Rorug01G0092300

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000254
Physical Location & Seq
Forward (+)
15048711 .. 15050450
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0092300.1

Sequence Viewer

Length: 873 bp
ATGAAGGATTTGATTTCCTCCAAGCATGAAAGCAAGACCAGAGAAAATGCAGGCTTAGGAAAGATTGTGATGAAAATGGAAAATATGAGAGTGAATCATTTTGCTTTGCCTTTTCTTGTGCTTCTTTGCTTGGCAAGAATCTGTAGCAATAGTCTTACAGCTGATCACTATCCAGACCAAATCCTCTTTGGGAAGAAGCATTTTGTGCTGGTTCATGGAGCCGGTCATGGAGCTTGGTGTTGGTATAAGTTGGCAACTCTATTGACCTCCACAGGTCACAATGTTACAACACTAGACCTTGCAGCATCTGGGATCAACCAGATCCAGGTAGAGCAAGTTCATTTGTTCTCCGAGTACGTTGAGCCATTGATCAGTTTTCTGGGGTCTCTTACGCCAAAGGAGAGGGTTATCCTGGTTGGCCACAGCTTGGGTGGAGCCGTGATATCAATTGCCATGGAGAGGTTCCCTGAGAAAATTGCTGCTGCTGTATATGCTACTGCTGTGATGCCAGGTCCTTCTCTTAGTTACTTGACTATACATGATAAGCTCAAGGAAAGATGGGATGCTAAGCAAATATCATCGTACCAGCTATCGCCACCAGAGGATCTAACACTAGCATTGTCATTGCTGAGACCTTCCCCAACATTTAATGAAGATATAAAACTCACCGACGAGAAATACGGATTGGTTCCAAGAGTGTTCATCGTGTGCGACCAAGACCTTACAATAGAGGAGGAAATACAAATGTGGATGATCAGGGAGAACCCACCAAATGAAGTGAAAGTGATAAATGGTTCCGATCACATGGTCATGTTCTCTAGACCACTGGAGCTGTTCTCCAACCTCCTCAAGATTGCTGAGAAATATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

290

Amino Acids

32.55

Weight (kDa)

