Rmu_sc0005478.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005478.1
OG0000254
Physical Location & Seq
Reverse (-)
1320 .. 1724
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005478.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atgaaacaggagagtggactaatggttttatggccaatgttggtgctagctagggaagttatacaggctgaagcttggggcctttactatggtttgcaacttgctctaagtctgaatatccaacaatccaacatcttgaggtggagtctgactctgcaaaatgaagatgtcaagctgcatcctctaggttccttgctccttaactgtaagcagtcgatggaacagttggctacactgctgctcaggcacattcatagagagggaaatatggtggctgattttctcgctcaggaaagtgtgcgtgacactgtggttgtatgtacttgtagtacccctctgactctggtgattgaaactattctggataacaatttaggtgttgccaggcctggcaagggggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.97

Weight (kDa)

5.55

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000254)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25671 FvH4_1g29782 FvH4_2g06731 FvH4_2g09413 FvH4_2g12061 FvH4_2g12671 FvH4_2g14202 FvH4_3g27901 FvH4_3g30492 FvH4_3g36953 FvH4_4g10141 FvH4_4g11162 FvH4_5g27995 FvH4_5g34262 FvH4_6g10681 FvH4_6g13733 FvH4_6g18164 FvH4_6g25491 FvH4_6g25791 FvH4_6g27023 FvH4_6g34321 FvH4_7g05070
pyrus_communis pycom04g06850
rosa_chinensis RchiOBHm_Chr1g0322281 RchiOBHm_Chr1g0334981 RchiOBHm_Chr1g0371181 RchiOBHm_Chr2g0125461 RchiOBHm_Chr2g0127141 RchiOBHm_Chr2g0128961 RchiOBHm_Chr2g0132921 RchiOBHm_Chr3g0486471 RchiOBHm_Chr3g0492911 RchiOBHm_Chr4g0412131 RchiOBHm_Chr4g0426941 RchiOBHm_Chr4g0437331 RchiOBHm_Chr5g0018821 RchiOBHm_Chr5g0040021 RchiOBHm_Chr5g0051041 RchiOBHm_Chr6g0266871 RchiOBHm_Chr6g0271761 RchiOBHm_Chr7g0200931 RchiOBHm_Chr7g0220091
rosa_multiflora Rmu_co7991344.1_g000001 Rmu_sc0000172.1_g000008 Rmu_sc0000194.1_g000010 Rmu_sc0000446.1_g000026 Rmu_sc0000496.1_g000011 Rmu_sc0000530.1_g000013 Rmu_sc0000706.1_g000044 Rmu_sc0000745.1_g000029 Rmu_sc0001301.1_g000027 Rmu_sc0001520.1_g000008 Rmu_sc0001966.1_g000025 Rmu_sc0001989.1_g000007 Rmu_sc0002239.1_g000002 Rmu_sc0002816.1_g000004 Rmu_sc0003458.1_g000001 Rmu_sc0003825.1_g000031 Rmu_sc0003919.1_g000002 Rmu_sc0004053.1_g000007 Rmu_sc0004161.1_g000008 Rmu_sc0004368.1_g000033 Rmu_sc0004383.1_g000002 Rmu_sc0004923.1_g000002 Rmu_sc0005065.1_g000001 Rmu_sc0005478.1_g000001 Rmu_sc0006847.1_g000031 Rmu_sc0009556.1_g000002 Rmu_sc0010783.1_g000007 Rmu_sc0011424.1_g000022 Rmu_sc0013205.1_g000002 Rmu_sc0017407.1_g000001 Rmu_sc0023757.1_g000002 Rmu_sc0032346.1_g000001 Rmu_ssc0000008.1_g000014 Rmu_ssc0000158.1_g000033 Rmu_ssc0000217.1_g000028
rosa_roxburghii Rroxscaffold_1G00000480 Rroxscaffold_1G00026050 Rroxscaffold_1G00026250 Rroxscaffold_2G00085120 Rroxscaffold_2G00119710 Rroxscaffold_2G00126610 Rroxscaffold_2G00129340 Rroxscaffold_3G00245550 Rroxscaffold_5G00340210 Rroxscaffold_5G00340330 Rroxscaffold_6G00397180 Rroxscaffold_7G00216160
rosa_rugosa Rorug01G0040000 Rorug01G0067400 Rorug01G0092300 Rorug01G0197000 Rorug01G0474200 Rorug01G0482500 Rorug01G0489300 Rorug02G0142900 Rorug02G0259000 Rorug02G0283200 Rorug02G0341400 Rorug02G0341600 Rorug02G0370900 Rorug02G0379700 Rorug02G0386100 Rorug02G0387300 Rorug03G0112600 Rorug03G0265600 Rorug03G0298800 Rorug04G0019500 Rorug05G0069900 Rorug05G0070500 Rorug05G0256800 Rorug05G0287300 Rorug05G0592000 Rorug06G0057800 Rorug06G0082000 Rorug06G0118900 Rorug06G0176500 Rorug06G0423100 Rorug07G0050100 Rorug07G0095100 Rorug07G0202100 Rorug07G0216600 Rorug07G0244300 Rorug07G0245500
rosa_samantha Rh1DG154800 Rh2CG613000 Rh6BG016600 Rh6BG475100 Rh6CG013200 Rh7AG443800
rosa_wichuraiana Rw0G021840 Rw4G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 2 cut(s) 322, 331
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 2 cut(s) 383, 388
AluBI AGCT 3 cut(s) 50, 74, 175
AluI AGCT 3 cut(s) 50, 74, 175
AoxI GGCC 3 cut(s) 32, 79, 386
ApeKI GCWGC 2 cut(s) 175, 238
Asp700I GAANNNNTTC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 358
AsuNHI GCTAGC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 34
BbvI GCAGC 2 cut(s) 162, 225
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 385, 390
BfaI CTAG 3 cut(s) 47, 51, 185
