RchiOBHm_Chr7g0220091

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000254
Physical Location & Seq
Forward (+)
38891299 .. 38895768
4470 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19701

Sequence Viewer

Length: 642 bp
ATGTGGAAATGGCGAAATAAGGATATTTTTGATGTTGGTTTTCATAGACCCTATAATACCTCTCACATCATTCTAAATGCTACGATTAAGTGGTCTCATGCTCAATCTAAACTTAACTTGGTGGTTCAATATTGTTTCAATATGTTTTCTTGGACCATGCCTGATGATGGTTATGTGAAACTTAATGTGGATGGCACAAGAGCTGGTCAATCAGGACAAATTGGTGCTGGTGGAGTATTAAATGACCATAATGGTGATTGGCTTGCAGGTTTTATGATTAATGTTGGTAAAGGACACGTCCTTACTGCTGAGGCTTGGGGCTTGCTTTCTGGCTTGAAACTTGCTACTGATTTACAGGTTAATAAGATTGAAATTGAGTCTGACTCTGCCATTCTCATCAAACTCATTGTTGAAGGCTGTGAAAGTTCCCATCCTCTTGGAAGCATTTTGAACAGCTGCAAGTCTCTACTTAATGGTTTTGAAGATGTGAAGATTAAGCATATTTTTAGAGAAAGCAATATGACTGCAGATGCCATGGCTAAGAGCAGCCTCTCTCATGATCCTGAGATTGTTATTTTCAATACTCCCCCCCCCCCCCCCAAGCTTCAAGTGCTTTTATGGATGATATTTGTGGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

213

Amino Acids

23.69

Weight (kDa)

6.22

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 62 - 182 8.8e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 9 cut(s) 128, 139, 337, 371, 413, 451, 482, 580, 608
AjiI CACGTC 1 cut(s) 298
AluBI AGCT 3 cut(s) 203, 456, 604
AluI AGCT 3 cut(s) 203, 456, 604
Alw26I GTCTC 2 cut(s) 99, 468
AlwI GGATC 1 cut(s) 554
ApeKI GCWGC 2 cut(s) 456, 546
AseI ATTAAT 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 443, 558
BccI CCATC 3 cut(s) 161, 185, 438
BcoDI GTCTC 2 cut(s) 99, 468
BfmI CTRYAG 1 cut(s) 525
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 2 cut(s) 457, 547
BlsI GCNGC 2 cut(s) 458, 548
Bme18I GGWCC 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 153
BmsI GCATC 1 cut(s) 520
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 3 cut(s) 196, 430, 627
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 300, 555
BseXI GCAGC 2 cut(s) 443, 558
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 99, 468
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 559
Bsp19I CCATGG 1 cut(s) 534
BspCNI CTCAG 2 cut(s) 301, 556
BspHI TCATGA 1 cut(s) 556
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 534
BstC8I GCNNGC 2 cut(s) 264, 323
BstDEI CTNAG 3 cut(s) 309, 540, 564
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 196, 430, 627
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 99, 468
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 1 cut(s) 610
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 443, 558
BstXI CCANNNNNNTGG 1 cut(s) 437
BtgI CCRYGG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 3 cut(s) 196, 430, 627
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 264, 323
CciI TCATGA 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 4 cut(s) 98, 157, 535, 557
DdeI CTNAG 3 cut(s) 309, 540, 564
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 4 cut(s) 101, 160, 538, 560
FatI CATG 4 cut(s) 97, 156, 534, 556
Fnu4HI GCNGC 2 cut(s) 457, 547
FokI GGATG 3 cut(s) 203, 417, 634
Fsp4HI GCNGC 2 cut(s) 457, 547
GluI GCNGC 2 cut(s) 457, 547
Hin1II CATG 4 cut(s) 101, 160, 538, 560
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 2 cut(s) 377, 383
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 3 cut(s) 213, 557, 563
HpyAV CCTTC 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 266, 459, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 610
HpyF3I CTNAG 3 cut(s) 309, 540, 564
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 4 cut(s) 101, 160, 538, 560
Kzo9I GATC 1 cut(s) 559
LpnPI CCDG 8 cut(s) 174, 189, 198, 213, 252, 315, 341, 576
Lsp1109I GCAGC 2 cut(s) 443, 558
LweI GCATC 1 cut(s) 520
MaeII ACGT 1 cut(s) 297
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 2 cut(s) 494, 502
MluCI AATT 2 cut(s) 219, 372
MlyI GAGTC 2 cut(s) 377, 386
MnlI CCTC 4 cut(s) 70, 304, 444, 560
MseI TTAA 8 cut(s) 87, 114, 183, 239, 279, 360, 471, 495
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 456
MwoI GCNNNNNNNGC 1 cut(s) 610
NcoI CCATGG 1 cut(s) 534
NdeII GATC 1 cut(s) 559
NlaIII CATG 4 cut(s) 101, 160, 538, 560
PagI TCATGA 1 cut(s) 556
PkrI GCNGC 2 cut(s) 458, 548
PleI GAGTC 2 cut(s) 377, 385
PpsI GAGTC 2 cut(s) 377, 385
PshBI ATTAAT 1 cut(s) 279
PspPI GGNCC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 8 cut(s) 87, 114, 183, 239, 279, 360, 471, 495
SatI GCNGC 2 cut(s) 457, 547
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 2 cut(s) 377, 386
SetI ASST 7 cut(s) 62, 205, 271, 300, 360, 458, 606
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 2 cut(s) 219, 372
SspI AATATT 1 cut(s) 131
StyI CCWWGG 1 cut(s) 534
TaiI ACGT 1 cut(s) 300
TasI AATT 2 cut(s) 219, 372
Tru1I TTAA 8 cut(s) 87, 114, 183, 239, 279, 360, 471, 495
Tru9I TTAA 8 cut(s) 87, 114, 183, 239, 279, 360, 471, 495
TseI GCWGC 2 cut(s) 456, 546
TspDTI ATGAA 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 153
VspI ATTAAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.