6.26

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 66 - 171 1.2e-10 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 67 - 175 1.6e-14 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 68 - 279 3.4e-21 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 427
AclWI GGATC 3 cut(s) 316, 320, 612
AcoI YGGCCR 1 cut(s) 418
AfaI GTAC 2 cut(s) 356, 584
AfiI CCNNNNNNNGG 3 cut(s) 325, 427, 459
AjnI CCWGG 3 cut(s) 324, 411, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 6 cut(s) 161, 233, 426, 547, 589, 832
AluI AGCT 6 cut(s) 161, 233, 426, 547, 589, 832
Alw26I GTCTC 2 cut(s) 390, 625
AlwI GGATC 3 cut(s) 316, 320, 612
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 3 cut(s) 302, 479, 482
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 658
AvaII GGWCC 1 cut(s) 512
BalI TGGCCA 1 cut(s) 420
BbvI GCAGC 3 cut(s) 314, 466, 469
BccI CCATC 1 cut(s) 552
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 3 cut(s) 326, 413, 510
BclI TGATCA 3 cut(s) 163, 369, 753
BcoDI GTCTC 2 cut(s) 390, 625
BfaI CTAG 3 cut(s) 293, 614, 819
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 3 cut(s) 303, 480, 483
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 3 cut(s) 304, 481, 484
Bme1390I CCNGG 3 cut(s) 326, 413, 510
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 5 cut(s) 220, 436, 464, 690, 796
BmrFI CCNGG 3 cut(s) 326, 413, 510
BmsI GCATC 3 cut(s) 314, 495, 553
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpmI CTGGAG 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 533, 833
BsaBI GATNNNNATC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 390, 625
BsaJI CCNNGG 1 cut(s) 453
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 427, 459
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 623
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 3 cut(s) 326, 413, 510
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 2 cut(s) 568, 756
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 3 cut(s) 325, 427, 459
BseMI GCAATG 1 cut(s) 623
BseMII CTCAG 3 cut(s) 459, 620, 849
BseNI ACTGG 1 cut(s) 831
BseRI GAGGAG 2 cut(s) 746, 836
BseXI GCAGC 3 cut(s) 314, 466, 469
BshFI GGCC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 3 cut(s) 325, 427, 459
BsmAI GTCTC 2 cut(s) 390, 625
BsnI GGCC 1 cut(s) 420
Bso31I GGTCTC 2 cut(s) 390, 625
Bsp143I GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
Bsp1720I GCTNAGC 1 cut(s) 567
Bsp19I CCATGG 1 cut(s) 453
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 3 cut(s) 460, 621, 850
BspLI GGNNCC 5 cut(s) 220, 436, 464, 690, 796
BspPI GGATC 3 cut(s) 316, 320, 612
BspTNI GGTCTC 2 cut(s) 390, 625
BsrDI GCAATG 1 cut(s) 623
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 326, 413, 510
BstAPI GCANNNNNTGC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 6 cut(s) 55, 468, 521, 567, 629, 858
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 568, 756
BstKTI GATC 7 cut(s) 166, 315, 324, 372, 607, 756, 802
BstMAI GTCTC 2 cut(s) 390, 625
BstMBI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
BstMWI GCNNNNNNNGC 2 cut(s) 205, 491
BstNI CCWGG 3 cut(s) 326, 413, 510
BstSCI CCNGG 3 cut(s) 324, 411, 508
BstSFI CTRYAG 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 314, 466, 469
BstX2I RGATCY 2 cut(s) 321, 604
BstYI RGATCY 2 cut(s) 321, 604
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 568, 756
BtsIMutI CAGTG 1 cut(s) 824
Cac8I GCNNGC 1 cut(s) 52
CaiI CAGNNNCTG 1 cut(s) 308
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 355, 583
CviAII CATG 7 cut(s) 26, 215, 227, 454, 539, 805, 811
CviQI GTAC 2 cut(s) 355, 583
DdeI CTNAG 6 cut(s) 55, 468, 521, 567, 629, 858
DpnI GATC 7 cut(s) 165, 314, 323, 371, 606, 755, 801
DpnII GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
EaeI YGGCCR 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 390, 625
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 3 cut(s) 324, 411, 508
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 7 cut(s) 29, 218, 230, 457, 542, 808, 814
FatI CATG 7 cut(s) 25, 214, 226, 453, 538, 804, 810
FbaI TGATCA 3 cut(s) 163, 369, 753
Fnu4HI GCNGC 3 cut(s) 303, 480, 483
FokI GGATG 2 cut(s) 575, 763
Fsp4HI GCNGC 3 cut(s) 303, 480, 483
FspBI CTAG 3 cut(s) 293, 614, 819
GluI GCNGC 3 cut(s) 303, 480, 483
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 1 cut(s) 420
HapII CCGG 1 cut(s) 222
Hin1II CATG 7 cut(s) 29, 218, 230, 457, 542, 808, 814
HinfI GANTC 2 cut(s) 94, 138
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 658
Hpy188I TCNGA 2 cut(s) 352, 799
Hpy188III TCNNGA 3 cut(s) 173, 819, 850
Hpy99I CGWCG 1 cut(s) 674
HpyAV CCTTC 2 cut(s) 525, 645
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 50, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 491
HpyF3I CTNAG 6 cut(s) 55, 468, 521, 567, 629, 858
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 7 cut(s) 29, 218, 230, 457, 542, 808, 814
Ksp22I TGATCA 3 cut(s) 163, 369, 753
Kzo9I GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
LmnI GCTCC 4 cut(s) 218, 230, 434, 829
Lsp1109I GCAGC 3 cut(s) 314, 466, 469
LweI GCATC 3 cut(s) 314, 495, 553
MaeI CTAG 3 cut(s) 293, 614, 819
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 275, 283, 524
MalI GATC 7 cut(s) 165, 314, 323, 371, 606, 755, 801
MboI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
MboII GAAGA 2 cut(s) 205, 665
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 321, 604
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 2 cut(s) 447, 474
MluNI TGGCCA 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 864
Mox20I TGGCCA 1 cut(s) 420
MscI TGGCCA 1 cut(s) 420
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 1 cut(s) 809
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 3 cut(s) 326, 413, 510
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 3 cut(s) 326, 413, 510
MwoI GCNNNNNNNGC 2 cut(s) 205, 491
NcoI CCATGG 1 cut(s) 453
NdeII GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
NlaIII CATG 7 cut(s) 29, 218, 230, 457, 542, 808, 814
NlaIV GGNNCC 5 cut(s) 220, 436, 464, 690, 796
NmuCI GTSAC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 94, 138
PflMI CCANNNNNTGG 1 cut(s) 427
PkrI GCNGC 3 cut(s) 304, 481, 484
PpuMI RGGWCCY 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 3 cut(s) 324, 411, 508
PspGI CCWGG 3 cut(s) 324, 411, 508
PspN4I GGNNCC 5 cut(s) 220, 436, 464, 690, 796
PspPI GGNCC 1 cut(s) 512
PspPPI RGGWCCY 1 cut(s) 512
PsrI GAACNNNNNNTAC 2 cut(s) 321, 353
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 2 cut(s) 321, 604
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 2 cut(s) 356, 584
RsaNI GTAC 2 cut(s) 355, 583
RseI CAYNNNNRTG 1 cut(s) 809
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 3 cut(s) 303, 480, 483
Sau3AI GATC 7 cut(s) 163, 312, 321, 369, 604, 753, 799
Sau96I GGNCC 1 cut(s) 512
ScrFI CCNGG 3 cut(s) 326, 413, 510
SfaNI GCATC 3 cut(s) 314, 495, 553
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 809
SmlI CTYRAG 2 cut(s) 548, 848
SmoI CTYRAG 2 cut(s) 548, 848
Sse9I AATT 2 cut(s) 447, 474
SspI AATATT 1 cut(s) 866
SspMI CTAG 3 cut(s) 293, 614, 819
StyD4I CCNGG 3 cut(s) 324, 411, 508
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 1 cut(s) 360
TasI AATT 2 cut(s) 447, 474
TfiI GAWTC 2 cut(s) 94, 138
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 3 cut(s) 302, 479, 482
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 9 cut(s) 17, 42, 86, 203, 329, 666, 691, 789, 858
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 1 cut(s) 831
Van91I CCANNNNNTGG 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 512
XbaI TCTAGA 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 2 cut(s) 185, 428
XspI CTAG 3 cut(s) 293, 614, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.