Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 5 - 110 | 5.3e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 20 |
| AccI | GTMKAC | 1 cut(s) | 286 |
| AclWI | GGATC | 3 cut(s) | 21, 313, 326 |
| AgsI | TTSAA | 4 cut(s) | 137, 163, 181, 308 |
| AluBI | AGCT | 3 cut(s) | 53, 140, 193 |
| AluI | AGCT | 3 cut(s) | 53, 140, 193 |
| AlwI | GGATC | 3 cut(s) | 21, 313, 326 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 446 |
| AoxI | GGCC | 1 cut(s) | 443 |
| AspS9I | GGNCC | 1 cut(s) | 443 |
| AsuHPI | GGTGA | 1 cut(s) | 325 |
| AsuII | TTCGAA | 1 cut(s) | 418 |
| AxyI | CCTNAGG | 1 cut(s) | 447 |
| BamHI | GGATCC | 1 cut(s) | 318 |
| BanI | GGYRCC | 1 cut(s) | 20 |
| BccI | CCATC | 2 cut(s) | 11, 233 |
| BfaI | CTAG | 4 cut(s) | 141, 156, 194, 387 |
| BmgT120I | GGNCC | 1 cut(s) | 443 |
| BmiI | GGNNCC | 2 cut(s) | 22, 320 |
| BmsI | GCATC | 1 cut(s) | 138 |
| Bpu14I | TTCGAA | 1 cut(s) | 418 |
| Bse21I | CCTNAGG | 1 cut(s) | 447 |
| BseGI | GGATG | 3 cut(s) | 22, 153, 256 |
| BseMII | CTCAG | 1 cut(s) | 438 |
| BseRI | GAGGAG | 1 cut(s) | 442 |
| BshFI | GGCC | 1 cut(s) | 445 |
| BshNI | GGYRCC | 1 cut(s) | 20 |
| BsnI | GGCC | 1 cut(s) | 445 |
| Bsp119I | TTCGAA | 1 cut(s) | 418 |
| Bsp143I | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| BspANI | GGCC | 1 cut(s) | 445 |
| BspCNI | CTCAG | 1 cut(s) | 439 |
| BspLI | GGNNCC | 2 cut(s) | 22, 320 |
| BspPI | GGATC | 3 cut(s) | 21, 313, 326 |
| BspQI | GCTCTTC | 1 cut(s) | 415 |
| BspT104I | TTCGAA | 1 cut(s) | 418 |
| BspT107I | GGYRCC | 1 cut(s) | 20 |
| BssMI | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| Bst6I | CTCTTC | 1 cut(s) | 415 |
| BstBI | TTCGAA | 1 cut(s) | 418 |
| BstDEI | CTNAG | 2 cut(s) | 109, 447 |
| BstF5I | GGATG | 3 cut(s) | 22, 153, 256 |
| BstKTI | GATC | 5 cut(s) | 29, 73, 321, 342, 406 |
| BstMBI | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| BstX2I | RGATCY | 2 cut(s) | 26, 318 |
| BstYI | RGATCY | 2 cut(s) | 26, 318 |
| Bsu36I | CCTNAGG | 1 cut(s) | 447 |
| BsuRI | GGCC | 1 cut(s) | 445 |
| BtsCI | GGATG | 3 cut(s) | 22, 153, 256 |
| BtsIMutI | CAGTG | 1 cut(s) | 396 |
| CaiI | CAGNNNCTG | 1 cut(s) | 446 |
| Cfr13I | GGNCC | 1 cut(s) | 443 |
| CviAII | CATG | 3 cut(s) | 11, 337, 380 |
| CviJI | RGCY | 6 cut(s) | 53, 61, 140, 193, 445, 453 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 61, 140, 193, 445, 453 |
| DdeI | CTNAG | 2 cut(s) | 109, 447 |
| DpnI | GATC | 5 cut(s) | 28, 72, 320, 341, 405 |
| DpnII | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| Eam1104I | CTCTTC | 1 cut(s) | 415 |
| EarI | CTCTTC | 1 cut(s) | 415 |
| Eco81I | CCTNAGG | 1 cut(s) | 447 |
| EcoO109I | RGGNCCY | 1 cut(s) | 443 |
| FaeI | CATG | 3 cut(s) | 14, 340, 383 |
