Rmu_sc0000172.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000172.1
OG0000254
Physical Location & Seq
Forward (+)
42204 .. 42533
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000172.1_g000008.1.cds

Sequence Viewer

Length: 330 bp
atggctgcaaacttgcacatctctcaacttgaggttgagtctgattctgcagtgttggtgcagctgatacaaagtgctgatcttgacaatcatcctcttggttctcttctgactggttgtctcaatctcatgaacagcatggggaatgctcatgttaggcatattttcagggaatgcaacatgactgcagacgccttggccaaggacagtattaaccatgagcttgggttcattactcttgatagcactcccattcatgctgctcaatcatacctggatcacatagcctctgtgtctagagctagaaggagtgcttactccagttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

109

Amino Acids

11.8

Weight (kDa)

5.68

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 192
AhdI GACNNNNNGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 64, 223, 302
AluI AGCT 3 cut(s) 64, 223, 302
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 285
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 3 cut(s) 5, 61, 260
BalI TGGCCA 1 cut(s) 200
BbvI GCAGC 2 cut(s) 73, 247
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 297, 303
BfmI CTRYAG 2 cut(s) 48, 186
BisI GCNGC 3 cut(s) 6, 62, 261
BlsI GCNGC 3 cut(s) 7, 63, 262
Bme1390I CCNGG 1 cut(s) 275
BmeRI GACNNNNNGTC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 195, 201
Bse1I ACTGG 2 cut(s) 118, 321
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 195, 201
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 2 cut(s) 118, 321
BseXI GCAGC 2 cut(s) 73, 247
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 125
BsmI GAATGC 2 cut(s) 151, 179
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 79, 277
BspANI GGCC 1 cut(s) 200
BspHI TCATGA 1 cut(s) 129
BspMAI CTGCAG 2 cut(s) 52, 190
BspPI GGATC 1 cut(s) 285
BsrI ACTGG 2 cut(s) 118, 321
BssECI CCNNGG 2 cut(s) 195, 201
BssMI GATC 2 cut(s) 79, 277
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 195, 201
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 82, 280
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 79, 277
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 2 cut(s) 48, 186
BstV1I GCAGC 2 cut(s) 73, 247
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
CciI TCATGA 1 cut(s) 129
CseI GACGC 1 cut(s) 200
CviAII CATG 6 cut(s) 130, 139, 152, 181, 218, 257
CviJI RGCY 6 cut(s) 5, 64, 200, 223, 287, 302
CviKI_1 RGCY 6 cut(s) 5, 64, 200, 223, 287, 302
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 81, 279
DpnII GATC 2 cut(s) 79, 277
DriI GACNNNNNGTC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 111
Eam1105I GACNNNNNGTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 195, 201
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 2 cut(s) 195, 201
ErhI CCWWGG 2 cut(s) 195, 201
FaeI CATG 6 cut(s) 133, 142, 155, 184, 221, 260
FaiI YATR 9 cut(s) 131, 140, 153, 162, 182, 219, 258, 271, 284
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FatI CATG 6 cut(s) 129, 138, 151, 180, 217, 256
Fnu4HI GCNGC 3 cut(s) 6, 62, 261
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 6, 62, 261
FspBI CTAG 2 cut(s) 297, 303
GluI GCNGC 3 cut(s) 6, 62, 261
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 1 cut(s) 200
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 6 cut(s) 133, 142, 155, 184, 221, 260
HinfI GANTC 2 cut(s) 38, 44
Hpy188I TCNGA 2 cut(s) 43, 111
Hpy188III TCNNGA 4 cut(s) 83, 130, 239, 297
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 6 cut(s) 8, 16, 50, 61, 177, 188
HpyF3I CTNAG 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 6 cut(s) 133, 142, 155, 184, 221, 260
Kzo9I GATC 2 cut(s) 79, 277
LpnPI CCDG 4 cut(s) 99, 154, 260, 287
Lsp1109I GCAGC 2 cut(s) 73, 247
MaeI CTAG 2 cut(s) 297, 303
MalI GATC 2 cut(s) 81, 279
MboI GATC 2 cut(s) 79, 277
MboII GAAGA 1 cut(s) 98
MlsI TGGCCA 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 3 cut(s) 25, 105, 298
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 2 cut(s) 151, 179
MvaI CCWGG 1 cut(s) 275
NdeII GATC 2 cut(s) 79, 277
NlaIII CATG 6 cut(s) 133, 142, 155, 184, 221, 260
PagI TCATGA 1 cut(s) 129
PctI GAATGC 2 cut(s) 151, 179
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 7, 63, 262
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PstI CTGCAG 2 cut(s) 52, 190
PvuII CAGCTG 1 cut(s) 64
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 3 cut(s) 6, 62, 261
Sau3AI GATC 2 cut(s) 79, 277
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 275
SetI ASST 5 cut(s) 36, 66, 225, 276, 304
SfcI CTRYAG 2 cut(s) 48, 186
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SspMI CTAG 2 cut(s) 297, 303
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 2 cut(s) 195, 201
TaaI ACNGT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 57
TseI GCWGC 3 cut(s) 5, 61, 260
TspDTI ATGAA 3 cut(s) 146, 220, 245
TspRI CASTG 1 cut(s) 57
XbaI TCTAGA 1 cut(s) 296
XspI CTAG 2 cut(s) 297, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.