Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000254

Physical Location & Seq

Genomic Coordinates Forward (+)

42529962 .. 42533298

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0341600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCAGGAGTCGGACCAATCTCACAGGACTGGGAACCCGTCGTAATCCGGAAGAAGGCACCCAACGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCTGCTCGCCGTGCCGGCGCCGAGATCGAAACCGTCAAGAAAGCTACTGCTGGACTTAACAAGGCTGCCTCCAGCAGCACTTCTCTAAACACAAGGAAGCTCGATGAGGAAACAGAAGTTCTTGCTCATGAGCGTGTTCCAAGTGAGCTGAAGAAAGCTATTATGCAAGCTCGTATGGATAAGAAGCTTACTCAGGCTCAGCTTGCACAAATTATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAATCCGGGAAAGCTATTCCAAACCAACAGGTAATTGGCAAGTTAGAGAGAGCTCTGGGAGCTAAACTGCGGGGAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

142

Amino Acids

15.44

Weight (kDa)

9.91

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	9 - 79	2.6e-24	Multiprotein bridging factor 1
HTH_3	PF01381	87 - 138	3.9e-12	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000254)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis	pycom04g06850
rosa_chinensis	RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora	Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii	Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa	Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha	Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana	Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 116
AccIII	TCCGGA	1 cut(s)	48
AciI	CCGC	3 cut(s)	69, 72, 415
AclWI	GGATC	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	328
Aor13HI	TCCGGA	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	101, 164, 174
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	58, 116
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	88, 151, 186
BceAI	ACGGC	2 cut(s)	77, 93
BcnI	CCSGG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	5 cut(s)	70, 73, 103, 166, 176
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	36, 60, 118
BmrFI	CCNGG	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	48
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	305, 311
BseNI	ACTGG	1 cut(s)	35
BseXI	GCAGC	3 cut(s)	88, 151, 186
BshNI	GGYRCC	2 cut(s)	58, 116
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	3 cut(s)	49, 114, 351
BslI	CCNNNNNNNGG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	123, 333
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	3 cut(s)	69, 72, 415
BspCNI	CTCAG	2 cut(s)	304, 310
BspEI	TCCGGA	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	36, 60, 118
BspPI	GGATC	1 cut(s)	328
BspT107I	GGYRCC	2 cut(s)	58, 116
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	2 cut(s)	123, 333
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	106, 115, 267, 303
BstDEI	CTNAG	2 cut(s)	291, 297
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	126, 336
BstMBI	GATC	2 cut(s)	123, 333
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 98, 110, 114, 302, 404
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	88, 151, 186
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	4 cut(s)	106, 115, 267, 303
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	291, 297
DinI	GGCGCC	1 cut(s)	118
DpnI	GATC	2 cut(s)	125, 335
DpnII	GATC	2 cut(s)	123, 333
Ecl136II	GAGCTC	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	400
EgeI	GGCGCC	1 cut(s)	118
EheI	GGCGCC	1 cut(s)	118
FaeI	CATG	1 cut(s)	230
FaiI	YATR	4 cut(s)	228, 263, 275, 345
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	3 cut(s)	49, 114, 351
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	2 cut(s)	9, 347
HpaII	CCGG	3 cut(s)	49, 114, 351
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	4 cut(s)	6, 49, 136, 227
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	49, 73
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	265, 305
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 98, 110, 114, 302, 404
HpyF3I	CTNAG	2 cut(s)	291, 297
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	117
KasI	GGCGCC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	123, 333
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	3 cut(s)	88, 151, 186
MalI	GATC	2 cut(s)	125, 335
MboI	GATC	2 cut(s)	123, 333
MboII	GAAGA	2 cut(s)	64, 262
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	309, 378
Mly113I	GGCGCC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	3 cut(s)	178, 199, 336
MroI	TCCGGA	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	49, 114, 351
MspR9I	CCNGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	6 cut(s)	65, 98, 110, 114, 302, 404
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	352
NdeII	GATC	2 cut(s)	123, 333
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	3 cut(s)	36, 60, 118
NmeAIII	GCCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	70, 73, 103, 166, 176
PleI	GAGTC	1 cut(s)	17
PluTI	GGCGCC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	36, 60, 118
PspPI	GGNCC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	5 cut(s)	69, 72, 102, 165, 175
Sau3AI	GATC	2 cut(s)	123, 333
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	400
SfoI	GGCGCC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	309, 378
SsiI	CCGC	3 cut(s)	69, 72, 415
SspDI	GGCGCC	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	126, 201
TasI	AATT	2 cut(s)	309, 378
TauI	GCSGC	2 cut(s)	71, 74
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	3 cut(s)	101, 164, 174
TspDTI	ATGAA	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.