| FaiI | YATR | 7 cut(s) | 12, 104, 251, 327, 338, 348, 381 |
| FatI | CATG | 3 cut(s) | 10, 336, 379 |
| FblI | GTMKAC | 1 cut(s) | 286 |
| FokI | GGATG | 3 cut(s) | 29, 160, 243 |
| FspBI | CTAG | 4 cut(s) | 141, 156, 194, 387 |
| HaeIII | GGCC | 1 cut(s) | 445 |
| Hin1II | CATG | 3 cut(s) | 14, 340, 383 |
| HinfI | GANTC | 2 cut(s) | 203, 209 |
| HphI | GGTGA | 1 cut(s) | 325 |
| Hpy166II | GTNNAC | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 2 cut(s) | 175, 208 |
| Hpy188III | TCNNGA | 2 cut(s) | 156, 187 |
| Hpy8I | GTNNAC | 1 cut(s) | 287 |
| HpyAV | CCTTC | 1 cut(s) | 180 |
| HpyCH4V | TGCA | 1 cut(s) | 411 |
| HpyF3I | CTNAG | 2 cut(s) | 109, 447 |
| Hsp92II | CATG | 3 cut(s) | 14, 340, 383 |
| Kzo9I | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| LguI | GCTCTTC | 1 cut(s) | 415 |
| LmnI | GCTCC | 1 cut(s) | 50 |
| LpnPI | CCDG | 7 cut(s) | 24, 37, 39, 78, 172, 335, 426 |
| LweI | GCATC | 1 cut(s) | 138 |
| MaeI | CTAG | 4 cut(s) | 141, 156, 194, 387 |
| MaeIII | GTNAC | 1 cut(s) | 266 |
| MalI | GATC | 5 cut(s) | 28, 72, 320, 341, 405 |
| MboI | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| MboII | GAAGA | 3 cut(s) | 320, 407, 432 |
| MflI | RGATCY | 2 cut(s) | 26, 318 |
| MluCI | AATT | 1 cut(s) | 63 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MnlI | CCTC | 4 cut(s) | 381, 387, 420, 442 |
| MseI | TTAA | 1 cut(s) | 225 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| NdeII | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| NlaIII | CATG | 3 cut(s) | 14, 340, 383 |
| NlaIV | GGNNCC | 2 cut(s) | 22, 320 |
| NspV | TTCGAA | 1 cut(s) | 418 |
| PciSI | GCTCTTC | 1 cut(s) | 415 |
| PfeI | GAWTC | 1 cut(s) | 203 |
| PleI | GAGTC | 1 cut(s) | 203 |
| PpsI | GAGTC | 1 cut(s) | 203 |
| PspN4I | GGNNCC | 2 cut(s) | 22, 320 |
| PspPI | GGNCC | 1 cut(s) | 443 |
| PstNI | CAGNNNCTG | 1 cut(s) | 446 |
| PsuI | RGATCY | 2 cut(s) | 26, 318 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SapI | GCTCTTC | 1 cut(s) | 415 |
| SaqAI | TTAA | 1 cut(s) | 225 |
| Sau3AI | GATC | 5 cut(s) | 26, 70, 318, 339, 403 |
| Sau96I | GGNCC | 1 cut(s) | 443 |
| SchI | GAGTC | 1 cut(s) | 203 |
| SetI | ASST | 4 cut(s) | 55, 142, 195, 268 |
| SfaNI | GCATC | 1 cut(s) | 138 |
| SfuI | TTCGAA | 1 cut(s) | 418 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| Sse9I | AATT | 1 cut(s) | 63 |
| SspMI | CTAG | 4 cut(s) | 141, 156, 194, 387 |
| TaqI | TCGA | 2 cut(s) | 342, 418 |
| TasI | AATT | 1 cut(s) | 63 |
| TfiI | GAWTC | 1 cut(s) | 203 |
| Tru1I | TTAA | 1 cut(s) | 225 |
| Tru9I | TTAA | 1 cut(s) | 225 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 403 |
| XbaI | TCTAGA | 1 cut(s) | 155 |
| XmiI | GTMKAC | 1 cut(s) | 286 |
| XspI | CTAG | 4 cut(s) | 141, 156, 194, 387 |