4 cut(s) 223, 369, 376, 655
Tth111I GACNNNGTC 1 cut(s) 394
Vha464I CTTAAG 2 cut(s) 5, 596
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.