BisI GCNGC 2 cut(s) 176, 239
BlsI GCNGC 2 cut(s) 177, 240
Bme1390I CCNGG 2 cut(s) 385, 390
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 80, 190
BmrFI CCNGG 2 cut(s) 385, 390
BmsI GCATC 1 cut(s) 187
BmtI GCTAGC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 136, 168
Bpu10I CCTNAGC 2 cut(s) 242, 288
BpuEI CTTGAG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 385, 390
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 256, 302
BseXI GCAGC 2 cut(s) 162, 225
BshFI GGCC 3 cut(s) 34, 81, 388
BslI CCNNNNNNNGG 1 cut(s) 395
BsnI GGCC 3 cut(s) 34, 81, 388
BspANI GGCC 3 cut(s) 34, 81, 388
BspCNI CTCAG 2 cut(s) 255, 301
BspLI GGNNCC 2 cut(s) 80, 190
BspOI GCTAGC 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 385, 390
Bst4CI ACNGT 3 cut(s) 206, 225, 310
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 107, 242, 288
BstF5I GGATG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 2 cut(s) 385, 390
BstSCI CCNGG 2 cut(s) 383, 388
BstV1I GCAGC 2 cut(s) 162, 225
BsuRI GGCC 3 cut(s) 34, 81, 388
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 233, 306
Cac8I GCNNGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 321, 330
CviJI RGCY 9 cut(s) 34, 50, 68, 74, 81, 175, 230, 275, 388
CviKI_1 RGCY 9 cut(s) 34, 50, 68, 74, 81, 175, 230, 275, 388
CviQI GTAC 2 cut(s) 321, 330
DdeI CTNAG 3 cut(s) 107, 242, 288
EaeI YGGCCR 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 383, 388
FaiI YATR 6 cut(s) 31, 62, 90, 255, 269, 319
Fnu4HI GCNGC 2 cut(s) 176, 239
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 2 cut(s) 176, 239
FspBI CTAG 3 cut(s) 47, 51, 185
GluI GCNGC 2 cut(s) 176, 239
HaeIII GGCC 3 cut(s) 34, 81, 388
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 145, 151, 340
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 3 cut(s) 114, 150, 339
Hpy188III TCNNGA 3 cut(s) 136, 290, 362
Hpy8I GTNNAC 1 cut(s) 17
HpyCH4III ACNGT 3 cut(s) 206, 225, 310
HpyCH4V TGCA 3 cut(s) 97, 157, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 3 cut(s) 107, 242, 288
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 8 cut(s) 50, 229, 275, 329, 347, 370, 375, 397
Lsp1109I GCAGC 2 cut(s) 162, 225
LweI GCATC 1 cut(s) 187
MaeI CTAG 3 cut(s) 47, 51, 185
MaeIII GTNAC 1 cut(s) 302
MboII GAAGA 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 1 cut(s) 370
MluNI TGGCCA 1 cut(s) 34
MlyI GAGTC 3 cut(s) 145, 154, 334
MmeI TCCRAC 2 cut(s) 145, 153
MnlI CCTC 4 cut(s) 132, 192, 253, 345
Mox20I TGGCCA 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 357
MscI TGGCCA 1 cut(s) 34
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 385, 390
MvaI CCWGG 2 cut(s) 385, 390
MwoI GCNNNNNNNGC 1 cut(s) 244
NheI GCTAGC 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 80, 190
NmuCI GTSAC 1 cut(s) 302
PceI AGGCCT 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 357
PkrI GCNGC 2 cut(s) 177, 240
PleI GAGTC 3 cut(s) 145, 153, 334
PpsI GAGTC 3 cut(s) 145, 153, 334
Psp6I CCWGG 2 cut(s) 383, 388
PspGI CCWGG 2 cut(s) 383, 388
PspN4I GGNNCC 2 cut(s) 80, 190
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 2 cut(s) 322, 331
RsaNI GTAC 2 cut(s) 321, 330
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 176, 239
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 3 cut(s) 145, 154, 334
ScrFI CCNGG 2 cut(s) 385, 390
SetI ASST 6 cut(s) 52, 76, 143, 177, 190, 379
SfaNI GCATC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 1 cut(s) 370
SseBI AGGCCT 1 cut(s) 388
SspMI CTAG 3 cut(s) 47, 51, 185
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 383, 388
TaaI ACNGT 3 cut(s) 206, 225, 310
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 370
TatI WGTACW 1 cut(s) 320
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 240, 313
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 2 cut(s) 175, 238
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 17, 177, 242
TspRI CASTG 2 cut(s) 240, 313
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 3 cut(s) 47, 51, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.